Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05432 Davidia involucrata HOM05D008160 ORTHO05D009635 3.5e-65 251.5 130 100.0
QL06p012138 Quercus lobata HOM05D008160 ORTHO05D009635 1.1e-26 123.6 131 55.0
QL08p033125 Quercus lobata HOM05D008160 ORTHO05D009635 1.1e-26 123.6 131 55.0
TAR626G0785 Trochodendron aralioides HOM05D008160 ORTHO05D009635 1.6e-22 109.8 131 50.4
TAR624G1256 Trochodendron aralioides HOM05D008160 ORTHO05D009635 2.1e-22 109.4 130 53.1
CiPaw.03G160200 Carya illinoinensis HOM05D008160 ORTHO05D009635 6.8e-21 104.4 133 53.4
Cfa014402 Carpinus fangiana HOM05D008160 ORTHO05D009635 4.4e-20 101.7 146 50.0
Hma1.2p1_0328F.1_g126920 Hydrangea macrophylla HOM05D008160 ORTHO05D009635 5.8e-20 101.3 75 70.7
CiPaw.04G116300 Carya illinoinensis HOM05D008160 ORTHO05D009635 2.2e-19 99.4 134 50.0
TWI75G1754 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 2.2e-19 99.4 98 57.1
Thecc.02G314100 Theobroma cacao HOM05D008160 ORTHO05D009635 3.8e-19 98.6 136 47.1
Haze_12867 Corylus avellana HOM05D008160 ORTHO05D009635 2.4e-18 95.9 94 58.5
TWI36G0727 Tripterygium wilfordii HOM05D008160 ORTHO05D009635 4.2e-18 95.1 93 54.8
Glyma.13G308600 Glycine max HOM05D008160 ORTHO05D009635 8.7e-16 87.4 131 45.0
Gohir.D13G088500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.5e-15 85.9 131 45.8
CANSAT64G2131 Cannabis sativa HOM05D008160 ORTHO05D009635 4.3e-15 85.1 111 52.3
Ca_01599_v3 Cicer arietinum L. HOM05D008160 ORTHO05D009635 4.3e-15 85.1 129 39.5
Gohir.A13G094500 Gossypium hirsutum HOM05D008160 ORTHO05D009635 9.6e-15 84.0 131 45.8
Potri.014G153200 Populus trichocarpa HOM05D008160 ORTHO05D009635 2.1e-14 82.8 135 45.2
Rhsim04G0053300 Rhododendron simsii HOM05D000003 ORTHO05D000006 3.6e-14 82.0 77 70.1
Glyma.12G193900 Glycine max HOM05D008160 ORTHO05D009635 6.2e-14 81.3 95 52.6
Gorai.013G101200 Gossypium raimondii HOM05D008160 ORTHO05D009635 8.1e-14 80.9 118 45.8
Potri.002G229300 Populus trichocarpa HOM05D008160 ORTHO05D009635 1.1e-13 80.5 121 43.8
FAN09G3148 Fragaria x ananassa HOM05D008160 ORTHO05D009635 1.8e-13 79.7 137 43.8
Prupe.3G217400 Prunus persica HOM05D008160 ORTHO05D009635 1.8e-13 79.7 96 51.0
Glyma.06G305400 Glycine max HOM05D008160 ORTHO05D009635 2.4e-13 79.3 133 40.6
Gohir.A03G108800 Gossypium hirsutum HOM05D008160 ORTHO05D009635 2.4e-13 79.3 95 54.7
Gohir.D02G133900 Gossypium hirsutum HOM05D008160 ORTHO05D009635 3.1e-13 79.0 94 53.2
Gorai.005G149800 Gossypium raimondii HOM05D008160 ORTHO05D009635 3.1e-13 79.0 94 53.2
FAN02G3260 Fragaria x ananassa HOM05D008160 ORTHO05D009635 5.3e-13 78.2 137 43.8
FvH4_6g43200 Fragaria vesca HOM05D008160 ORTHO05D009635 9.0e-13 77.4 137 43.8
Manes.12G074700 Manihot esculenta HOM05D008160 ORTHO05D009635 1.5e-12 76.6 131 40.5
Eucgr.A01130 Eucalyptus grandis HOM05D008160 ORTHO05D009635 2.0e-12 76.3 124 44.4
TPR.G4242 Trifolium pratense HOM05D008160 ORTHO05D009635 2.0e-12 76.3 129 38.8
MD09G1108700 Malus domestica HOM05D008160 ORTHO05D009635 5.8e-12 74.7 127 42.5
Nn1g03539 Nelumbo nucifera HOM05D008160 ORTHO05D009635 5.8e-12 74.7 108 47.2
RcHm_v2.0_Chr2g0159421 Rosa chinensis HOM05D008160 ORTHO05D009635 7.6e-12 74.3 136 41.9
Sabra02G0175400 Salix brachista HOM05D008160 ORTHO05D009635 9.9e-12 73.9 137 41.6
Aqoxy1G02168 Aquilegia oxysepala HOM05D034144 ORTHO05D009635 1.3e-11 73.6 101 47.5
Lj3g0006762 Lotus japonicus HOM05D008160 ORTHO05D009635 2.2e-11 72.8 96 50.0
Ciclev10017235m.g Citrus clementina HOM05D008160 ORTHO05D009635 2.9e-11 72.4 90 48.9
RcHm_v2.0_Chr2g0159311 Rosa chinensis HOM05D008160 ORTHO05D009635 2.9e-11 72.4 136 41.2
Glyma.12G099100 Glycine max HOM05D008160 ORTHO05D009635 4.9e-11 71.6 93 47.3
COL.COLO4_27706 Corchorus olitorius HOM05D008160 ORTHO05D009635 6.4e-11 71.2 134 41.0
FAN10G1253 Fragaria x ananassa HOM05D008160 ORTHO05D009635 6.4e-11 71.2 137 41.6
FAN14G2424 Fragaria x ananassa HOM05D008160 ORTHO05D009635 6.4e-11 71.2 137 41.6
LjContig00412g0003580 Lotus japonicus HOM05D008160 ORTHO05D009635 6.4e-11 71.2 128 42.2
arahy.Tifrunner.gnm1.ann1.MX58RG Arachis hypogaea HOM05D008160 ORTHO05D009635 1.1e-10 70.5 82 48.8
CARHR097620 Cardamine hirsuta HOM05D010757 ORTHO05D009635 2.4e-10 69.3 82 47.6
PGR042G1178 Punica granatum HOM05D008160 ORTHO05D009635 1.6e-09 66.6 98 44.9
Cpa.g.sc8.214 Carica papaya HOM05D008160 ORTHO05D009635 2.1e-09 66.2 135 37.8
MELO3C019266.2 Cucumis melo HOM05D008160 ORTHO05D009635 2.1e-09 66.2 132 37.9
ClCG02G008690 Citrullus lanatus HOM05D008160 ORTHO05D009635 3.5e-09 65.5 134 36.6
Lalb_Chr19g0135851 Lupinus albus HOM05D008160 ORTHO05D009635 3.5e-09 65.5 118 38.1
TPR.G4649 Trifolium pratense HOM05D008160 ORTHO05D009635 3.5e-09 65.5 128 35.9
AL3G35800 Arabidopsis lyrata HOM05D010757 ORTHO05D009635 4.6e-09 65.1 77 42.9
CsaV3_2G034970 Cucumis sativus L. HOM05D008160 ORTHO05D009635 4.6e-09 65.1 134 36.6
PGSC0003DMG400028963 Solanum tuberosum HOM05D046998 ORTHO05D009635 7.8e-09 64.3 112 41.1
Sp7g13570 Schrenkiella parvula HOM05D010757 ORTHO05D009635 1.7e-08 63.2 74 45.9
AT3G21680 Arabidopsis thaliana HOM05D010757 ORTHO05D009635 3.0e-08 62.4 77 41.6
Rhsim04G0054400 Rhododendron simsii HOM05D000003 ORTHO05D009635 3.0e-08 62.4 81 56.8
Nn5g29373 Nelumbo nucifera HOM05D008160 ORTHO05D009635 3.9e-08 62.0 122 36.9
BcaB04g20576 Brassica carinata HOM05D010757 ORTHO05D009635 8.7e-08 60.8 84 39.3
Psat7g157360 Pisum sativum HOM05D008160 ORTHO05D009635 1.1e-07 60.5 130 33.8
C03p51830 Brassica napus HOM05D010757 ORTHO05D009635 1.5e-07 60.1 76 40.8
Sp3g19690 Schrenkiella parvula HOM05D010757 ORTHO05D009635 1.9e-07 59.7 73 43.8
A01p33300 Brassica napus HOM05D010757 ORTHO05D009635 2.5e-07 59.3 81 42.0
C01p42560 Brassica napus HOM05D010757 ORTHO05D009635 3.3e-07 58.9 81 42.0
BolC1t04209H Brassica oleracea HOM05D010757 ORTHO05D009635 3.3e-07 58.9 81 42.0
BraA01t03447Z Brassica rapa HOM05D010757 ORTHO05D009635 3.3e-07 58.9 81 42.0
BraA01t03448Z Brassica rapa HOM05D010757 ORTHO05D009635 3.3e-07 58.9 81 42.0
Medtr4g048060 Medicago truncatula HOM05D008160 ORTHO05D009635 3.3e-07 58.9 132 36.4
BcaC01g03493 Brassica carinata HOM05D010757 ORTHO05D009635 4.3e-07 58.5 76 40.8
Lalb_Chr03g0028751 Lupinus albus HOM05D008160 ORTHO05D009635 4.3e-07 58.5 71 45.1
Thhalv10022045m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 5.6e-07 58.2 83 39.8
Thhalv10026860m.g Eutrema salsugineum HOM05D010757 ORTHO05D009635 7.3e-07 57.8 76 38.2
Carub.0003s2173 Capsella rubella HOM05D010757 ORTHO05D009635 9.6e-07 57.4 75 41.3
VMungo1127G0429 Vigna mungo HOM05D008160 ORTHO05D009635 9.6e-07 57.4 76 42.1
Medtr2g088370 Medicago truncatula HOM05D008160 ORTHO05D009635 1.6e-06 56.6 131 33.6
ATR0752G071 Amborella trichopoda HOM05D008160 ORTHO05D009635 2.1e-06 56.2 99 42.4
ATR0661G403 Amborella trichopoda HOM05D008160 ORTHO05D009635 2.8e-06 55.8 116 34.5
Sopen07g025980 Solanum pennellii HOM05D046998 ORTHO05D009635 2.8e-06 55.8 111 36.9
Aqoxy1G02166 Aquilegia oxysepala HOM05D034144 ORTHO05D009635 6.2e-06 54.7 122 34.4
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 8.1e-06 54.3 91 41.8


User provided reference genes

Program Settings