Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 2.6e-214 748.4 376 100.0
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 1.7e-117 426.8 297 73.1
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 9.3e-111 404.4 295 70.8
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 3.9e-109 399.1 295 69.5
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 1.9e-103 380.2 289 67.8
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 3.2e-103 379.4 290 67.9
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.1e-100 370.9 300 64.0
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 6.2e-99 365.2 257 73.9
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 8.1e-99 364.8 290 64.5
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.8e-98 363.6 257 73.5
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 3.1e-98 362.8 295 64.4
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.2e-97 360.9 293 63.1
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 3.4e-97 359.4 290 61.7
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.4e-97 359.4 330 59.7
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 4.2e-95 352.4 285 63.5
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 5.5e-95 352.1 280 63.2
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 9.3e-95 351.3 315 60.3
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.5e-94 349.4 294 64.3
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 7.9e-94 348.2 267 65.5
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.3e-93 347.4 284 61.3
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 3.9e-93 345.9 275 65.8
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 5.1e-93 345.5 303 60.4
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 1.1e-92 344.4 286 62.9
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 9.6e-92 341.3 286 61.9
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.3e-91 340.9 287 61.7
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.8e-91 339.0 280 60.7
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 4.8e-91 339.0 285 62.5
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.4e-90 337.4 288 60.1
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 3.1e-90 336.3 284 60.9
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 5.8e-89 332.0 297 58.6
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 3.2e-87 326.2 281 59.8
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 5.5e-87 325.5 280 58.9
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 2.1e-86 323.6 284 60.2
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.5e-84 317.4 307 55.4
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 1.9e-84 317.0 295 57.3
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 4.8e-83 312.4 231 67.5
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 4.8e-83 312.4 288 58.7
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.4e-82 310.8 282 58.9
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 5.3e-82 308.9 284 59.5
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.2e-81 307.8 283 58.7
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.0e-81 307.0 307 54.4
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 3.4e-81 306.2 286 55.9
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 4.5e-81 305.8 240 66.2
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 4.5e-81 305.8 306 54.6
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.0e-80 304.7 297 55.9
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.7e-80 303.9 403 46.2
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 2.9e-80 303.1 285 58.2
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.9e-80 303.1 298 55.4
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 4.2e-79 299.3 289 55.4
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.6e-78 297.4 280 56.1
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 4.6e-78 295.8 300 54.7
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 4.6e-78 295.8 287 53.3
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 6.1e-78 295.4 283 56.9
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.5e-76 290.0 275 55.3
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 2.5e-76 290.0 266 57.9
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 4.3e-76 289.3 291 50.9
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.3e-75 287.7 281 53.4
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.6e-75 287.3 277 55.6
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 6.3e-75 285.4 291 53.6
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 2.4e-74 283.5 282 49.6
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 4.1e-74 282.7 305 47.5
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 6.9e-74 282.0 281 49.8
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 9.0e-74 281.6 306 51.6
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 9.0e-74 281.6 295 54.9
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 4.5e-73 279.3 263 56.3
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.7e-72 277.3 306 51.3
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.7e-72 277.3 352 48.6
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 2.2e-72 276.9 278 53.6
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 2.9e-72 276.6 299 52.8
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 6.5e-72 275.4 258 57.0
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 3.2e-71 273.1 309 48.9
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 7.2e-71 271.9 279 49.1
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.1e-70 270.4 281 48.4
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.7e-70 270.0 281 53.4
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.6e-70 269.2 251 56.2
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.0e-69 268.1 251 55.8
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 5.1e-69 265.8 281 49.1
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.1e-68 264.6 280 52.1
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.5e-68 263.5 195 65.1
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 8.2e-67 258.5 281 48.0
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.1e-66 258.1 293 47.4
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.1e-66 258.1 292 46.9
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.8e-66 257.3 237 57.0
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.2e-65 254.6 283 48.8
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 4.5e-65 252.7 297 48.1
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.0e-64 251.5 281 45.9
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.0e-64 251.5 283 47.3
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.0e-64 251.5 283 47.3
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 2.2e-64 250.4 289 46.7
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 5.0e-64 249.2 289 46.4
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 1.1e-63 248.1 263 53.2
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 1.9e-63 247.3 283 46.6
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 5.5e-63 245.7 246 53.3
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 7.2e-63 245.4 248 51.6
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 6.1e-62 242.3 248 52.4
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.0e-61 241.5 248 52.0
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.4e-61 241.1 248 51.2
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 5.1e-61 239.2 251 52.2
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 5.1e-61 239.2 294 46.9
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.5e-60 237.7 268 51.5
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 7.4e-60 235.3 261 49.8
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.8e-59 233.4 250 54.0
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 3.7e-59 233.0 295 44.4
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.6e-57 227.6 263 49.0
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.9e-57 225.7 261 48.7
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.7e-56 224.2 256 51.6
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.7e-56 224.2 210 57.1
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.2e-56 223.8 261 50.2
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 6.5e-56 222.2 256 49.6
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.5e-55 221.1 246 54.5
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 3.2e-55 219.9 256 51.6
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 3.2e-55 219.9 261 47.5
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 4.2e-55 219.5 256 50.8
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.6e-54 217.6 248 48.8
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.1e-54 217.2 207 55.1
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 3.6e-54 216.5 257 51.0
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.3e-53 213.8 198 57.6
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.3e-53 213.8 256 49.2
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 6.7e-53 212.2 207 54.1
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.5e-52 211.1 210 54.8
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.0e-52 210.7 178 57.9
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 7.5e-52 208.8 279 41.6
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.2e-49 201.4 128 80.5
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 2.0e-49 200.7 304 39.8
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.5e-49 199.9 131 78.6
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.7e-48 197.6 127 80.3
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 5.5e-47 192.6 317 36.0
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 8.0e-46 188.7 278 42.8
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.8e-45 187.6 151 60.9
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 7.0e-42 175.6 283 36.7
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 4.5e-41 172.9 213 44.1
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 3.2e-39 166.8 169 52.1
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 9.2e-34 148.7 163 49.7
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 7.7e-33 145.6 213 39.9
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.0e-32 145.2 102 72.5
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 4.3e-31 139.8 113 67.3
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 6.1e-30 136.0 258 34.9
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 6.1e-30 136.0 146 52.7
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.3e-24 118.2 65 87.7
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 3.9e-16 90.1 176 36.4
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 5.0e-16 89.7 129 42.6
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 3.4e-12 77.0 76 50.0
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.4e-12 76.6 131 38.2
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 4.4e-12 76.6 81 46.9
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 1.3e-11 75.1 56 66.1
MBI07_g05950_MAGBIO Magnolia biondii HOM05D003063 ORTHO05D003242 1.7e-08 64.7 102 39.2
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 5.6e-07 59.7 41 70.7


User provided reference genes

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