Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 4.1e-104 381.3 186 100.0
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 3.0e-30 136.0 72 94.4
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 9.8e-29 131.0 72 90.3
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 3.5e-26 122.5 72 81.9
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 3.5e-26 122.5 72 81.9
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 5.9e-26 121.7 72 80.6
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 7.7e-26 121.3 72 84.7
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.0e-25 120.9 72 83.3
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 5.0e-25 118.6 71 81.7
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 8.6e-25 117.9 72 84.7
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 1.9e-24 116.7 71 77.5
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 4.2e-24 115.5 92 65.2
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 4.2e-24 115.5 72 76.4
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 5.5e-24 115.2 72 80.6
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 7.2e-24 114.8 72 79.2
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 9.5e-24 114.4 72 75.0
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 1.2e-23 114.0 72 75.0
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 1.2e-23 114.0 72 81.9
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 1.2e-23 114.0 72 73.6
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 1.6e-23 113.6 72 76.4
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 1.6e-23 113.6 72 81.9
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 2.1e-23 113.2 72 76.4
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 2.1e-23 113.2 72 75.0
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 2.8e-23 112.8 72 75.0
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.6e-23 112.5 72 81.9
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 3.6e-23 112.5 72 81.9
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 3.6e-23 112.5 72 81.9
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 4.7e-23 112.1 102 62.7
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 6.1e-23 111.7 71 81.7
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 6.1e-23 111.7 72 73.6
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.4e-22 110.5 72 76.4
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 1.8e-22 110.2 74 70.3
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 1.8e-22 110.2 72 73.6
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 2.3e-22 109.8 72 72.2
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 2.3e-22 109.8 72 72.2
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 3.0e-22 109.4 72 69.4
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 3.0e-22 109.4 72 69.4
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 4.0e-22 109.0 72 73.6
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 4.0e-22 109.0 66 81.8
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 6.8e-22 108.2 72 75.0
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 8.9e-22 107.8 72 76.4
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 1.5e-21 107.1 72 70.8
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 1.5e-21 107.1 77 66.2
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 2.0e-21 106.7 72 73.6
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 2.0e-21 106.7 72 73.6
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 2.6e-21 106.3 72 79.2
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 3.4e-21 105.9 72 75.0
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 3.4e-21 105.9 71 77.5
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 3.4e-21 105.9 75 72.0
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 3.4e-21 105.9 72 72.2
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 4.4e-21 105.5 72 69.4
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 4.4e-21 105.5 72 73.6
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 5.7e-21 105.1 92 57.6
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 5.7e-21 105.1 72 68.1
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 9.8e-21 104.4 74 68.9
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 9.8e-21 104.4 71 73.2
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 9.8e-21 104.4 72 66.7
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 1.7e-20 103.6 72 68.1
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 2.2e-20 103.2 72 70.8
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 2.2e-20 103.2 72 66.7
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 3.7e-20 102.4 71 71.8
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 6.3e-20 101.7 72 69.4
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 6.3e-20 101.7 71 73.2
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 6.3e-20 101.7 72 69.4
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 6.3e-20 101.7 72 69.4
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 8.3e-20 101.3 71 77.5
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 8.3e-20 101.3 68 72.1
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 2.4e-19 99.8 71 71.8
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 2.4e-19 99.8 72 73.6
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 3.1e-19 99.4 72 70.8
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 3.1e-19 99.4 71 69.0
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 5.4e-19 98.6 72 68.1
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 5.4e-19 98.6 77 62.3
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 9.2e-19 97.8 72 68.1
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 1.2e-18 97.4 71 70.4
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 1.2e-18 97.4 73 68.5
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 1.6e-18 97.1 71 70.4
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 4.5e-18 95.5 72 66.7
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 1.0e-17 94.4 72 69.4
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 1.7e-17 93.6 72 65.3
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 2.3e-17 93.2 71 63.4
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 2.3e-17 93.2 72 66.7
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 2.9e-17 92.8 72 65.3
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 3.9e-17 92.4 72 65.3
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 6.6e-17 91.7 73 68.5
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 1.1e-16 90.9 72 59.7
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 1.5e-16 90.5 77 54.5
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 1.9e-16 90.1 71 62.0
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 1.9e-16 90.1 72 68.1
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 3.3e-16 89.4 77 53.2
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 4.3e-16 89.0 72 62.5
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 4.3e-16 89.0 72 62.5
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 5.6e-16 88.6 71 60.6
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 5.6e-16 88.6 53 79.2
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 9.5e-16 87.8 72 59.7
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.1e-15 86.7 71 59.2
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.1e-15 86.7 71 59.2
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 2.1e-15 86.7 71 57.7
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 2.8e-15 86.3 71 60.6
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 6.1e-15 85.1 66 63.6
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 6.1e-15 85.1 56 69.6
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 6.1e-15 85.1 72 58.3
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 8.0e-15 84.7 71 56.3
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 8.0e-15 84.7 73 63.0
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 1.0e-14 84.3 72 59.7
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 1.4e-14 84.0 72 58.3
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.3e-14 83.2 71 59.2
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.3e-14 83.2 71 59.2
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 2.3e-14 83.2 71 59.2
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 5.2e-14 82.0 72 58.3
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 6.8e-14 81.6 70 55.7
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 6.8e-14 81.6 72 58.3
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 1.2e-13 80.9 72 56.9
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 1.5e-13 80.5 75 56.0
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 2.0e-13 80.1 76 53.9
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 2.6e-13 79.7 75 56.0
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 3.4e-13 79.3 72 54.2
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 3.4e-13 79.3 72 54.2
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 3.4e-13 79.3 75 57.3
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 4.4e-13 79.0 63 66.7
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 4.4e-13 79.0 75 56.0
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 4.4e-13 79.0 75 54.7
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 4.4e-13 79.0 75 54.7
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 4.4e-13 79.0 75 56.0
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 4.4e-13 79.0 71 56.3
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 5.8e-13 78.6 75 56.0
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 5.8e-13 78.6 71 52.1
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 7.5e-13 78.2 72 52.8
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 7.5e-13 78.2 75 56.0
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 7.5e-13 78.2 75 54.7
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 7.5e-13 78.2 75 56.0
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 7.5e-13 78.2 75 56.0
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 7.5e-13 78.2 72 52.8
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 7.5e-13 78.2 72 58.3
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.7e-12 77.0 72 55.6
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 2.9e-12 76.3 71 54.9
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 8.3e-12 74.7 72 56.9
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.4e-11 73.2 53 71.7
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 3.2e-11 72.8 54 66.7
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 3.2e-11 72.8 116 40.5
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.7e-10 69.7 78 46.2
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 1.7e-09 67.0 73 45.2
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 1.7e-09 67.0 78 39.7
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 2.3e-09 66.6 72 51.4
Actinidia16726 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.0e-09 66.2 45 73.3
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 1.5e-08 63.9 94 42.6
Dinv03783 Davidia involucrata HOM05D010100 ORTHO05D006370 5.6e-08 62.0 60 53.3
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.6e-07 60.5 72 48.6
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 2.1e-07 60.1 76 44.7
Dinv13643 Davidia involucrata HOM05D010100 ORTHO05D006370 1.8e-06 57.0 35 74.3


User provided reference genes

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