Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1960.3 967 100.0
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1692.6 967 85.9
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1478.4 943 77.6
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1435.6 945 76.2
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1419.4 949 74.9
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1417.1 942 74.4
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1411.4 975 72.2
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1394.0 950 73.1
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1393.3 937 74.9
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1372.8 987 70.5
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1355.9 985 70.5
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1354.3 940 72.4
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1349.3 941 71.4
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1339.7 939 71.7
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1323.1 993 68.0
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1320.8 945 69.8
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1312.7 936 70.3
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1297.3 933 70.5
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1293.9 973 67.7
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1292.3 983 66.9
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1291.6 951 70.6
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1287.7 1046 64.9
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1283.5 943 69.2
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1283.1 938 69.9
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1278.8 945 68.8
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1276.9 951 68.6
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1276.5 926 69.1
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1273.8 943 68.6
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1271.1 941 67.9
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1269.2 933 68.9
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1269.2 943 67.1
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1268.8 989 66.6
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1266.5 955 67.7
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1263.4 974 66.7
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1263.1 943 66.7
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1260.7 947 68.1
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1255.7 935 67.7
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1255.4 999 65.5
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1253.0 946 68.4
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1251.5 963 67.5
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1249.2 945 68.4
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1248.8 936 68.6
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1247.6 939 67.1
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1246.9 943 67.1
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1243.8 946 67.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1243.0 936 68.1
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1231.1 1005 63.3
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1229.2 975 64.2
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1228.8 1026 62.7
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1225.3 947 65.7
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1223.8 951 66.0
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1220.3 1005 62.5
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1219.9 978 64.2
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1219.5 1057 60.8
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1219.1 945 65.6
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1218.4 1007 63.1
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1218.0 951 66.1
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1217.2 1005 62.5
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1215.3 964 64.2
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1214.5 1005 62.3
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1214.1 926 67.0
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1213.4 948 65.8
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1201.8 931 66.6
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1201.8 1015 63.3
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1195.3 954 64.9
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1194.1 934 64.6
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1190.3 987 62.9
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1183.3 947 63.6
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1182.5 928 64.4
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1181.8 955 64.4
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1176.8 941 65.0
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1175.2 947 63.8
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1175.2 968 62.7
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1173.7 947 63.7
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1172.9 947 63.4
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1168.7 948 63.1
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1168.7 950 62.8
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1167.5 959 62.7
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1166.4 948 62.9
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1166.0 956 62.0
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1165.2 945 63.3
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1164.4 946 63.3
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1164.1 824 71.1
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1164.1 953 61.9
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1164.1 1071 58.7
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 949 62.8
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 948 62.8
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 948 62.8
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 0.0e+00 1162.1 871 67.6
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1161.4 946 62.7
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1158.3 887 66.7
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1153.7 986 60.5
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1150.6 975 60.5
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1147.1 943 62.4
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1147.1 943 62.4
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 937 61.7
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1122.5 964 60.3
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 0.0e+00 1114.0 860 67.1
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 925 62.6
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 0.0e+00 1110.1 938 61.0
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1102.4 918 62.2
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1099.3 916 61.7
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 0.0e+00 1097.4 867 65.1
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 965 59.6
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 0.0e+00 1085.1 993 58.4
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 4.0e-307 1058.1 1209 50.8
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.0e-303 1045.8 974 56.7
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 7.7e-303 1043.9 1061 54.1
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.3e-302 1043.1 824 64.8
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.3e-302 1042.3 976 56.6
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 3.1e-296 1021.9 973 55.4
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 8.3e-273 944.1 802 61.8
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.1e-272 943.7 931 54.7
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 3.6e-268 928.7 959 53.5
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.9e-262 908.7 696 67.5
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 6.9e-259 897.9 771 60.2
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 3.2e-256 889.0 996 48.5
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 6.9e-251 871.3 721 63.1
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 1.9e-248 863.2 881 51.2
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 9.3e-248 860.9 859 52.9
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.6e-242 842.8 1079 44.6
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 2.6e-226 789.6 758 58.2
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.6e-213 746.5 649 61.0
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.8e-206 723.8 642 60.7
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 9.7e-197 691.4 411 81.8
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.9e-193 679.9 675 56.4
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 8.0e-175 618.6 713 51.5
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.2e-172 610.5 424 73.6
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.4e-171 607.1 378 79.4
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 7.0e-171 605.5 629 55.5
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 5.6e-168 595.9 405 74.6
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-156 558.1 479 62.8
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.1e-134 485.3 289 79.6
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.5e-128 464.9 298 73.8
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.5e-128 464.9 573 48.0
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.8e-126 458.0 300 73.7
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.8e-125 453.0 484 52.5
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.5e-117 426.8 317 64.7
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 3.1e-102 377.5 326 58.0
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 3.3e-96 357.5 240 73.8
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.4e-62 245.0 279 51.6
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.2e-58 232.6 139 80.6
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 8.9e-57 226.5 157 70.1
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.1e-54 217.6 210 52.4
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 4.0e-49 201.1 132 75.0
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 2.2e-47 195.3 133 71.4
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.7e-39 169.1 168 54.2
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 2.9e-31 141.7 115 61.7
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 4.2e-30 137.9 116 61.2
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-29 136.3 76 84.2
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 7.3e-27 127.1 86 66.3
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 9.6e-19 100.1 66 69.7
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.3e-18 99.8 160 38.1
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.1e-17 96.7 283 31.4
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.9e-14 85.9 78 57.7
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.4e-14 85.5 89 53.9
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 7.1e-14 84.0 52 69.2
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 3.3e-11 75.1 75 50.7
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.8e-10 72.0 94 38.3
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.4e-09 69.7 51 64.7
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.1e-09 68.6 62 54.8
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.9e-09 67.4 70 50.0
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 2.0e-08 65.9 146 32.9
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 1.3e-07 63.2 53 56.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 1.3e-07 63.2 53 56.6
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 1.7e-07 62.8 53 56.6
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 2.9e-07 62.0 52 59.6
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 3.2e-06 58.5 33 72.7
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 9.3e-06 57.0 139 33.8


User provided reference genes

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