Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 1.7e-31 138.7 66 100.0
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 3.6e-26 120.9 60 96.7
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 2.6e-24 114.8 60 90.0
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 5.7e-24 113.6 60 88.3
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 7.5e-24 113.2 60 90.0
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 7.5e-24 113.2 60 90.0
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 8.3e-23 109.8 60 85.0
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.1e-22 109.4 60 83.3
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 2.4e-22 108.2 60 83.3
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 4.1e-22 107.5 60 81.7
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 9.1e-22 106.3 60 80.0
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 9.1e-22 106.3 60 83.3
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.0e-21 105.1 60 81.7
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 2.0e-21 105.1 60 80.0
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 2.0e-21 105.1 60 80.0
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 3.5e-21 104.4 60 80.0
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.0e-20 102.8 60 78.3
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.3e-20 101.7 60 80.0
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.9e-20 101.3 60 78.3
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 3.8e-20 100.9 58 79.3
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 5.0e-20 100.5 60 80.0
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.6e-20 100.1 60 75.0
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 6.6e-20 100.1 60 78.3
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 6.6e-20 100.1 60 78.3
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 8.6e-20 99.8 60 73.3
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.1e-19 99.4 60 75.0
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 1.1e-19 99.4 60 75.0
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 1.1e-19 99.4 60 76.7
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 1.5e-19 99.0 60 75.0
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 1.5e-19 99.0 60 75.0
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.5e-19 99.0 60 73.3
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.5e-19 99.0 60 78.3
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.5e-19 99.0 60 71.7
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 1.5e-19 99.0 60 76.7
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.5e-19 99.0 60 78.3
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 1.5e-19 99.0 60 76.7
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.9e-19 98.6 60 73.3
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.9e-19 98.6 60 73.3
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.9e-19 98.6 60 73.3
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.9e-19 98.6 60 75.0
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 1.9e-19 98.6 60 73.3
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.5e-19 98.2 60 73.3
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 2.5e-19 98.2 60 76.7
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 2.5e-19 98.2 60 75.0
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 3.3e-19 97.8 60 80.0
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 3.3e-19 97.8 60 73.3
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 3.3e-19 97.8 60 75.0
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 3.3e-19 97.8 60 75.0
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 4.2e-19 97.4 60 76.7
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 4.2e-19 97.4 60 76.7
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 4.2e-19 97.4 60 73.3
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 4.2e-19 97.4 60 73.3
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 4.2e-19 97.4 60 73.3
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 5.5e-19 97.1 60 71.7
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 5.5e-19 97.1 60 73.3
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 5.5e-19 97.1 60 76.7
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 5.5e-19 97.1 60 71.7
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 5.5e-19 97.1 60 70.0
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 5.5e-19 97.1 60 76.7
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 7.2e-19 96.7 60 70.0
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 7.2e-19 96.7 60 75.0
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 7.2e-19 96.7 60 75.0
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 9.5e-19 96.3 60 75.0
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 1.2e-18 95.9 60 75.0
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.2e-18 95.9 60 75.0
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.2e-18 95.9 60 70.0
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.6e-18 95.5 60 71.7
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 2.1e-18 95.1 60 75.0
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.1e-18 95.1 60 75.0
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.1e-18 95.1 60 75.0
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 2.1e-18 95.1 60 70.0
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 2.8e-18 94.7 60 76.7
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 2.8e-18 94.7 60 68.3
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.8e-18 94.7 60 68.3
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.8e-18 94.7 60 75.0
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 3.6e-18 94.4 60 73.3
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 4.7e-18 94.0 60 71.7
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 6.1e-18 93.6 60 70.0
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 6.1e-18 93.6 60 70.0
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 6.1e-18 93.6 60 71.7
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 8.0e-18 93.2 60 73.3
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.0e-17 92.8 60 68.3
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.0e-17 92.8 60 70.0
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.0e-17 92.8 60 66.7
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 1.0e-17 92.8 60 70.0
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 1.4e-17 92.4 60 71.7
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 1.4e-17 92.4 60 71.7
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 1.8e-17 92.0 60 71.7
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.3e-17 91.7 60 66.7
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.3e-17 91.7 60 66.7
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 2.3e-17 91.7 58 70.7
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 5.2e-17 90.5 60 66.7
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 6.8e-17 90.1 61 73.8
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 8.9e-17 89.7 60 70.0
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 1.2e-16 89.4 60 68.3
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.2e-16 89.4 60 68.3
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.5e-16 89.0 63 66.7
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.5e-16 89.0 60 68.3
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.5e-16 89.0 60 70.0
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.5e-16 89.0 55 76.4
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 4.4e-16 87.4 59 67.8
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 4.4e-16 87.4 60 61.7
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 4.4e-16 87.4 60 66.7
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 5.7e-16 87.0 60 66.7
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 5.7e-16 87.0 52 76.9
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 9.8e-16 86.3 63 65.1
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 9.8e-16 86.3 60 70.0
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.8e-15 84.7 61 68.9
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.8e-15 84.7 60 68.3
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 3.7e-15 84.3 58 70.7
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 6.3e-15 83.6 64 62.5
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 8.3e-15 83.2 86 52.3
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 2.4e-14 81.6 60 61.7
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 5.4e-14 80.5 60 56.7
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 7.0e-14 80.1 52 73.1
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 5.9e-13 77.0 60 55.0
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 5.9e-13 77.0 51 72.5
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 6.6e-12 73.6 56 66.1
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 6.6e-12 73.6 56 66.1
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.2e-10 69.3 42 71.4
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.6e-10 68.9 55 60.0
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.1e-10 68.6 42 71.4
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.6e-10 67.8 56 53.6
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 6.1e-10 67.0 60 50.0
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.0e-09 66.2 56 57.1
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.0e-09 66.2 38 73.7
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 1.8e-09 65.5 56 53.6
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 5.2e-09 63.9 43 69.8
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.5e-08 62.4 60 46.7
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.0e-08 62.0 60 50.0
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.6e-08 61.6 58 60.3
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 3.7e-07 57.8 55 49.1
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 4.9e-07 57.4 60 53.3
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.1e-06 56.2 60 41.7
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 3.2e-06 54.7 60 38.3


User provided reference genes

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