Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 7.0e-240 833.6 426 100.0
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 6.8e-219 763.8 426 92.0
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.1e-200 703.4 428 83.4
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.9e-200 702.6 397 88.4
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 5.4e-200 701.0 394 88.6
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.6e-199 699.5 427 83.1
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 5.1e-198 694.5 428 82.9
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 3.3e-197 691.8 427 82.7
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 5.6e-197 691.0 428 82.9
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 1.2e-196 689.9 426 83.1
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.6e-196 689.5 428 81.3
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 8.1e-196 687.2 428 82.2
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 6.9e-195 684.1 428 80.8
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 9.0e-195 683.7 428 81.8
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.2e-194 683.3 428 81.8
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.5e-194 682.9 426 82.4
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.5e-194 682.9 426 82.4
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.6e-194 682.2 428 81.1
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 3.4e-194 681.8 426 81.7
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 3.4e-194 681.8 426 81.5
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 5.8e-194 681.0 426 81.2
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 5.8e-194 681.0 429 81.6
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 9.9e-194 680.2 426 80.0
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 2.2e-193 679.1 428 81.8
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 4.9e-193 677.9 426 80.0
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 1.4e-192 676.4 426 80.8
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 4.2e-192 674.9 428 81.3
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 4.2e-192 674.9 427 81.0
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 7.1e-192 674.1 429 80.9
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 9.3e-192 673.7 427 81.5
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.6e-191 672.9 431 79.8
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 1.6e-191 672.9 426 81.2
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 2.7e-191 672.2 430 79.8
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 3.5e-191 671.8 426 81.0
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 4.6e-191 671.4 431 79.6
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 4.6e-191 671.4 427 79.4
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 6.0e-191 671.0 427 80.6
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.0e-190 670.2 426 80.3
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 1.0e-190 670.2 426 80.0
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 1.3e-190 669.8 431 81.9
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 1.7e-190 669.5 426 80.3
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 1.7e-190 669.5 426 79.6
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 2.3e-190 669.1 426 81.2
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 3.0e-190 668.7 426 80.0
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 3.9e-190 668.3 426 79.8
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 5.1e-190 667.9 427 79.9
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 5.1e-190 667.9 392 85.2
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 5.6e-189 664.5 427 80.1
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 5.6e-189 664.5 428 80.8
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 7.3e-189 664.1 428 80.1
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 7.3e-189 664.1 429 80.2
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 1.3e-188 663.3 428 80.4
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 3.6e-188 661.8 426 79.6
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 6.2e-188 661.0 426 79.3
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 4.0e-187 658.3 394 83.0
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 6.9e-187 657.5 426 80.3
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 5.8e-186 654.4 392 83.2
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 7.6e-186 654.1 431 77.7
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 9.9e-186 653.7 429 78.3
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.2e-185 652.5 395 82.5
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 4.9e-185 651.4 406 82.5
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 4.9e-185 651.4 423 78.5
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 4.2e-184 648.3 423 78.3
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 7.1e-184 647.5 392 82.7
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 3.5e-183 645.2 427 77.0
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 4.6e-183 644.8 408 81.6
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 6.0e-183 644.4 411 82.5
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 7.9e-183 644.0 430 77.2
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 7.9e-183 644.0 427 77.3
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 2.3e-182 642.5 431 77.3
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 2.3e-182 642.5 377 84.9
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 3.0e-182 642.1 397 83.1
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 8.7e-182 640.6 406 80.8
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 8.7e-182 640.6 426 76.8
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.5e-181 639.8 408 81.1
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 1.9e-181 639.4 427 77.5
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 2.5e-181 639.0 431 78.4
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.6e-181 637.9 413 79.4
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 5.6e-181 637.9 408 80.6
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 4.8e-180 634.8 410 80.0
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 4.8e-180 634.8 392 80.9
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 2.4e-179 632.5 427 76.6
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 2.4e-179 632.5 416 77.6
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 4.0e-179 631.7 427 77.0
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 6.9e-179 630.9 427 76.6
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 1.2e-178 630.2 427 76.3
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.8e-178 627.9 432 75.7
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 5.8e-178 627.9 385 82.6
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.3e-177 626.7 429 75.1
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 1.7e-177 626.3 426 75.8
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 2.2e-177 625.9 431 75.6
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 4.9e-177 624.8 432 75.2
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 4.9e-177 624.8 385 82.1
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.4e-176 622.5 431 75.2
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 5.5e-176 621.3 426 74.9
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 5.5e-176 621.3 426 74.9
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 5.5e-176 621.3 432 75.2
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 7.1e-176 620.9 427 75.9
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 9.3e-176 620.5 427 74.9
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 1.6e-175 619.8 428 75.2
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.6e-175 619.8 431 75.6
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.7e-175 619.0 432 75.0
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 4.6e-175 618.2 428 75.0
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.0e-175 617.8 426 75.1
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 3.0e-174 615.5 429 73.9
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 3.0e-174 615.5 429 73.9
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 3.0e-174 615.5 429 73.9
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 3.0e-174 615.5 411 76.9
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 3.9e-174 615.1 426 74.6
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 5.1e-174 614.8 426 74.2
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 5.1e-174 614.8 431 75.4
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.7e-174 614.0 426 74.2
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 1.9e-173 612.8 392 79.8
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 2.5e-173 612.5 413 76.3
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 5.6e-173 611.3 431 73.5
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.6e-172 609.8 430 73.3
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 1.6e-172 609.8 426 73.9
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 4.0e-171 605.1 354 84.2
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 1.2e-170 603.6 335 87.8
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 4.5e-170 601.7 426 73.0
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 7.6e-170 600.9 429 72.0
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.1e-168 597.0 380 79.5
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 4.2e-168 595.1 455 71.2
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.6e-167 593.2 423 71.4
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 3.5e-167 592.0 426 73.9
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.0e-166 590.5 474 67.3
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 3.3e-165 585.5 392 75.3
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 3.1e-163 578.9 379 78.1
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 3.1e-163 578.9 442 70.4
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 1.0e-161 573.9 426 70.7
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 3.3e-157 558.9 320 86.6
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 8.2e-156 554.3 374 72.5
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 1.2e-154 550.4 322 83.9
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 1.2e-154 550.4 439 69.9
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 7.7e-154 547.7 427 67.4
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 2.2e-153 546.2 415 71.6
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.4e-152 543.5 375 72.8
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.8e-147 526.6 371 69.8
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 4.5e-146 521.9 417 68.1
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 2.9e-145 519.2 372 71.5
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.2e-143 513.8 436 62.4
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 1.1e-141 507.3 373 73.2
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 2.9e-137 492.7 432 59.3
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 5.5e-136 488.4 397 68.3
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.5e-133 480.3 384 64.1
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 4.1e-131 472.2 394 63.2
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 6.5e-129 464.9 337 73.6
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 5.5e-128 461.8 369 67.2
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.0e-121 441.0 241 90.9
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.2e-117 427.6 335 67.2
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 8.0e-111 404.8 271 73.8
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.6e-106 390.6 231 82.7
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.1e-103 380.2 211 90.5
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.1e-96 357.8 406 49.3
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.6e-95 354.0 390 49.0
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 2.1e-90 337.0 391 49.9
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 2.4e-86 323.6 273 58.6
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 3.8e-84 316.2 353 56.1
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.2e-83 313.2 196 77.6
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 1.4e-70 271.2 151 86.8
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 1.2e-66 258.1 222 63.1
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 7.9e-66 255.4 428 42.1
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 9.6e-64 248.4 292 46.6
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 2.8e-63 246.9 302 47.4
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 3.2e-59 233.4 214 59.8
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.1e-58 230.7 304 42.1
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 1.9e-51 207.6 120 80.8
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.3e-49 200.7 182 59.9
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 3.0e-33 147.1 75 94.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 2.0e-32 144.4 138 61.6
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 8.0e-26 122.5 69 85.5
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 1.8e-25 121.3 88 71.6
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 7.0e-22 109.4 75 69.3
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.9e-19 101.3 54 83.3
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 4.0e-17 93.6 61 70.5
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 1.7e-15 88.2 123 48.8
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 3.1e-14 84.0 95 51.6
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 3.1e-14 84.0 84 52.4
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 2.7e-13 80.9 60 65.0
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 3.5e-13 80.5 123 41.5
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 8.8e-09 65.9 141 37.6
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 3.7e-07 60.5 55 58.2
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 3.1e-06 57.4 35 71.4
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 5.4e-06 56.6 36 72.2
TPR.G39825 Trifolium pratense HOM05D003740 ORTHO05D411371 5.4e-06 56.6 33 78.8


User provided reference genes

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