Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05370 Davidia involucrata HOM05D005403 ORTHO05D006572 4.4e-83 311.2 156 100.0
Dinv20864 Davidia involucrata HOM05D005403 ORTHO05D006572 8.1e-61 237.3 125 92.8
Cc02_g31920 Coffea canephora HOM05D005403 ORTHO05D006572 2.7e-56 222.2 119 89.1
Oeu027466.2 Olea europaea HOM05D005403 ORTHO05D006572 3.5e-56 221.9 138 78.3
TWI74G0584 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 1.0e-55 220.3 137 79.6
Actinidia05774 Actinidia chinensis HOM05D005403 ORTHO05D006572 1.3e-55 219.9 119 89.9
TAR362G0997 Trochodendron aralioides HOM05D005403 ORTHO05D006572 1.3e-55 219.9 119 87.4
Manes.09G153900 Manihot esculenta HOM05D005403 ORTHO05D006572 3.9e-55 218.4 119 84.9
Duzib106G1152 Durio zibethinus HOM05D005403 ORTHO05D006572 5.1e-55 218.0 136 79.4
TAR365G0414 Trochodendron aralioides HOM05D005403 ORTHO05D006572 5.1e-55 218.0 119 86.6
Prupe.6G341600 Prunus persica HOM05D005403 ORTHO05D006572 6.7e-55 217.6 119 87.4
RcHm_v2.0_Chr3g0451391 Rosa chinensis HOM05D005403 ORTHO05D006572 6.7e-55 217.6 119 86.6
GSVIVG01021827001 Vitis vinifera HOM05D005403 ORTHO05D006572 6.7e-55 217.6 119 87.4
Hma1.2p1_0332F.1_g127630 Hydrangea macrophylla HOM05D005403 ORTHO05D006572 1.1e-54 216.9 119 88.2
Hund06962 Selenicereus undatus HOM05D005403 ORTHO05D006572 1.1e-54 216.9 119 84.0
SGA_v2.0_scaffold81G26087 Striga asiatica HOM05D005403 ORTHO05D006572 1.5e-54 216.5 119 88.2
MD04G1222600 Malus domestica HOM05D005403 ORTHO05D006572 1.9e-54 216.1 119 84.9
CiPaw.08G124800 Carya illinoinensis HOM05D005403 ORTHO05D006572 2.5e-54 215.7 119 84.9
Duzib177G0905 Durio zibethinus HOM05D005403 ORTHO05D006572 2.5e-54 215.7 118 88.1
Eucgr.B02113 Eucalyptus grandis HOM05D005403 ORTHO05D006572 2.5e-54 215.7 119 84.9
Thecc.05G286500 Theobroma cacao HOM05D005403 ORTHO05D006572 2.5e-54 215.7 136 77.2
Actinidia30938 Actinidia chinensis HOM05D005403 ORTHO05D006572 3.3e-54 215.3 119 87.4
HanXRQChr15g0493451 Helianthus annuus HOM05D005403 ORTHO05D006572 4.3e-54 214.9 119 84.9
MD12G1238700 Malus domestica HOM05D005403 ORTHO05D006572 4.3e-54 214.9 119 84.0
Gohir.A13G170400 Gossypium hirsutum HOM05D005403 ORTHO05D006572 5.6e-54 214.5 118 86.4
Lsat_1_v5_gn_4_137100 Lactuca sativa HOM05D005403 ORTHO05D006572 7.4e-54 214.2 119 84.9
Nitab4.5_0005582g0040 Nicotiana tabacum HOM05D005403 ORTHO05D006572 7.4e-54 214.2 119 85.7
arahy.Tifrunner.gnm1.ann1.XU8J57 Arachis hypogaea HOM05D005403 ORTHO05D006572 1.6e-53 213.0 119 82.4
Gorai.013G201200 Gossypium raimondii HOM05D005403 ORTHO05D006572 1.6e-53 213.0 118 85.6
Manes.08G133000 Manihot esculenta HOM05D005403 ORTHO05D006572 1.6e-53 213.0 119 84.9
FvH4_6g03140 Fragaria vesca HOM05D005403 ORTHO05D006572 2.1e-53 212.6 119 83.2
SalBow8G2599 Salvia bowleyana HOM05D005403 ORTHO05D006572 2.1e-53 212.6 119 82.4
FAN02G1200 Fragaria x ananassa HOM05D005403 ORTHO05D006572 2.8e-53 212.2 119 83.2
FAN05G1135 Fragaria x ananassa HOM05D005403 ORTHO05D006572 2.8e-53 212.2 119 82.4
FAN05G5291 Fragaria x ananassa HOM05D005403 ORTHO05D006572 2.8e-53 212.2 119 82.4
FAN09G2181 Fragaria x ananassa HOM05D005403 ORTHO05D006572 2.8e-53 212.2 119 83.2
TWI77G0725 Tripterygium wilfordii HOM05D005403 ORTHO05D006572 2.8e-53 212.2 119 85.7
CANSAT54G1830 Cannabis sativa HOM05D005403 ORTHO05D006572 3.7e-53 211.8 118 84.7
Ciclev10002653m.g Citrus clementina HOM05D005403 ORTHO05D006572 3.7e-53 211.8 119 82.4
CAN.G134.109 Capsicum annuum HOM05D005403 ORTHO05D006572 4.8e-53 211.5 119 86.6
Gohir.D13G175800 Gossypium hirsutum HOM05D005403 ORTHO05D006572 4.8e-53 211.5 118 84.7
Nitab4.5_0004469g0080 Nicotiana tabacum HOM05D005403 ORTHO05D006572 4.8e-53 211.5 119 84.0
Peaxi162Scf00282g00219 Petunia axillaris HOM05D005403 ORTHO05D006572 4.8e-53 211.5 119 83.2
Haze_04345 Corylus avellana HOM05D005403 ORTHO05D006572 8.1e-53 210.7 134 76.1
FAN14G0649 Fragaria x ananassa HOM05D005403 ORTHO05D006572 8.1e-53 210.7 119 81.5
Nn6g34152 Nelumbo nucifera HOM05D005403 ORTHO05D006572 8.1e-53 210.7 119 84.9
PGR083G0704 Punica granatum HOM05D005403 ORTHO05D006572 8.1e-53 210.7 137 73.7
Atru.chr2.798 Acer truncatum HOM05D005403 ORTHO05D006572 1.1e-52 210.3 120 82.5
SGA_v2.0_scaffold80G25907 Striga asiatica HOM05D005403 ORTHO05D006572 1.4e-52 209.9 119 84.9
Migut.N01905 Erythranthe guttata HOM05D005403 ORTHO05D006572 2.4e-52 209.1 121 81.8
Ah.06g192240 Amaranthus hybridus HOM05D005403 ORTHO05D006572 3.1e-52 208.8 119 83.2
AT3G04780 Arabidopsis thaliana HOM05D005403 ORTHO05D006572 3.1e-52 208.8 119 84.0
Carub.0003s0395 Capsella rubella HOM05D005403 ORTHO05D006572 3.1e-52 208.8 119 84.0
Glyma.10G161600 Glycine max HOM05D005403 ORTHO05D006572 3.1e-52 208.8 119 81.5
MBI11_g35357_MAGBIO Magnolia biondii HOM05D005403 ORTHO05D006572 3.1e-52 208.8 119 81.5
Sc09g0003870 Simmondsia chinensis HOM05D005403 ORTHO05D006572 3.1e-52 208.8 119 83.2
Nn1g02427 Nelumbo nucifera HOM05D005403 ORTHO05D006572 5.3e-52 208.0 120 84.2
AL3G14940 Arabidopsis lyrata HOM05D005403 ORTHO05D006572 6.9e-52 207.6 119 83.2
CARHR079030 Cardamine hirsuta HOM05D005403 ORTHO05D006572 6.9e-52 207.6 119 83.2
Ca_10048_v3 Cicer arietinum L. HOM05D005403 ORTHO05D006572 6.9e-52 207.6 119 79.8
PGSC0003DMG400019449 Solanum tuberosum HOM05D005403 ORTHO05D006572 9.0e-52 207.2 119 83.2
Lj5g0020047 Lotus japonicus HOM05D005403 ORTHO05D006572 1.2e-51 206.8 119 81.5
Potri.005G052100 Populus trichocarpa HOM05D005403 ORTHO05D006572 1.2e-51 206.8 119 83.2
VMungo0720G0096 Vigna mungo HOM05D005403 ORTHO05D006572 1.2e-51 206.8 119 82.4
Sp3g03620 Schrenkiella parvula HOM05D005403 ORTHO05D006572 1.5e-51 206.5 119 83.2
Sopen01g041120 Solanum pennellii HOM05D005403 ORTHO05D006572 1.5e-51 206.5 119 83.2
Aa31LG5G15180 Aethionema arabicum HOM05D005403 ORTHO05D006572 2.6e-51 205.7 119 82.4
C05p62500 Brassica napus HOM05D005403 ORTHO05D006572 2.6e-51 205.7 119 82.4
Thhalv10021632m.g Eutrema salsugineum HOM05D005403 ORTHO05D006572 3.4e-51 205.3 119 82.4
Solyc01g097450.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 3.4e-51 205.3 119 83.2
THA.LOC104818636 Tarenaya hassleriana HOM05D005403 ORTHO05D006572 4.5e-51 204.9 119 82.4
A05p42780 Brassica napus HOM05D005403 ORTHO05D006572 5.8e-51 204.5 119 81.5
Phvul.007G187000 Phaseolus vulgaris HOM05D005403 ORTHO05D006572 7.6e-51 204.1 119 80.7
AUR62001024 Chenopodium quinoa HOM05D005403 ORTHO05D006572 9.9e-51 203.8 119 79.8
Potri.013G039500 Populus trichocarpa HOM05D005403 ORTHO05D006572 9.9e-51 203.8 119 80.7
BcaB04g21347 Brassica carinata HOM05D005403 ORTHO05D006572 1.3e-50 203.4 118 82.2
BcaNung06422 Brassica carinata HOM05D005403 ORTHO05D006572 1.3e-50 203.4 118 82.2
ECA232G3347 Erigeron canadensis HOM05D005403 ORTHO05D006572 1.3e-50 203.4 117 82.1
BNapus_Darmor_BZH_scaffold_78p01010 Brassica napus HOM05D005403 ORTHO05D006572 1.7e-50 203.0 119 80.7
BolC1t05726H Brassica oleracea HOM05D005403 ORTHO05D006572 1.7e-50 203.0 119 80.7
BraA01t04505Z Brassica rapa HOM05D005403 ORTHO05D006572 1.7e-50 203.0 119 80.7
Sabra05G0045800 Salix brachista HOM05D005403 ORTHO05D006572 1.7e-50 203.0 119 82.4
BraA05t22974Z Brassica rapa HOM05D005403 ORTHO05D006572 2.9e-50 202.2 119 80.7
AUR62004927 Chenopodium quinoa HOM05D005403 ORTHO05D006572 2.9e-50 202.2 119 78.2
Cfa006448 Carpinus fangiana HOM05D005403 ORTHO05D006572 4.9e-50 201.4 107 86.0
Medtr1g080960 Medicago truncatula HOM05D005403 ORTHO05D006572 1.1e-49 200.3 120 77.5
PSO210G2729 Papaver somniferum HOM05D005403 ORTHO05D006572 1.9e-49 199.5 120 80.0
PSO832G0823 Papaver somniferum HOM05D005403 ORTHO05D006572 3.2e-49 198.7 120 79.2
Sabra13G0036900 Salix brachista HOM05D005403 ORTHO05D006572 5.5e-49 198.0 119 79.8
Lalb_Chr06g0168031 Lupinus albus HOM05D005403 ORTHO05D006572 7.1e-49 197.6 121 79.3
COL.COLO4_15309 Corchorus olitorius HOM05D005403 ORTHO05D006572 1.2e-48 196.8 108 85.2
unitig_21.g20052 Utricularia gibba HOM05D005403 ORTHO05D006572 4.6e-48 194.9 119 79.0
Aqoxy2G03453 Aquilegia oxysepala HOM05D005403 ORTHO05D006572 7.9e-48 194.1 119 76.5
Lalb_Chr02g0148771 Lupinus albus HOM05D005403 ORTHO05D006572 1.0e-47 193.7 121 76.9
DCAR_027617 Daucus carota HOM05D005403 ORTHO05D006572 1.3e-47 193.4 119 75.6
ATR0665G176 Amborella trichopoda HOM05D005403 ORTHO05D006572 2.3e-47 192.6 118 76.3
HPP92_015625 Vanilla planifolia HOM05D005403 ORTHO05D006572 2.8e-45 185.7 115 73.0
SEGI_41475 Sequoiadendron giganteum HOM05D005403 ORTHO05D006572 1.1e-44 183.7 112 75.9
Sed0002619 Sechium edule HOM05D005403 ORTHO05D006572 1.8e-44 183.0 118 71.2
CDE06G0313 Ceratophyllum demersum HOM05D005403 ORTHO05D006572 3.1e-44 182.2 120 70.8
MELO3C004371.2 Cucumis melo HOM05D005403 ORTHO05D006572 6.9e-44 181.0 118 72.0
Gohir.A11G253700 Gossypium hirsutum HOM05D005403 ORTHO05D006572 1.2e-43 180.3 125 70.4
Zm00001eb213000 Zea mays HOM05D005403 ORTHO05D006572 2.6e-43 179.1 110 73.6
ClCG02G016540 Citrullus lanatus HOM05D005403 ORTHO05D006572 5.8e-43 177.9 118 71.2
CAN.G141.8 Capsicum annuum HOM05D005403 ORTHO05D006572 2.9e-42 175.6 100 85.0
CDE07G0028 Ceratophyllum demersum HOM05D005403 ORTHO05D006572 2.9e-42 175.6 119 68.9
Os03g0795500 Oryza sativa ssp. japonica HOM05D005403 ORTHO05D006572 1.9e-41 172.9 110 70.0
CsaV3_2G004230 Cucumis sativus L. HOM05D005403 ORTHO05D006572 2.5e-41 172.6 111 72.1
Psat6g146440 Pisum sativum HOM05D005403 ORTHO05D006572 4.2e-41 171.8 119 70.6
Sed0000415 Sechium edule HOM05D005403 ORTHO05D006572 6.0e-40 167.9 118 67.8
Gohir.D11G263600 Gossypium hirsutum HOM05D005403 ORTHO05D006572 5.7e-38 161.4 122 66.4
Pp3c5_6010 Physcomitrium patens HOM05D005403 ORTHO05D006572 3.7e-37 158.7 107 65.4
QL03p025010 Quercus lobata HOM05D005403 ORTHO05D006572 1.1e-36 157.1 84 88.1
Mapoly0034s0051 Marchantia polymorpha HOM05D005403 ORTHO05D006572 4.1e-36 155.2 115 59.1
Rhsim10G0108600 Rhododendron simsii HOM05D005403 ORTHO05D006572 2.6e-35 152.5 239 41.8
Lj7A489G21 Lonicera japonica HOM05D005403 ORTHO05D006572 2.2e-34 149.4 78 91.0
SMO340G0197 Selaginella moellendorffii HOM05D005403 ORTHO05D006572 3.8e-34 148.7 105 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2056 Anthoceros agrestis HOM05D005403 ORTHO05D006572 6.5e-34 147.9 105 61.0
TPR.G30942 Trifolium pratense HOM05D005403 ORTHO05D006572 1.9e-33 146.4 92 76.1
EL10Ac4g09116 Beta vulgaris HOM05D005403 ORTHO05D006572 6.1e-32 141.4 106 67.0
Pp3c6_27050 Physcomitrium patens HOM05D005403 ORTHO05D006572 9.7e-30 134.0 141 46.8
Sopen04g005140 Solanum pennellii HOM05D005403 ORTHO05D006572 1.7e-29 133.3 108 60.2
PGSC0003DMG400011476 Solanum tuberosum HOM05D005403 ORTHO05D006572 1.7e-29 133.3 108 62.0
Zm00001eb060640 Zea mays HOM05D005403 ORTHO05D006572 4.1e-28 128.6 120 55.0
vmacro05240 Vaccinium macrocarpon HOM05D005403 ORTHO05D006572 2.6e-27 125.9 312 32.4
Solyc04g010010.3 Solanum lycopersicum HOM05D005403 ORTHO05D006572 3.4e-27 125.6 108 57.4
Solyc04g010030.1 Solanum lycopersicum HOM05D005403 ORTHO05D006572 5.9e-27 124.8 107 60.7
Sopen04g005160 Solanum pennellii HOM05D005403 ORTHO05D006572 5.9e-27 124.8 107 60.7
CBR_g8269 Chara braunii HOM05D005403 ORTHO05D006572 5.5e-25 118.2 112 55.4
Gorai.007G283600 Gossypium raimondii HOM05D005403 ORTHO05D006572 5.5e-25 118.2 122 53.3
PRCOL_00004155 Prasinoderma coloniale HOM05D005403 ORTHO05D006572 7.4e-22 107.8 109 47.7
Cre17.g730250 Chlamydomonas reinhardtii HOM05D005403 ORTHO05D006572 9.7e-22 107.5 101 48.5
MCO08G264 Micromonas commoda HOM05D005403 ORTHO05D006572 1.0e-18 97.4 116 42.2
Haze_27143 Corylus avellana HOM05D005403 ORTHO05D006572 8.2e-13 77.8 81 46.9
Cc02_g31890 Coffea canephora HOM05D005403 ORTHO05D006572 2.4e-12 76.3 42 83.3
Pp3s396_10 Physcomitrium patens HOM05D050862 ORTHO05D006572 1.2e-11 73.9 86 40.7
CSS0036106 Camellia sinensis var. sinensis HOM05D005403 ORTHO05D006572 3.2e-09 65.9 43 69.8
TPR.G32522 Trifolium pratense HOM05D005403 ORTHO05D006572 7.2e-09 64.7 36 77.8
DCAR_011699 Daucus carota HOM05D005403 ORTHO05D006572 3.6e-08 62.4 38 68.4
Aa31LG5G9740 Aethionema arabicum HOM05D006661 ORTHO05D008369 1.4e-07 60.5 114 34.2
Thhalv10002098m.g Eutrema salsugineum HOM05D006661 ORTHO05D008369 2.3e-07 59.7 114 33.3
AL4G18030 Arabidopsis lyrata HOM05D006661 ORTHO05D008369 4.0e-07 58.9 114 33.3
BcaB06g29613 Brassica carinata HOM05D006661 ORTHO05D008369 4.0e-07 58.9 114 33.3
CBR_g22258 Chara braunii HOM05D006661 ORTHO05D008369 4.0e-07 58.9 108 33.3
Mapoly0027s0002 Marchantia polymorpha HOM05D006661 ORTHO05D008369 4.0e-07 58.9 131 32.1
AT2G25950 Arabidopsis thaliana HOM05D006661 ORTHO05D008369 6.7e-07 58.2 114 33.3
Carub.0004s0581 Capsella rubella HOM05D006661 ORTHO05D008369 6.7e-07 58.2 114 33.3
THA.LOC104803733 Tarenaya hassleriana HOM05D006661 ORTHO05D008369 6.7e-07 58.2 95 34.7
CARHR287330 Cardamine hirsuta HOM05D006661 ORTHO05D008369 1.2e-06 57.4 114 33.3
AagrBONN_evm.TU.Sc2ySwM_362.2052 Anthoceros agrestis HOM05D006661 ORTHO05D008369 1.5e-06 57.0 114 34.2
BcaC02g08315 Brassica carinata HOM05D006661 ORTHO05D008369 1.5e-06 57.0 114 32.5
A04p20170 Brassica napus HOM05D006661 ORTHO05D008369 1.5e-06 57.0 114 32.5
C04p55870 Brassica napus HOM05D006661 ORTHO05D008369 1.5e-06 57.0 114 32.5
BolC4t27119H Brassica oleracea HOM05D006661 ORTHO05D008369 1.5e-06 57.0 114 32.5
BraA04t17597Z Brassica rapa HOM05D006661 ORTHO05D008369 1.5e-06 57.0 114 32.5
Sp4g05860 Schrenkiella parvula HOM05D006661 ORTHO05D008369 2.0e-06 56.6 114 31.6
CsaV3_2G025680 Cucumis sativus L. HOM05D006661 ORTHO05D008369 3.3e-06 55.8 114 33.3
Ciclev10009515m.g Citrus clementina HOM05D006661 ORTHO05D008369 4.4e-06 55.5 96 33.3
Pp3c22_18330 Physcomitrium patens HOM05D006661 ORTHO05D008369 4.4e-06 55.5 108 32.4
Cfa026513 Carpinus fangiana HOM05D006661 ORTHO05D008369 9.7e-06 54.3 73 37.0


User provided reference genes

Program Settings