Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05362 Davidia involucrata HOM05D004982 ORTHO05D002186 1.6e-85 319.3 149 100.0
Dinv21279 Davidia involucrata HOM05D004982 ORTHO05D002186 6.8e-33 144.4 72 95.8
DCAR_019701 Daucus carota HOM05D004982 ORTHO05D002186 1.8e-25 119.8 56 91.1
CSS0012122 Camellia sinensis var. sinensis HOM05D004982 ORTHO05D002186 3.4e-24 115.5 65 80.0
CSS0024183 Camellia sinensis var. sinensis HOM05D004982 ORTHO05D002186 3.4e-24 115.5 71 73.2
DCAR_021099 Daucus carota HOM05D004982 ORTHO05D002186 1.7e-23 113.2 64 82.8
Duzib211G0315 Durio zibethinus HOM05D004982 ORTHO05D002186 6.4e-23 111.3 74 73.0
Cfa014236 Carpinus fangiana HOM05D004982 ORTHO05D002186 8.4e-23 110.9 68 76.5
Duzib133G0730 Durio zibethinus HOM05D004982 ORTHO05D002186 2.4e-22 109.4 75 72.0
Duzib138G0769 Durio zibethinus HOM05D004982 ORTHO05D002186 2.4e-22 109.4 66 75.8
Gohir.A07G191100 Gossypium hirsutum HOM05D004982 ORTHO05D002186 4.2e-22 108.6 71 70.4
MSTRG.12246 Avicennia marina HOM05D004982 ORTHO05D002186 5.4e-22 108.2 72 70.8
Gohir.D07G197500 Gossypium hirsutum HOM05D004982 ORTHO05D002186 5.4e-22 108.2 71 70.4
Gorai.001G221200 Gossypium raimondii HOM05D004982 ORTHO05D002186 5.4e-22 108.2 71 70.4
Hma1.2p1_1223F.1_g268400 Hydrangea macrophylla HOM05D004982 ORTHO05D002186 7.1e-22 107.8 99 55.6
Thecc.01G192300 Theobroma cacao HOM05D004982 ORTHO05D002186 7.1e-22 107.8 66 74.2
TAR627G1196 Trochodendron aralioides HOM05D004982 ORTHO05D002186 7.1e-22 107.8 59 78.0
Cpa.g.sc211.16 Carica papaya HOM05D004982 ORTHO05D002186 9.3e-22 107.5 57 82.5
Gohir.D07G092300 Gossypium hirsutum HOM05D004982 ORTHO05D002186 9.3e-22 107.5 71 71.8
Potri.014G165700 Populus trichocarpa HOM05D004982 ORTHO05D002186 9.3e-22 107.5 55 85.5
Actinidia07875 Actinidia chinensis HOM05D004982 ORTHO05D002186 1.2e-21 107.1 64 73.4
Actinidia27650 Actinidia chinensis HOM05D004982 ORTHO05D002186 1.2e-21 107.1 64 73.4
CiPaw.04G196500 Carya illinoinensis HOM05D004982 ORTHO05D002186 1.6e-21 106.7 58 77.6
Haze_12653 Corylus avellana HOM05D004982 ORTHO05D002186 1.6e-21 106.7 68 75.0
Gorai.001G098900 Gossypium raimondii HOM05D004982 ORTHO05D002186 1.6e-21 106.7 71 70.4
Sabra14G0126300 Salix brachista HOM05D004982 ORTHO05D002186 2.1e-21 106.3 56 80.4
COL.COLO4_33355 Corchorus olitorius HOM05D004982 ORTHO05D002186 2.7e-21 105.9 67 74.6
MD17G1114700 Malus domestica HOM05D004982 ORTHO05D002186 2.7e-21 105.9 67 71.6
Manes.12G065100 Manihot esculenta HOM05D004982 ORTHO05D002186 2.7e-21 105.9 54 85.2
Haze_12651 Corylus avellana HOM05D004982 ORTHO05D002186 3.5e-21 105.5 68 73.5
TWI23G0673 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 3.5e-21 105.5 62 75.8
MD09G1123900 Malus domestica HOM05D004982 ORTHO05D002186 4.6e-21 105.1 75 65.3
RcHm_v2.0_Chr2g0156431 Rosa chinensis HOM05D004982 ORTHO05D002186 6.0e-21 104.8 62 72.6
CANSAT64G0146 Cannabis sativa HOM05D004982 ORTHO05D002186 7.8e-21 104.4 56 78.6
Prupe.3G200200 Prunus persica HOM05D004982 ORTHO05D002186 1.0e-20 104.0 56 83.9
Actinidia09785 Actinidia chinensis HOM05D004982 ORTHO05D002186 1.3e-20 103.6 75 66.7
VMungo0647G1787 Vigna mungo HOM05D004982 ORTHO05D002186 1.3e-20 103.6 79 65.8
Gohir.D07G197600 Gossypium hirsutum HOM05D004982 ORTHO05D002186 1.7e-20 103.2 56 82.1
Oeu029969.1 Olea europaea HOM05D004982 ORTHO05D002186 2.3e-20 102.8 61 70.5
QL08p028387 Quercus lobata HOM05D004982 ORTHO05D002186 2.3e-20 102.8 56 76.8
Gohir.A07G191200 Gossypium hirsutum HOM05D004982 ORTHO05D002186 3.0e-20 102.4 56 82.1
Cc05_g02080 Coffea canephora HOM05D004982 ORTHO05D002186 3.9e-20 102.1 72 63.9
Cc05_g02090 Coffea canephora HOM05D004982 ORTHO05D002186 3.9e-20 102.1 72 63.9
Eucgr.A01039 Eucalyptus grandis HOM05D004982 ORTHO05D002186 3.9e-20 102.1 55 80.0
Nn1g03222 Nelumbo nucifera HOM05D004982 ORTHO05D002186 3.9e-20 102.1 57 77.2
Peaxi162Scf00776g00012 Petunia axillaris HOM05D004982 ORTHO05D002186 3.9e-20 102.1 57 82.5
Nn1g07475 Nelumbo nucifera HOM05D004982 ORTHO05D002186 5.1e-20 101.7 55 80.0
Phvul.008G284300 Phaseolus vulgaris HOM05D004982 ORTHO05D002186 5.1e-20 101.7 79 65.8
FvH4_6g40870 Fragaria vesca HOM05D004982 ORTHO05D002186 6.6e-20 101.3 50 84.0
FAN02G0651 Fragaria x ananassa HOM05D004982 ORTHO05D002186 6.6e-20 101.3 50 84.0
FAN05G3922 Fragaria x ananassa HOM05D004982 ORTHO05D002186 6.6e-20 101.3 50 84.0
FAN09G2641 Fragaria x ananassa HOM05D004982 ORTHO05D002186 6.6e-20 101.3 50 84.0
FAN14G0821 Fragaria x ananassa HOM05D004982 ORTHO05D002186 6.6e-20 101.3 50 84.0
Lsat_1_v5_gn_5_121881 Lactuca sativa HOM05D004982 ORTHO05D002186 6.6e-20 101.3 50 82.0
Gorai.001G221300 Gossypium raimondii HOM05D004982 ORTHO05D002186 8.7e-20 100.9 56 80.4
TWI75G0082 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 1.5e-19 100.1 64 70.3
Nitab4.5_0002987g0020 Nicotiana tabacum HOM05D004982 ORTHO05D002186 3.3e-19 99.0 56 76.8
TWI18G1163 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 3.3e-19 99.0 55 78.2
TAR629G0570 Trochodendron aralioides HOM05D004982 ORTHO05D002186 4.3e-19 98.6 54 81.5
Lsat_1_v5_gn_9_104061 Lactuca sativa HOM05D004982 ORTHO05D002186 7.3e-19 97.8 76 57.9
Nitab4.5_0001166g0010 Nicotiana tabacum HOM05D004982 ORTHO05D002186 7.3e-19 97.8 56 75.0
GSVIVG01030062001 Vitis vinifera HOM05D000053 ORTHO05D002186 7.3e-19 97.8 56 78.6
CiPaw.03G280400 Carya illinoinensis HOM05D004982 ORTHO05D002186 9.6e-19 97.4 67 68.7
Peaxi162Scf00147g01916 Petunia axillaris HOM05D004982 ORTHO05D002186 1.3e-18 97.1 70 64.3
SalBow7G1604 Salvia bowleyana HOM05D004982 ORTHO05D002186 1.3e-18 97.1 55 72.7
Glyma.14G009000 Glycine max HOM05D004982 ORTHO05D002186 1.6e-18 96.7 57 78.9
Atru.chr6.3374 Acer truncatum HOM05D004982 ORTHO05D002186 2.8e-18 95.9 55 76.4
Solyc07g047680.3 Solanum lycopersicum HOM05D004982 ORTHO05D002186 2.8e-18 95.9 51 80.4
PGSC0003DMG400006123 Solanum tuberosum HOM05D004982 ORTHO05D002186 2.8e-18 95.9 51 80.4
CAN.G1036.3 Capsicum annuum HOM05D004982 ORTHO05D002186 3.6e-18 95.5 51 78.4
Lalb_Chr04g0247341 Lupinus albus HOM05D004982 ORTHO05D002186 6.2e-18 94.7 57 75.4
Solyc05g040040.1 Solanum lycopersicum HOM05D004982 ORTHO05D002186 6.2e-18 94.7 54 75.9
Sopen05g025150 Solanum pennellii HOM05D004982 ORTHO05D002186 6.2e-18 94.7 54 75.9
arahy.Tifrunner.gnm1.ann1.IU3Y9Z Arachis hypogaea HOM05D004982 ORTHO05D002186 8.1e-18 94.4 56 78.6
arahy.Tifrunner.gnm1.ann1.M8NM2L Arachis hypogaea HOM05D004982 ORTHO05D002186 8.1e-18 94.4 56 78.6
Glyma.02G304900 Glycine max HOM05D004982 ORTHO05D002186 8.1e-18 94.4 57 77.2
PGSC0003DMG400018830 Solanum tuberosum HOM05D004982 ORTHO05D002186 8.1e-18 94.4 54 75.9
Aqoxy4G02235 Aquilegia oxysepala HOM05D004982 ORTHO05D002186 1.1e-17 94.0 55 74.5
HanXRQChr12g0373981 Helianthus annuus HOM05D004982 ORTHO05D002186 1.1e-17 94.0 49 79.6
Psat2g004800 Pisum sativum HOM05D004982 ORTHO05D002186 1.4e-17 93.6 75 61.3
ClCG02G009320 Citrullus lanatus HOM05D004982 ORTHO05D002186 2.4e-17 92.8 60 66.7
CsaV3_6G009570 Cucumis sativus L. HOM05D004982 ORTHO05D002186 2.4e-17 92.8 60 66.7
EL10Ac9g22690 Beta vulgaris HOM05D004982 ORTHO05D002186 4.0e-17 92.0 56 73.2
Ciclev10016961m.g Citrus clementina HOM05D004982 ORTHO05D002186 4.0e-17 92.0 55 76.4
Sopen07g024130 Solanum pennellii HOM05D004982 ORTHO05D002186 4.0e-17 92.0 51 78.4
HanXRQChr14g0458611 Helianthus annuus HOM05D004982 ORTHO05D002186 5.3e-17 91.7 81 56.8
Rhsim06G0174900 Rhododendron simsii HOM05D004982 ORTHO05D002186 5.3e-17 91.7 53 73.6
Ca_06447_v3 Cicer arietinum L. HOM05D004982 ORTHO05D002186 6.9e-17 91.3 65 69.2
MELO3C025964.2 Cucumis melo HOM05D004982 ORTHO05D002186 6.9e-17 91.3 60 65.0
Sed0018645 Sechium edule HOM05D004982 ORTHO05D002186 9.0e-17 90.9 64 67.2
Lj8P134T70 Lonicera japonica HOM05D004982 ORTHO05D002186 1.2e-16 90.5 43 90.7
TWI36G1761 Tripterygium wilfordii HOM05D004982 ORTHO05D002186 1.2e-16 90.5 47 80.9
Oeu064360.1 Olea europaea HOM05D004982 ORTHO05D002186 2.0e-16 89.7 55 67.3
vmacro12098 Vaccinium macrocarpon HOM05D004982 ORTHO05D002186 2.0e-16 89.7 52 75.0
TPR.G1238 Trifolium pratense HOM05D004982 ORTHO05D002186 2.6e-16 89.4 54 75.9
Rhsim01G0200200 Rhododendron simsii HOM05D004982 ORTHO05D002186 4.5e-16 88.6 53 71.7
Migut.M00043 Erythranthe guttata HOM05D004982 ORTHO05D002186 5.8e-16 88.2 43 86.0
Medtr5g097150 Medicago truncatula HOM05D004982 ORTHO05D002186 5.8e-16 88.2 54 74.1
HanXRQChr03g0075171 Helianthus annuus HOM05D004982 ORTHO05D002186 7.6e-16 87.8 74 56.8
Sed0011483 Sechium edule HOM05D004982 ORTHO05D002186 9.9e-16 87.4 57 68.4
AUR62015019 Chenopodium quinoa HOM05D004982 ORTHO05D002186 1.7e-15 86.7 52 71.2
Sed0002771 Sechium edule HOM05D004982 ORTHO05D002186 2.2e-15 86.3 53 67.9
Lalb_Chr04g0247541 Lupinus albus HOM05D004982 ORTHO05D002186 3.8e-15 85.5 77 61.0
ClCG02G002810 Citrullus lanatus HOM05D004982 ORTHO05D002186 8.4e-15 84.3 61 63.9
Sc21g0000640 Simmondsia chinensis HOM05D004982 ORTHO05D002186 8.4e-15 84.3 53 67.9
Sc21g0000690 Simmondsia chinensis HOM05D004982 ORTHO05D002186 8.4e-15 84.3 53 67.9
CDE05G0636 Ceratophyllum demersum HOM05D004982 ORTHO05D002186 1.9e-14 83.2 56 64.3
LjContig00081g0025622 Lotus japonicus HOM05D004982 ORTHO05D002186 2.4e-14 82.8 73 58.9
PGR042G3175 Punica granatum HOM05D004982 ORTHO05D002186 2.4e-14 82.8 54 66.7
BcaC06g30821 Brassica carinata HOM05D004982 ORTHO05D002186 1.2e-13 80.5 68 55.9
C09p04650 Brassica napus HOM05D004982 ORTHO05D002186 1.6e-13 80.1 49 69.4
AL8G20840 Arabidopsis lyrata HOM05D004982 ORTHO05D002186 2.1e-13 79.7 49 71.4
A06p39340 Brassica napus HOM05D004982 ORTHO05D002186 2.7e-13 79.3 59 62.7
C07p38930 Brassica napus HOM05D004982 ORTHO05D002186 2.7e-13 79.3 59 62.7
BolC7t44413H Brassica oleracea HOM05D004982 ORTHO05D002186 2.7e-13 79.3 59 62.7
BraA06t26849Z Brassica rapa HOM05D004982 ORTHO05D002186 2.7e-13 79.3 59 62.7
Carub.0008s0774 Capsella rubella HOM05D004982 ORTHO05D002186 3.5e-13 79.0 68 51.5
AT5G48170 Arabidopsis thaliana HOM05D004982 ORTHO05D002186 4.6e-13 78.6 48 70.8
Thhalv10005063m.g Eutrema salsugineum HOM05D004982 ORTHO05D002186 4.6e-13 78.6 59 62.7
Sp2g18570 Schrenkiella parvula HOM05D004982 ORTHO05D002186 4.6e-13 78.6 59 62.7
BcaB04g19561 Brassica carinata HOM05D004982 ORTHO05D002186 6.0e-13 78.2 49 69.4
BcaB07g30005 Brassica carinata HOM05D004982 ORTHO05D002186 6.0e-13 78.2 48 70.8
BcaC03g17634 Brassica carinata HOM05D004982 ORTHO05D002186 6.0e-13 78.2 48 70.8
A02p37280 Brassica napus HOM05D004982 ORTHO05D002186 6.0e-13 78.2 48 70.8
BolC9t53392H Brassica oleracea HOM05D004982 ORTHO05D002186 6.0e-13 78.2 49 69.4
BraA02t08714Z Brassica rapa HOM05D004982 ORTHO05D002186 6.0e-13 78.2 48 70.8
CARHR184160 Cardamine hirsuta HOM05D004982 ORTHO05D002186 6.0e-13 78.2 49 71.4
AUR62029094 Chenopodium quinoa HOM05D004982 ORTHO05D002186 7.9e-13 77.8 55 63.6
BcaB04g19555 Brassica carinata HOM05D004982 ORTHO05D002186 1.0e-12 77.4 49 69.4
BcaB04g19556 Brassica carinata HOM05D004982 ORTHO05D002186 1.0e-12 77.4 49 69.4
BcaC04g23789 Brassica carinata HOM05D004982 ORTHO05D002186 1.0e-12 77.4 49 69.4
A09p04340 Brassica napus HOM05D004982 ORTHO05D002186 1.3e-12 77.0 49 69.4
BraA09t36071Z Brassica rapa HOM05D004982 ORTHO05D002186 1.3e-12 77.0 49 67.3
Aa31sc299G10 Aethionema arabicum HOM05D004982 ORTHO05D002186 6.7e-12 74.7 70 51.4
C02p56310 Brassica napus HOM05D004982 ORTHO05D002186 8.7e-12 74.3 48 68.8
BolC2t11687H Brassica oleracea HOM05D004982 ORTHO05D002186 8.7e-12 74.3 48 68.8
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 1.1e-11 73.9 50 64.0
THA.LOC104819038 Tarenaya hassleriana HOM05D004982 ORTHO05D002186 1.1e-11 73.9 50 68.0
Zm00001eb401080 Zea mays HOM05D004982 ORTHO05D002186 1.5e-11 73.6 63 55.6
SGA_v2.0_scaffold73G24499 Striga asiatica HOM05D004982 ORTHO05D002186 3.3e-11 72.4 50 66.0
Zm00001eb008130 Zea mays HOM05D004982 ORTHO05D002186 3.3e-11 72.4 47 66.0
Os03g0196500 Oryza sativa ssp. japonica HOM05D004982 ORTHO05D002186 5.6e-11 71.6 47 63.8
SGA_v2.0_scaffold181G39685 Striga asiatica HOM05D004982 ORTHO05D002186 9.6e-11 70.9 58 50.0
Hma1.2p1_0545F.1_g176050 Hydrangea macrophylla HOM05D004982 ORTHO05D002186 8.1e-10 67.8 34 88.2
HPP92_021281 Vanilla planifolia HOM05D004982 ORTHO05D002186 1.1e-09 67.4 56 53.6


User provided reference genes

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