Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv05007 Davidia involucrata HOM05D000176 ORTHO05D000106 3.7e-225 784.6 422 100.0
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 6.8e-78 295.4 243 64.2
CSS0002500 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.0e-74 282.3 243 60.5
CSS0014815 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.0e-74 282.3 243 60.5
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 3.9e-65 253.1 222 59.5
vmacro12437 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 3.9e-65 253.1 244 56.6
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 1.5e-64 251.1 228 58.8
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.5e-64 251.1 228 58.8
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 1.9e-64 250.8 222 57.7
Nitab4.5_0000476g0120 Nicotiana tabacum HOM05D000176 ORTHO05D000106 3.3e-64 250.0 222 58.1
PGSC0003DMG400023346 Solanum tuberosum HOM05D000176 ORTHO05D000106 4.3e-64 249.6 222 56.3
Nitab4.5_0003663g0020 Nicotiana tabacum HOM05D000176 ORTHO05D000106 9.5e-64 248.4 222 57.7
Sopen05g034420 Solanum pennellii HOM05D000176 ORTHO05D000106 1.6e-63 247.7 222 55.9
Solyc05g056010.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.7e-63 246.1 222 55.9
Peaxi162Scf00020g02126 Petunia axillaris HOM05D000176 ORTHO05D000106 1.4e-62 244.6 222 58.1
Peaxi162Scf00384g01218 Petunia axillaris HOM05D000176 ORTHO05D000106 2.3e-62 243.8 222 58.1
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 4.0e-62 243.0 222 57.7
Lj3C925T6 Lonicera japonica HOM05D000176 ORTHO05D000106 4.0e-62 243.0 225 56.0
VMungo0540G2186 Vigna mungo HOM05D000176 ORTHO05D000106 4.0e-62 243.0 222 57.7
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 8.9e-62 241.9 222 59.9
Psat5g183880 Pisum sativum HOM05D000176 ORTHO05D000106 1.5e-61 241.1 222 58.1
Lsat_1_v5_gn_7_67341 Lactuca sativa HOM05D000176 ORTHO05D000106 2.0e-61 240.7 224 55.8
QL08p043592 Quercus lobata HOM05D000176 ORTHO05D000106 2.6e-61 240.4 222 57.2
Lalb_Chr15g0080531 Lupinus albus HOM05D000176 ORTHO05D000106 5.8e-61 239.2 222 57.2
Haze_13472 Corylus avellana HOM05D000176 ORTHO05D000106 7.5e-61 238.8 222 58.1
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 2.2e-60 237.3 244 53.3
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 2.9e-60 236.9 222 55.9
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 4.9e-60 236.1 229 55.9
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 6.4e-60 235.7 304 47.0
MELO3C019704.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.9e-59 234.2 222 56.3
CsaV3_6G015670 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.9e-59 234.2 222 56.3
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 2.4e-59 233.8 223 53.4
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 2.4e-59 233.8 229 55.5
GSVIVG01000818001 Vitis vinifera HOM05D000176 ORTHO05D000106 5.4e-59 232.6 222 56.3
FvH4_6g37771 Fragaria vesca HOM05D000176 ORTHO05D000106 9.2e-59 231.9 222 54.5
Ca_14624_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.2e-58 231.5 223 57.0
Sed0012746 Sechium edule HOM05D000176 ORTHO05D000106 3.5e-58 229.9 222 55.4
TPR.G1842 Trifolium pratense HOM05D000176 ORTHO05D000106 4.6e-58 229.6 222 55.0
RcHm_v2.0_Chr2g0150841 Rosa chinensis HOM05D000176 ORTHO05D000106 6.0e-58 229.2 222 54.5
Lalb_Chr20g0114151 Lupinus albus HOM05D000176 ORTHO05D000106 1.3e-57 228.0 222 55.0
Prupe.3G169000 Prunus persica HOM05D000176 ORTHO05D000106 1.5e-56 224.6 222 54.1
EL10As19g24186 Beta vulgaris HOM05D000176 ORTHO05D000106 2.5e-56 223.8 226 53.1
PGR042G1331 Punica granatum HOM05D000176 ORTHO05D000106 2.1e-55 220.7 222 52.3
MD09G1156100 Malus domestica HOM05D000176 ORTHO05D000106 2.8e-55 220.3 222 54.1
Ah.16g107440 Amaranthus hybridus HOM05D000176 ORTHO05D000106 3.6e-55 219.9 226 51.3
AUR62022514 Chenopodium quinoa HOM05D000176 ORTHO05D000106 3.6e-55 219.9 210 53.3
DCAR_021305 Daucus carota HOM05D000176 ORTHO05D000106 1.4e-54 218.0 188 59.0
AUR62038389 Chenopodium quinoa HOM05D000176 ORTHO05D000106 3.1e-54 216.9 210 53.3
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 4.0e-54 216.5 222 53.6
ECA240G4387 Erigeron canadensis HOM05D000176 ORTHO05D000106 8.9e-54 215.3 224 49.6
AUR62038386 Chenopodium quinoa HOM05D000176 ORTHO05D000106 1.2e-53 214.9 210 52.9
Atru.chr6.3350 Acer truncatum HOM05D000176 ORTHO05D000106 2.6e-53 213.8 222 50.9
Eucgr.A01958 Eucalyptus grandis HOM05D000176 ORTHO05D000106 4.4e-53 213.0 222 52.3
Ciclev10014335m.g Citrus clementina HOM05D000176 ORTHO05D000106 3.8e-52 209.9 222 51.4
TWI36G1460 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 8.4e-52 208.8 222 50.5
Duzib211G0089 Durio zibethinus HOM05D000176 ORTHO05D000106 5.4e-51 206.1 223 50.7
Gorai.001G193000 Gossypium raimondii HOM05D000176 ORTHO05D000106 5.4e-51 206.1 222 50.0
Duzib138G0102 Durio zibethinus HOM05D000176 ORTHO05D000106 1.0e-49 201.8 222 49.5
Aa31sc575G20 Aethionema arabicum HOM05D000176 ORTHO05D000106 3.3e-48 196.8 200 52.0
COL.COLO4_33030 Corchorus olitorius HOM05D000176 ORTHO05D000106 2.1e-47 194.1 222 47.7
MD17G1142200 Malus domestica HOM05D000176 ORTHO05D000106 4.7e-47 193.0 231 48.1
THA.LOC104808853 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 3.8e-44 183.3 226 46.0
AT2G04865 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 3.2e-43 180.3 223 45.7
Thhalv10002429m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 9.3e-43 178.7 224 46.4
AL3G42490 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.2e-42 178.3 223 46.2
C03p55310 Brassica napus HOM05D000176 ORTHO05D000106 1.6e-42 177.9 223 46.2
BolC3t17803H Brassica oleracea HOM05D000176 ORTHO05D000106 1.6e-42 177.9 223 46.2
A03p44500 Brassica napus HOM05D000176 ORTHO05D000106 3.5e-42 176.8 223 46.2
BraA03t13583Z Brassica rapa HOM05D000176 ORTHO05D000106 3.5e-42 176.8 223 46.2
CARHR102890 Cardamine hirsuta HOM05D000176 ORTHO05D000106 3.5e-42 176.8 224 45.5
Atru.chr6.3553_Atru.chr6.3554 Acer truncatum HOM05D000176 ORTHO05D000106 3.0e-41 173.7 231 44.6
Sp3g23470 Schrenkiella parvula HOM05D000176 ORTHO05D000106 3.9e-41 173.3 223 45.3
MD17G1142300 Malus domestica HOM05D000176 ORTHO05D000106 2.2e-36 157.5 157 54.1
HanXRQChr09g0246821 Helianthus annuus HOM05D000176 ORTHO05D000106 4.9e-36 156.4 158 50.0
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 5.1e-33 146.4 211 39.8
Prupe.4G252400 Prunus persica HOM05D000176 ORTHO05D000106 2.1e-31 141.0 211 37.9
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 4.8e-31 139.8 211 38.9
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 1.5e-29 134.8 211 38.9
Hund07743 Selenicereus undatus HOM05D000176 ORTHO05D000106 2.6e-29 134.0 227 39.2
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 7.6e-29 132.5 218 36.7
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 4.9e-28 129.8 211 37.9
RcHm_v2.0_Chr5g0052481 Rosa chinensis HOM05D000176 ORTHO05D000106 1.9e-27 127.9 211 37.0
FvH4_3g28611 Fragaria vesca HOM05D000176 ORTHO05D000106 1.3e-25 121.7 211 35.1
Psat3g039360 Pisum sativum HOM05D000176 ORTHO05D000106 1.5e-24 118.2 139 48.2
Haze_15976 Corylus avellana HOM05D000176 ORTHO05D000106 1.9e-24 117.9 142 41.5
arahy.Tifrunner.gnm1.ann1.PINR01 Arachis hypogaea HOM05D000176 ORTHO05D000106 3.3e-24 117.1 126 44.4
arahy.Tifrunner.gnm1.ann1.6TXF5J Arachis hypogaea HOM05D000176 ORTHO05D000106 1.3e-23 115.2 126 43.7
CANSAT56G1843 Cannabis sativa HOM05D000176 ORTHO05D000106 2.1e-23 114.4 230 33.5
Lj3g0023710 Lotus japonicus HOM05D000176 ORTHO05D000106 2.1e-23 114.4 200 36.0
Ca_23329_v3 Cicer arietinum L. HOM05D000176 ORTHO05D000106 1.4e-22 111.7 201 36.3
Sabra01G0157300 Salix brachista HOM05D000176 ORTHO05D000106 1.2e-18 98.6 202 33.7
Actinidia28384 Actinidia chinensis HOM05D000176 ORTHO05D000106 1.6e-18 98.2 65 75.4
Sed0026480 Sechium edule HOM05D000176 ORTHO05D000106 4.6e-18 96.7 219 29.7
CsaV3_5G025870 Cucumis sativus L. HOM05D000176 ORTHO05D000106 3.0e-17 94.0 220 29.5
MELO3C002881.2 Cucumis melo HOM05D000176 ORTHO05D000106 1.5e-16 91.7 220 28.6
Cfa021595 Carpinus fangiana HOM05D000176 ORTHO05D000106 3.3e-16 90.5 71 60.6
Ciclev10025397m.g Citrus clementina HOM05D000176 ORTHO05D000106 9.7e-16 89.0 227 30.4
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 1.3e-15 88.6 180 32.2
SGA_v2.0_scaffold4221G54449 Striga asiatica HOM05D000176 ORTHO05D000106 3.7e-15 87.0 63 63.5
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 1.8e-14 84.7 150 34.7
Sc12g0003730 Simmondsia chinensis HOM05D000176 ORTHO05D000106 2.9e-12 77.4 191 30.9
A06p13970 Brassica napus HOM05D000176 ORTHO05D000106 5.1e-09 66.6 185 27.6
C05p16290 Brassica napus HOM05D000176 ORTHO05D000106 5.1e-09 66.6 185 27.0
BolC5t30331H Brassica oleracea HOM05D000176 ORTHO05D000106 5.1e-09 66.6 185 27.0
BraA06t24537Z Brassica rapa HOM05D000176 ORTHO05D000106 5.1e-09 66.6 185 27.6
THA.LOC104823099 Tarenaya hassleriana HOM05D000176 ORTHO05D000106 1.1e-08 65.5 223 26.5
A04p19430 Brassica napus HOM05D000176 ORTHO05D000106 3.3e-08 63.9 224 26.8
Sp1g16000 Schrenkiella parvula HOM05D000176 ORTHO05D000106 3.3e-08 63.9 185 25.4
BraA04t17538Z Brassica rapa HOM05D000176 ORTHO05D000106 5.7e-08 63.2 226 26.5
BcaB06g28031 Brassica carinata HOM05D000176 ORTHO05D000106 9.7e-08 62.4 224 26.8
AL1G30280 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 1.3e-07 62.0 185 25.4
BcaC02g08378 Brassica carinata HOM05D000176 ORTHO05D000106 1.3e-07 62.0 171 28.7
C04p55010 Brassica napus HOM05D000176 ORTHO05D000106 1.3e-07 62.0 171 28.7
BolC4t27041H Brassica oleracea HOM05D000176 ORTHO05D000106 2.2e-07 61.2 173 28.3
AT1G17930 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 2.8e-07 60.8 185 25.4
Thhalv10000135m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 3.7e-07 60.5 174 28.2
AT2G25010 Arabidopsis thaliana HOM05D000176 ORTHO05D000106 4.8e-07 60.1 230 27.0
Aa31sc83G70 Aethionema arabicum HOM05D000176 ORTHO05D000106 6.3e-07 59.7 170 28.8
AL4G16100 Arabidopsis lyrata HOM05D000176 ORTHO05D000106 8.2e-07 59.3 171 28.7
SGA_v2.0_scaffold105G30307 Striga asiatica HOM05D000176 ORTHO05D000106 5.3e-06 56.6 28 85.7
BcaB07g34015 Brassica carinata HOM05D000176 ORTHO05D000106 6.9e-06 56.2 111 30.6
Cpa.g.sc136.13 Carica papaya HOM05D000176 ORTHO05D000106 9.1e-06 55.8 28 82.1


User provided reference genes

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