Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 4.1e-136 488.0 242 100.0
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 9.6e-93 344.0 244 71.3
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 1.1e-91 340.5 243 70.0
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 2.0e-90 336.3 244 66.8
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 7.6e-90 334.3 243 69.5
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 5.4e-88 328.2 243 64.2
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 3.5e-87 325.5 244 67.2
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 6.6e-86 321.2 242 64.9
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 2.0e-82 309.7 244 63.5
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 6.4e-81 304.7 244 59.4
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 6.4e-81 304.7 243 64.6
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 9.3e-80 300.8 244 60.7
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 9.3e-80 300.8 244 61.1
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.5e-79 298.9 244 61.1
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 6.0e-79 298.1 244 61.1
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 1.0e-78 297.4 244 60.2
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.3e-78 296.2 244 61.1
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 8.7e-78 294.3 244 60.7
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 1.1e-77 293.9 245 58.0
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 3.3e-77 292.4 243 60.1
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 4.3e-77 292.0 244 59.8
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 3.6e-76 288.9 243 62.6
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 1.5e-74 283.5 243 60.1
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 2.6e-74 282.7 243 56.4
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 4.5e-74 282.0 243 56.8
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 9.9e-74 280.8 243 57.6
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 4.9e-73 278.5 245 55.5
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 1.4e-72 276.9 248 54.4
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 1.6e-71 273.5 244 54.9
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 1.6e-71 273.5 243 56.8
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 2.7e-71 272.7 246 58.5
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 3.5e-71 272.3 243 56.4
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 3.5e-71 272.3 243 55.6
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 6.0e-71 271.6 246 57.3
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 1.8e-70 270.0 245 53.5
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 3.9e-70 268.9 248 52.4
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 8.7e-70 267.7 244 53.3
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 1.6e-68 263.5 244 53.7
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 1.6e-68 263.5 244 55.7
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 2.1e-68 263.1 244 50.4
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 1.4e-67 260.4 244 52.5
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 1.8e-67 260.0 244 51.2
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 3.1e-67 259.2 244 53.3
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 5.3e-67 258.5 244 52.5
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 5.3e-67 258.5 245 51.8
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 6.9e-67 258.1 243 54.7
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 6.9e-67 258.1 246 56.1
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 1.2e-66 257.3 203 65.0
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 1.5e-66 256.9 244 51.6
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 4.5e-66 255.4 233 56.2
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 7.6e-66 254.6 243 53.9
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 6.5e-65 251.5 243 53.9
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 6.5e-65 251.5 246 51.2
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 7.1e-64 248.1 244 51.6
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 9.3e-64 247.7 246 52.4
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 9.3e-64 247.7 243 52.7
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 2.7e-63 246.1 244 50.4
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 1.8e-62 243.4 244 52.0
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 1.8e-62 243.4 244 52.0
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 1.8e-62 243.4 243 52.3
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 2.3e-62 243.0 244 51.6
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 2.3e-62 243.0 244 51.6
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 3.0e-62 242.7 244 50.8
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 5.1e-62 241.9 267 49.4
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 6.7e-62 241.5 293 44.0
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 8.7e-62 241.1 244 52.0
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 1.5e-61 240.4 186 67.7
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 4.3e-61 238.8 243 52.7
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 9.6e-61 237.7 239 51.5
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 1.3e-60 237.3 244 49.2
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 3.1e-59 232.6 168 69.0
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 1.2e-58 230.7 246 50.4
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 2.2e-57 226.5 222 51.4
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 5.0e-57 225.3 201 56.7
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 8.4e-57 224.6 244 50.0
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 1.9e-56 223.4 244 48.4
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 2.7e-55 219.5 174 62.6
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 3.3e-53 212.6 248 49.6
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 1.4e-51 207.2 206 51.0
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 1.7e-49 200.3 244 43.9
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.2e-48 196.1 244 44.7
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 2.1e-47 193.4 252 44.4
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 2.3e-46 189.9 249 43.4
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 1.3e-44 184.1 184 51.1
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 2.2e-44 183.3 251 40.2
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 2.8e-44 183.0 251 40.2
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 4.8e-44 182.2 251 40.2
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 6.3e-44 181.8 175 49.7
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 1.1e-43 181.0 252 42.9
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 1.1e-43 181.0 240 38.3
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 5.3e-43 178.7 242 37.6
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 1.2e-39 167.5 203 44.3
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 8.8e-38 161.4 237 40.1
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 1.3e-36 157.5 175 46.9
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 1.8e-35 153.7 164 45.1
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 1.7e-33 147.1 232 38.8
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 1.3e-28 131.0 254 33.9
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 5.2e-22 109.0 94 61.7
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 4.7e-15 85.9 72 59.7
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.0e-14 84.7 73 54.8
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 3.1e-11 73.2 70 51.4
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 3.1e-11 73.2 99 44.4
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 5.2e-06 55.8 44 52.3


User provided reference genes

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