Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05246 Davidia involucrata HOM05D000001 ORTHO05D004986 5.3e-125 451.1 231 100.0
Dinv32284 Davidia involucrata HOM05D000001 ORTHO05D009595 4.2e-114 414.8 234 91.0
vmacro17922 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 4.8e-102 374.8 232 84.5
vmacro13003 Vaccinium macrocarpon HOM05D000001 ORTHO05D004986 2.0e-100 369.4 232 83.2
QL08p032320 Quercus lobata HOM05D000001 ORTHO05D004986 3.5e-100 368.6 233 79.0
GSVIVG01021402001 Vitis vinifera HOM05D000001 ORTHO05D004986 1.3e-99 366.7 234 79.9
Hma1.2p1_0835F.1_g225806 Hydrangea macrophylla HOM05D000001 ORTHO05D004986 2.3e-96 355.9 222 84.2
Rhsim01G0128700 Rhododendron simsii HOM05D000001 ORTHO05D004986 1.5e-95 353.2 253 74.3
Cfa000981 Carpinus fangiana HOM05D000001 ORTHO05D004986 2.6e-95 352.4 235 77.0
QL12p004541 Quercus lobata HOM05D000001 ORTHO05D004986 1.7e-94 349.7 233 77.7
TPR.G8082 Trifolium pratense HOM05D000001 ORTHO05D004986 4.5e-92 341.7 234 75.2
TAR624G0170 Trochodendron aralioides HOM05D000001 ORTHO05D004986 4.5e-92 341.7 224 79.0
Haze_05536 Corylus avellana HOM05D000001 ORTHO05D004986 1.0e-91 340.5 257 70.4
TWI75G1193 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.2e-91 339.3 234 75.2
Gohir.D10G039700 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.9e-91 339.0 234 76.9
Gorai.011G041800 Gossypium raimondii HOM05D000001 ORTHO05D004986 3.8e-91 338.6 234 76.9
Atru.chr10.1353 Acer truncatum HOM05D000001 ORTHO05D004986 5.0e-91 338.2 209 80.9
Gohir.A09G078100 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.0e-91 338.2 235 75.7
TAR626G1778 Trochodendron aralioides HOM05D000001 ORTHO05D004986 5.0e-91 338.2 224 77.2
Lj2g0023818 Lotus japonicus HOM05D000001 ORTHO05D004986 1.1e-90 337.0 234 75.6
Duzib235G0686 Durio zibethinus HOM05D000001 ORTHO05D004986 2.5e-90 335.9 234 74.8
Gohir.A10G038800 Gossypium hirsutum HOM05D000001 ORTHO05D004986 2.5e-90 335.9 234 76.9
Lalb_Chr22g0354111 Lupinus albus HOM05D000001 ORTHO05D004986 2.5e-90 335.9 235 73.2
TWI09G1546 Tripterygium wilfordii HOM05D000001 ORTHO05D004986 2.5e-90 335.9 234 74.8
CiPaw.10G094900 Carya illinoinensis HOM05D000001 ORTHO05D004986 3.2e-90 335.5 219 78.5
Gohir.D09G078500 Gossypium hirsutum HOM05D000001 ORTHO05D004986 5.5e-90 334.7 235 75.3
Gorai.006G093500 Gossypium raimondii HOM05D000001 ORTHO05D004986 5.5e-90 334.7 235 74.9
AT4G18230 Arabidopsis thaliana HOM05D000001 ORTHO05D004986 1.6e-89 333.2 234 73.9
CsaV3_3G001520 Cucumis sativus L. HOM05D000001 ORTHO05D004986 1.6e-89 333.2 221 77.4
Carub.0004s0792 Capsella rubella HOM05D000001 ORTHO05D004986 2.1e-89 332.8 234 72.2
COL.COLO4_07499 Corchorus olitorius HOM05D000001 ORTHO05D004986 2.7e-89 332.4 219 78.5
CARHR224980 Cardamine hirsuta HOM05D000001 ORTHO05D004986 8.0e-89 330.9 235 73.6
AL7G36180 Arabidopsis lyrata HOM05D000001 ORTHO05D004986 1.0e-88 330.5 234 73.1
Manes.17G066600 Manihot esculenta HOM05D000001 ORTHO05D004986 1.0e-88 330.5 232 72.8
PSO210G2371 Papaver somniferum HOM05D000001 ORTHO05D004986 1.8e-88 329.7 236 72.5
CAN.G638.28 Capsicum annuum HOM05D000001 ORTHO05D004986 2.3e-88 329.3 234 73.1
PSO675G0445 Papaver somniferum HOM05D000001 ORTHO05D004986 2.3e-88 329.3 236 72.0
Solyc03g005800.4 Solanum lycopersicum HOM05D000001 ORTHO05D004986 2.3e-88 329.3 234 73.5
Carub.0007s2310 Capsella rubella HOM05D000001 ORTHO05D004986 3.0e-88 328.9 234 71.8
THA.LOC104807170 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 3.0e-88 328.9 231 71.9
Ciclev10016572m.g Citrus clementina HOM05D000001 ORTHO05D004986 4.0e-88 328.6 233 73.4
DCAR_003945 Daucus carota HOM05D000001 ORTHO05D004986 5.2e-88 328.2 219 76.3
Sed0013949 Sechium edule HOM05D000001 ORTHO05D004986 6.8e-88 327.8 221 76.9
Sopen03g001840 Solanum pennellii HOM05D000001 ORTHO05D004986 6.8e-88 327.8 234 73.1
Aqoxy3G02543 Aquilegia oxysepala HOM05D000001 ORTHO05D004986 8.8e-88 327.4 228 74.6
Cpa.g.sc116.50 Carica papaya HOM05D000001 ORTHO05D004986 8.8e-88 327.4 234 73.1
Glyma.09G206400 Glycine max HOM05D000001 ORTHO05D004986 1.5e-87 326.6 234 73.5
PSO541G0137 Papaver somniferum HOM05D000001 ORTHO05D004986 2.6e-87 325.9 236 72.5
Sp7g15880 Schrenkiella parvula HOM05D000001 ORTHO05D004986 2.6e-87 325.9 229 74.2
TPR.G37137 Trifolium pratense HOM05D000001 ORTHO05D004986 2.6e-87 325.9 234 73.1
THA.LOC104812842 Tarenaya hassleriana HOM05D000001 ORTHO05D004986 4.4e-87 325.1 230 70.9
PGSC0003DMG400013419 Solanum tuberosum HOM05D000001 ORTHO05D004986 5.7e-87 324.7 221 76.5
Glyma.06G034800 Glycine max HOM05D000001 ORTHO05D004986 7.5e-87 324.3 234 72.6
Medtr2g103770 Medicago truncatula HOM05D000001 ORTHO05D004986 7.5e-87 324.3 234 72.2
Nitab4.5_0020993g0010 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.5e-87 324.3 225 75.1
VMungo1215G3010 Vigna mungo HOM05D000001 ORTHO05D004986 7.5e-87 324.3 234 73.5
A03p51120 Brassica napus HOM05D000001 ORTHO05D004986 9.8e-87 323.9 229 73.8
Oeu040958.1 Olea europaea HOM05D000001 ORTHO05D004986 1.3e-86 323.6 224 74.1
Phvul.002G139300 Phaseolus vulgaris HOM05D000001 ORTHO05D004986 1.3e-86 323.6 234 72.2
Thhalv10026141m.g Eutrema salsugineum HOM05D000001 ORTHO05D004986 2.2e-86 322.8 229 73.8
Glyma.01G016400 Glycine max HOM05D000001 ORTHO05D004986 2.2e-86 322.8 234 72.2
Oeu052385.1 Olea europaea HOM05D000001 ORTHO05D004986 2.2e-86 322.8 216 74.1
HanXRQChr09g0248611 Helianthus annuus HOM05D000001 ORTHO05D004986 2.8e-86 322.4 216 75.9
Migut.M00942 Erythranthe guttata HOM05D000001 ORTHO05D004986 3.7e-86 322.0 220 76.8
Aa31LG6G920 Aethionema arabicum HOM05D000001 ORTHO05D004986 8.3e-86 320.9 233 71.7
SalBow8G4638 Salvia bowleyana HOM05D000001 ORTHO05D004986 8.3e-86 320.9 235 72.3
SalBow8G5585 Salvia bowleyana HOM05D000001 ORTHO05D004986 1.1e-85 320.5 235 71.9
FAN16G0100 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.4e-85 320.1 228 71.9
FvH4_3g06150 Fragaria vesca HOM05D000001 ORTHO05D004986 1.8e-85 319.7 228 71.5
FAN21G2879 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-85 319.7 228 71.9
RcHm_v2.0_Chr5g0013201 Rosa chinensis HOM05D000001 ORTHO05D004986 1.8e-85 319.7 221 74.2
BraA01t00965Z Brassica rapa HOM05D000001 ORTHO05D004986 2.4e-85 319.3 231 72.3
BraA03t14197Z Brassica rapa HOM05D000001 ORTHO05D004986 2.4e-85 319.3 229 73.4
MSTRG.16212 Avicennia marina HOM05D000001 ORTHO05D004986 3.1e-85 318.9 235 70.6
EL10Ac7g17433 Beta vulgaris HOM05D000001 ORTHO05D004986 3.1e-85 318.9 212 75.0
BolC1t01175H Brassica oleracea HOM05D000001 ORTHO05D004986 3.1e-85 318.9 229 72.9
FAN11G3616 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.4e-85 318.2 211 74.9
Nitab4.5_0002814g0060 Nicotiana tabacum HOM05D000001 ORTHO05D004986 7.0e-85 317.8 231 70.6
Potri.001G352000 Populus trichocarpa HOM05D000001 ORTHO05D004986 7.0e-85 317.8 232 70.7
Ah.14g088450 Amaranthus hybridus HOM05D000001 ORTHO05D004986 9.1e-85 317.4 222 73.4
BcaNung00022 Brassica carinata HOM05D000001 ORTHO05D004986 9.1e-85 317.4 207 77.8
Eucgr.E02385 Eucalyptus grandis HOM05D000001 ORTHO05D004986 9.1e-85 317.4 217 75.1
PSO210G1957 Papaver somniferum HOM05D000001 ORTHO05D004986 9.1e-85 317.4 236 70.3
SGA_v2.0_scaffold333G49009 Striga asiatica HOM05D000001 ORTHO05D004986 9.1e-85 317.4 215 75.3
Duzib192G0828 Durio zibethinus HOM05D000001 ORTHO05D004986 2.7e-84 315.8 291 61.5
Cc06_g17960 Coffea canephora HOM05D000001 ORTHO05D004986 7.7e-84 314.3 235 71.5
MD05G1289800 Malus domestica HOM05D000001 ORTHO05D004986 2.3e-83 312.8 218 73.9
Prupe.4G075900 Prunus persica HOM05D000001 ORTHO05D004986 2.9e-83 312.4 222 72.5
MD10G1265600 Malus domestica HOM05D000001 ORTHO05D004986 3.8e-83 312.0 224 72.3
A01p10190 Brassica napus HOM05D000001 ORTHO05D004986 5.0e-83 311.6 201 78.6
DCAR_007902 Daucus carota HOM05D000001 ORTHO05D004986 5.0e-83 311.6 209 77.5
HanXRQChr11g0348471 Helianthus annuus HOM05D000001 ORTHO05D004986 5.0e-83 311.6 213 74.6
PGR042G2866 Punica granatum HOM05D000001 ORTHO05D004986 5.0e-83 311.6 213 74.2
Lsat_1_v5_gn_0_21141 Lactuca sativa HOM05D002527 ORTHO05D004986 6.5e-83 311.2 217 72.4
BcaC09g51544 Brassica carinata HOM05D000001 ORTHO05D004986 1.1e-82 310.5 229 71.2
C01p12010 Brassica napus HOM05D000001 ORTHO05D004986 1.1e-82 310.5 229 71.2
Lj1A1183G70 Lonicera japonica HOM05D000001 ORTHO05D004986 1.1e-82 310.5 225 73.8
Peaxi162Scf00778g00312 Petunia axillaris HOM05D000001 ORTHO05D004986 2.5e-82 309.3 263 65.8
Sabra16G0231400 Salix brachista HOM05D000001 ORTHO05D004986 5.5e-82 308.1 219 72.1
BolC7t45459H Brassica oleracea HOM05D000001 ORTHO05D004986 9.5e-82 307.4 229 70.3
BcaNung05675 Brassica carinata HOM05D000001 ORTHO05D004986 1.2e-81 307.0 218 72.9
C07p49550 Brassica napus HOM05D000001 ORTHO05D004986 1.6e-81 306.6 217 72.8
PSO782G3580 Papaver somniferum HOM05D000001 ORTHO05D004986 2.8e-81 305.8 242 67.8
CDE04G3124 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 4.7e-81 305.1 213 74.6
FAN12G3749 Fragaria x ananassa HOM05D000001 ORTHO05D004986 1.8e-80 303.1 227 69.6
unitig_32.g11435 Utricularia gibba HOM05D000001 ORTHO05D004986 2.3e-80 302.8 232 69.8
ECA232G3011 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.0e-80 302.4 210 71.9
FAN12G0199 Fragaria x ananassa HOM05D000001 ORTHO05D004986 5.2e-80 301.6 227 69.6
EL10Ac8g19918 Beta vulgaris HOM05D000001 ORTHO05D004986 8.9e-80 300.8 207 71.5
Thecc.06G155100 Theobroma cacao HOM05D000001 ORTHO05D004986 2.0e-79 299.7 234 68.8
HPP92_001019 Vanilla planifolia HOM05D000001 ORTHO05D004986 1.3e-78 297.0 223 65.9
Actinidia19506 Actinidia chinensis HOM05D000001 ORTHO05D004986 1.4e-77 293.5 167 89.2
arahy.Tifrunner.gnm1.ann1.RU8LWF Arachis hypogaea HOM05D000001 ORTHO05D004986 1.8e-77 293.1 234 66.2
arahy.Tifrunner.gnm1.ann1.KEGW9P Arachis hypogaea HOM05D000001 ORTHO05D004986 2.4e-77 292.7 234 66.2
ATR0598G080 Amborella trichopoda HOM05D000001 ORTHO05D004986 5.9e-76 288.1 217 66.8
Lj2g0013388 Lotus japonicus HOM05D000001 ORTHO05D004986 1.0e-75 287.3 256 62.1
Ca_08155_v3 Cicer arietinum L. HOM05D000001 ORTHO05D004986 8.6e-75 284.3 234 66.2
Hund08913 Selenicereus undatus HOM05D000001 ORTHO05D004986 1.9e-74 283.1 317 52.1
Nitab4.5_0000982g0180 Nicotiana tabacum HOM05D000001 ORTHO05D004986 5.6e-74 281.6 231 63.2
Zm00001eb138940 Zea mays HOM05D000001 ORTHO05D004986 2.0e-71 273.1 214 61.7
Lalb_Chr22g0354091 Lupinus albus HOM05D000001 ORTHO05D004986 2.9e-70 269.2 170 80.0
Sc05g0008440 Simmondsia chinensis HOM05D000001 ORTHO05D004986 1.2e-68 263.8 231 64.1
FAN25G0129 Fragaria x ananassa HOM05D000001 ORTHO05D004986 6.0e-68 261.5 160 80.0
Hund23532 Selenicereus undatus HOM05D000001 ORTHO05D004986 6.0e-68 261.5 231 63.2
Zm00001eb405440 Zea mays HOM05D000001 ORTHO05D004986 3.9e-67 258.8 200 62.5
Peaxi162Scf00242g00511 Petunia axillaris HOM05D000001 ORTHO05D004986 3.4e-63 245.7 216 62.0
Atru.chr10.1362 Acer truncatum HOM05D000001 ORTHO05D004986 4.4e-63 245.4 207 64.3
Eucgr.G01712 Eucalyptus grandis HOM05D000001 ORTHO05D004986 1.6e-57 226.9 169 68.0
AagrBONN_evm.TU.Sc2ySwM_344.5328 Anthoceros agrestis HOM05D000001 ORTHO05D004986 3.6e-57 225.7 224 54.0
FAN07G0177 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.8e-56 223.4 211 59.7
AUR62012587 Chenopodium quinoa HOM05D000001 ORTHO05D004986 3.1e-56 222.6 160 68.1
Pp3c16_16970 Physcomitrium patens HOM05D000001 ORTHO05D004986 6.8e-56 221.5 228 51.8
ClCG10G001450 Citrullus lanatus HOM05D000001 ORTHO05D004986 2.6e-55 219.5 122 88.5
CAN.G157.25 Capsicum annuum HOM05D000001 ORTHO05D004986 7.5e-55 218.0 175 67.4
Mapoly0083s0035 Marchantia polymorpha HOM05D000001 ORTHO05D004986 1.7e-54 216.9 207 52.7
SMO111G0079 Selaginella moellendorffii HOM05D000001 ORTHO05D004986 8.3e-54 214.5 173 58.4
Psat2g137640 Pisum sativum HOM05D000001 ORTHO05D004986 1.1e-53 214.2 121 87.6
Nitab4.5_0004171g0030 Nicotiana tabacum HOM05D000001 ORTHO05D004986 2.4e-53 213.0 116 86.2
PSO675G6216 Papaver somniferum HOM05D000001 ORTHO05D004986 2.4e-53 213.0 146 77.4
FvH4_4g17080 Fragaria vesca HOM05D000001 ORTHO05D004986 2.1e-52 209.9 163 66.9
CBR_g20308 Chara braunii HOM05D000001 ORTHO05D004986 8.6e-51 204.5 245 44.5
Nn6g33671 Nelumbo nucifera HOM05D000001 ORTHO05D004986 2.4e-48 196.4 157 66.9
SEGI_41604 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 1.2e-47 194.1 120 75.8
Cre16.g669950 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 8.4e-46 188.0 220 49.5
BcaNung05673 Brassica carinata HOM05D000001 ORTHO05D004986 1.4e-45 187.2 104 84.6
MELO3C013839.2 Cucumis melo HOM05D000001 ORTHO05D004986 4.6e-44 182.2 299 40.8
SGA_v2.0_scaffold44G16546 Striga asiatica HOM05D000001 ORTHO05D004986 1.1e-42 177.6 214 50.0
Potri.002G170700 Populus trichocarpa HOM05D000001 ORTHO05D004986 5.4e-37 158.7 188 52.1
FAN22G1785 Fragaria x ananassa HOM05D000001 ORTHO05D009595 1.0e-35 154.5 175 53.1
MCO07G420 Micromonas commoda HOM05D000001 ORTHO05D004986 2.5e-34 149.8 186 44.6
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.9e-29 133.7 81 80.2
FAN17G2209 Fragaria x ananassa HOM05D000001 ORTHO05D004986 7.1e-29 131.7 117 61.5
CDE04G2877 Ceratophyllum demersum HOM05D000001 ORTHO05D004986 8.7e-27 124.8 156 50.6
Atru.chr10.1359 Acer truncatum HOM05D000001 ORTHO05D004986 1.9e-26 123.6 82 78.0
Glyma.01G062700 Glycine max HOM05D000001 ORTHO05D004986 1.3e-25 120.9 103 62.1
MD05G1092100 Malus domestica HOM05D000001 ORTHO05D004986 8.1e-25 118.2 74 78.4
Glyma.17G172800 Glycine max HOM05D000001 ORTHO05D004986 4.0e-24 115.9 103 60.2
MD10G1065300 Malus domestica HOM05D000001 ORTHO05D004986 2.9e-22 109.8 164 42.1
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 2.9e-22 109.8 62 77.4
ClCG10G001440 Citrullus lanatus HOM05D000001 ORTHO05D004986 5.5e-21 105.5 152 44.1
arahy.Tifrunner.gnm1.ann1.T5CDEI Arachis hypogaea HOM05D000001 ORTHO05D005257 1.6e-20 104.0 173 38.2
CAN.G45.3 Capsicum annuum HOM05D000001 ORTHO05D004986 1.6e-20 104.0 67 79.1
A08p13600 Brassica napus HOM05D000001 ORTHO05D004986 3.5e-20 102.8 81 64.2
Ciclev10013445m.g Citrus clementina HOM05D000001 ORTHO05D004986 7.9e-20 101.7 72 70.8
Os03g0423200 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D004986 1.1e-18 97.8 59 79.7
Glyma.08G299100 Glycine max HOM05D000001 ORTHO05D002756 3.3e-18 96.3 178 39.3
Cfa022018 Carpinus fangiana HOM05D000001 ORTHO05D004986 6.2e-17 92.0 250 30.8
arahy.Tifrunner.gnm1.ann1.WQ0UR5 Arachis hypogaea HOM05D000001 ORTHO05D083426 1.5e-15 87.4 137 39.4
Medtr5g029710 Medicago truncatula HOM05D000001 ORTHO05D004986 4.5e-15 85.9 78 55.1
arahy.Tifrunner.gnm1.ann1.9TS7X7 Arachis hypogaea HOM05D000025 ORTHO05D000040 3.0e-11 73.2 46 76.1
SEGI_40748 Sequoiadendron giganteum HOM05D000001 ORTHO05D004986 5.1e-11 72.4 92 45.7
arahy.Tifrunner.gnm1.ann1.A1RXRR Arachis hypogaea HOM05D000001 ORTHO05D004986 2.2e-09 67.0 45 68.9
QL05p059782 Quercus lobata HOM05D000003 ORTHO05D000006 3.1e-08 63.2 49 65.3
BolC8t48554H Brassica oleracea HOM05D000001 ORTHO05D004986 4.1e-08 62.8 52 61.5
Lalb_Chr22g0354081 Lupinus albus HOM05D000001 ORTHO05D048480 7.7e-07 58.5 60 48.3
Nitab4.5_0000001g0510 Nicotiana tabacum HOM05D000001 ORTHO05D004986 1.0e-06 58.2 34 70.6
Cre16.g667701 Chlamydomonas reinhardtii HOM05D000001 ORTHO05D004986 5.0e-06 55.8 44 70.5
arahy.Tifrunner.gnm1.ann1.X21LXD Arachis hypogaea HOM05D000001 ORTHO05D085495 6.5e-06 55.5 124 36.3


User provided reference genes

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