Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 9.9e-59 229.9 119 100.0
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 7.6e-35 150.6 86 93.0
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.1e-33 146.7 86 89.5
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 1.3e-29 133.3 86 79.1
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 9.0e-28 127.1 86 75.6
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.2e-27 126.7 84 76.2
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.6e-24 116.3 86 72.1
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.6e-24 116.3 86 73.3
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.7e-24 115.5 88 72.7
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 3.5e-24 115.2 86 72.1
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 7.9e-24 114.0 86 72.1
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 1.3e-23 113.2 86 72.1
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 2.3e-23 112.5 87 70.1
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 4.8e-21 104.8 87 67.8
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 3.1e-20 102.1 87 62.1
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 3.1e-20 102.1 86 64.0
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 4.1e-20 101.7 82 65.9
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.1e-20 101.7 116 53.4
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 5.3e-20 101.3 87 62.1
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 1.2e-19 100.1 87 66.7
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 1.5e-19 99.8 87 63.2
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 2.0e-19 99.4 85 62.4
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 3.4e-19 98.6 85 61.2
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 7.7e-19 97.4 85 64.7
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 7.7e-19 97.4 73 71.2
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 1.0e-18 97.1 85 62.4
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 1.7e-18 96.3 87 63.2
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 2.2e-18 95.9 87 63.2
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 2.9e-18 95.5 85 60.0
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 5.0e-18 94.7 90 58.9
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 5.0e-18 94.7 86 60.5
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 6.5e-18 94.4 84 60.7
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 8.5e-18 94.0 75 68.0
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.1e-17 93.6 83 61.4
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 4.2e-17 91.7 85 61.2
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.2e-16 90.1 74 60.8
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.6e-16 89.7 87 60.9
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.6e-16 89.7 87 60.9
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 2.7e-16 89.0 86 59.3
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.6e-16 88.6 87 56.3
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 3.6e-16 88.6 74 60.8
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 3.6e-16 88.6 85 60.0
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 4.6e-16 88.2 84 57.1
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 4.6e-16 88.2 84 57.1
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 4.6e-16 88.2 74 62.2
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 6.1e-16 87.8 88 56.8
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 6.1e-16 87.8 87 59.8
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 7.9e-16 87.4 86 55.8
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 7.9e-16 87.4 71 66.2
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 1.0e-15 87.0 87 56.3
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 1.8e-15 86.3 87 57.5
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 1.8e-15 86.3 87 57.5
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 2.3e-15 85.9 90 56.7
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 2.3e-15 85.9 86 55.8
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 2.3e-15 85.9 87 59.8
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.1e-15 84.7 82 53.7
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 5.1e-15 84.7 82 53.7
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 6.7e-15 84.3 89 55.1
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 6.7e-15 84.3 87 54.0
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 8.8e-15 84.0 85 54.1
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 8.8e-15 84.0 92 54.3
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 8.8e-15 84.0 86 54.7
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 8.8e-15 84.0 74 58.1
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 1.1e-14 83.6 85 55.3
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 1.5e-14 83.2 85 54.1
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 2.0e-14 82.8 87 56.3
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 2.5e-14 82.4 87 59.8
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.3e-14 82.0 56 78.6
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 3.3e-14 82.0 83 54.2
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 4.3e-14 81.6 86 54.7
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 4.3e-14 81.6 85 54.1
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 5.7e-14 81.3 87 51.7
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 7.4e-14 80.9 86 54.7
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 7.4e-14 80.9 87 51.7
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 9.7e-14 80.5 71 60.6
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 1.3e-13 80.1 71 60.6
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 2.2e-13 79.3 96 54.2
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 2.8e-13 79.0 88 51.1
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 3.7e-13 78.6 88 53.4
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 3.7e-13 78.6 86 57.0
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 3.7e-13 78.6 87 51.7
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.8e-13 78.2 53 77.4
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 8.2e-13 77.4 69 53.6
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 1.1e-12 77.0 88 48.9
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 1.1e-12 77.0 69 52.2
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 1.1e-12 77.0 74 54.1
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 1.1e-12 77.0 83 54.2
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.8e-12 76.3 85 50.6
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.1e-12 75.5 87 56.3
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 3.1e-12 75.5 86 47.7
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 4.1e-12 75.1 87 50.6
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 4.1e-12 75.1 85 51.8
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 5.3e-12 74.7 85 56.5
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 5.3e-12 74.7 85 51.8
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 6.9e-12 74.3 133 42.1
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 6.9e-12 74.3 84 52.4
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 9.1e-12 73.9 60 55.0
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 9.1e-12 73.9 85 56.5
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 9.1e-12 73.9 74 54.1
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 9.1e-12 73.9 87 52.9
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.2e-11 73.6 87 55.2
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 2.0e-11 72.8 59 54.2
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 3.4e-11 72.0 84 51.2
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 3.4e-11 72.0 55 60.0
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 4.5e-11 71.6 91 47.3
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 1.3e-10 70.1 86 44.2
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.3e-10 70.1 88 45.5
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 2.9e-10 68.9 87 48.3
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 3.8e-10 68.6 87 47.1
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 3.8e-10 68.6 68 51.5
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 3.8e-10 68.6 86 51.2
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 5.0e-10 68.2 88 47.7
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 6.5e-10 67.8 124 34.7
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 8.5e-10 67.4 66 59.1
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 1.1e-09 67.0 52 55.8
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 3.2e-09 65.5 72 51.4
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 4.2e-09 65.1 54 57.4
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 5.5e-09 64.7 54 55.6
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 5.5e-09 64.7 54 55.6
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 5.5e-09 64.7 101 40.6
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 1.2e-08 63.5 54 53.7
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 1.2e-08 63.5 54 53.7
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 1.2e-08 63.5 54 53.7
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 1.2e-08 63.5 54 53.7
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 1.2e-08 63.5 54 53.7
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 1.2e-08 63.5 86 50.0
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 1.6e-08 63.2 53 54.7
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 1.6e-08 63.2 52 53.8
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 2.7e-08 62.4 52 55.8
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 3.6e-08 62.0 97 46.4
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.8e-07 59.7 51 54.9
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 1.8e-07 59.7 48 68.8
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.6e-06 55.8 86 46.5
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 2.6e-06 55.8 60 45.0
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 3.3e-06 55.5 115 35.7
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.3e-06 55.5 90 40.0


User provided reference genes

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