Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 0.0e+00 1523.5 765 100.0
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 0.0e+00 1357.4 760 91.2
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 0.0e+00 1128.2 747 77.0
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 0.0e+00 1094.0 749 74.5
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.1e-311 1072.0 782 71.0
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 2.1e-311 1072.0 748 73.5
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.8e-308 1061.6 751 71.9
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 8.6e-297 1023.5 746 69.4
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.0e-294 1016.5 750 68.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 1.0e-294 1016.5 748 68.7
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.3e-292 1009.6 744 70.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.9e-289 998.0 760 68.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 6.6e-289 997.3 748 66.7
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.7e-284 981.5 748 66.8
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 8.3e-284 980.3 746 68.1
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 3.2e-283 978.4 746 66.9
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 2.7e-282 975.3 749 65.3
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 7.8e-282 973.8 746 66.8
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.0e-281 973.4 761 67.5
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 5.0e-281 971.1 746 66.5
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 6.6e-281 970.7 649 76.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.3e-280 968.4 745 68.5
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 2.1e-279 965.7 762 65.1
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.3e-278 962.2 762 65.1
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.3e-278 962.2 745 68.2
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 8.9e-278 960.3 746 66.0
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.2e-277 959.9 762 65.0
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.6e-277 958.7 747 66.0
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 3.4e-277 958.4 747 65.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 4.9e-276 954.5 747 66.5
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.2e-274 949.9 750 64.1
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.5e-274 948.3 761 64.4
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 3.5e-274 948.3 747 64.8
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 9.5e-272 940.3 748 65.4
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 2.6e-269 932.2 747 63.9
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.1e-267 924.1 761 63.3
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.1e-267 924.1 761 63.5
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.9e-265 918.3 786 62.6
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 3.6e-263 911.8 753 62.9
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.6e-261 905.6 748 64.7
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 3.3e-256 888.6 714 63.7
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 4.0e-254 881.7 749 62.3
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 4.2e-251 871.7 777 61.4
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 7.1e-251 870.9 839 56.6
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 3.5e-250 868.6 748 59.4
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-249 867.1 778 60.3
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 6.6e-249 864.4 846 57.4
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 8.1e-247 857.4 748 59.2
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.2e-245 853.6 760 60.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.7e-244 849.7 767 58.9
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 8.4e-244 847.4 697 61.8
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 8.4e-244 847.4 753 60.8
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.2e-242 843.6 764 57.9
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.8e-241 839.7 764 57.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 2.5e-240 835.9 744 59.3
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.3e-240 835.5 815 55.2
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 9.6e-240 833.9 762 58.0
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.3e-236 823.5 748 57.8
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.2e-234 817.0 750 58.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.9e-232 809.7 751 56.7
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 9.6e-232 807.4 763 56.4
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 2.1e-231 806.2 744 56.9
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.8e-230 803.1 697 59.8
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 7.6e-229 797.7 749 57.7
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.7e-228 796.6 745 56.9
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 3.8e-228 795.4 749 58.3
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.4e-227 793.5 747 56.5
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 3.0e-225 785.8 596 67.4
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.3e-223 780.4 784 54.8
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.5e-221 773.5 751 56.3
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 2.0e-221 773.1 752 57.2
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 7.2e-219 764.6 828 52.7
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.6e-218 762.3 747 55.6
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.4e-216 754.6 795 52.7
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 1.7e-215 753.4 713 56.8
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.1e-214 748.8 698 57.3
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 3.4e-213 745.7 771 52.7
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-211 740.7 769 51.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.9e-211 740.0 768 51.3
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 7.9e-210 734.6 772 51.3
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.1e-208 730.7 765 52.2
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 5.9e-205 718.4 702 55.6
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.3e-204 717.2 768 50.8
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 7.2e-203 711.4 768 52.5
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 9.4e-203 711.1 748 50.7
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 6.7e-201 704.9 754 50.7
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 4.4e-200 702.2 754 50.4
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 4.4e-200 702.2 768 49.7
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 2.2e-199 699.9 754 50.1
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 3.7e-199 699.1 770 49.0
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 4.8e-199 698.7 754 49.9
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 4.8e-199 698.7 745 51.0
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 8.2e-199 698.0 595 59.7
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.1e-198 697.6 754 50.9
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.8e-193 680.2 753 49.4
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.8e-193 680.2 708 55.4
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.3e-193 679.9 750 50.8
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 4.0e-193 679.1 749 52.2
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 4.4e-192 675.6 555 61.6
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.5e-187 660.6 487 69.2
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.7e-186 655.6 769 48.4
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.5e-179 634.0 745 48.5
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 9.5e-171 604.7 685 47.9
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.5e-168 597.4 745 46.6
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.3e-167 591.7 757 46.6
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.5e-160 570.9 523 57.9
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 3.0e-156 556.6 509 55.0
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 1.0e-140 505.0 642 44.7
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 2.8e-138 496.9 609 45.2
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.4e-134 483.8 747 40.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 6.0e-133 479.2 768 41.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 6.6e-132 475.7 758 41.4
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 6.2e-130 469.2 582 45.5
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.1e-125 454.1 261 87.4
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 2.3e-124 450.7 465 51.2
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.3e-106 389.4 233 86.7
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.4e-105 388.3 236 83.9
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.0e-99 367.9 438 44.5
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 1.1e-91 342.0 825 31.0
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.6e-91 340.9 823 30.3
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.6e-91 340.9 823 30.3
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.4e-91 340.1 242 71.5
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 4.4e-91 340.1 669 35.3
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 9.4e-86 322.4 192 87.0
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-85 322.0 536 40.5
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.2e-85 322.0 596 34.4
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.6e-80 305.1 188 78.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.7e-79 301.6 193 78.8
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 5.2e-76 290.0 195 71.8
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 4.1e-73 280.4 193 72.5
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.5e-67 261.9 359 40.7
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.4e-65 254.6 764 27.5
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 8.6e-63 246.1 239 55.2
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.6e-61 241.9 206 58.7
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 4.4e-59 233.8 260 52.3
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.1e-57 229.2 390 37.2
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.8e-57 228.4 207 54.1
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 5.6e-54 216.9 144 79.2
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 6.2e-53 213.4 329 38.6
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 1.7e-50 205.3 184 58.7
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 3.6e-45 187.6 143 70.6
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 3.5e-40 171.0 108 77.8
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.9e-38 165.2 164 52.4
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 6.8e-36 156.8 178 45.5
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.5e-30 139.0 84 85.7
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 5.6e-30 137.1 377 30.2
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 7.3e-30 136.7 110 62.7
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.8e-29 134.8 109 62.4
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 9.0e-28 129.8 118 60.2
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.9e-25 122.1 97 72.2
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.0e-23 114.8 100 55.0
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.1e-22 112.8 407 26.3
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 1.5e-22 112.5 114 51.8
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.5e-22 112.5 110 55.5
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 5.6e-22 110.5 86 65.1
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 1.1e-20 106.3 179 35.8
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 1.5e-19 102.4 197 31.5
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.4e-18 96.7 103 51.5
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 7.4e-14 83.6 115 37.4
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.4e-12 79.3 143 37.1
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 5.8e-11 73.9 50 68.0
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 6.0e-08 63.9 63 55.6
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 3.0e-07 61.6 76 43.4
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.1e-06 59.7 88 36.4
Cfa026921 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.6e-06 57.4 178 25.3


User provided reference genes

Program Settings