Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.1e-193 679.9 356 100.0
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 1.2e-168 596.7 358 87.4
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 1.3e-151 540.0 357 80.7
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 1.2e-147 526.9 358 78.8
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 1.7e-146 523.1 363 76.9
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 6.4e-146 521.2 357 77.0
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 2.1e-144 516.2 358 77.9
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.0e-143 513.8 339 79.1
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 2.3e-143 512.7 357 75.4
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 3.0e-143 512.3 361 76.2
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 3.9e-143 511.9 357 75.6
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 5.6e-142 508.1 357 75.4
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 1.3e-141 506.9 357 75.4
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 1.3e-141 506.9 357 75.1
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 1.1e-140 503.8 358 76.0
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 2.6e-139 499.2 358 75.4
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 3.4e-139 498.8 370 75.9
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 7.6e-139 497.7 367 75.2
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 1.3e-138 496.9 365 75.9
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 1.7e-138 496.5 357 75.9
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 2.2e-138 496.1 357 74.2
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 8.4e-138 494.2 363 76.0
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 1.9e-137 493.0 358 76.3
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 3.2e-137 492.3 358 75.4
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 7.1e-137 491.1 358 75.7
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 2.1e-136 489.6 359 76.0
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 2.7e-136 489.2 357 72.0
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 2.3e-135 486.1 358 75.1
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 3.0e-135 485.7 364 73.9
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 5.1e-135 485.0 359 74.4
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 6.7e-135 484.6 365 74.0
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 5.6e-134 481.5 362 74.0
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 5.6e-134 481.5 322 78.6
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 9.6e-134 480.7 314 77.4
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.6e-133 479.9 361 75.1
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 1.6e-133 479.9 363 75.5
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.8e-133 479.2 363 75.2
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 4.8e-133 478.4 362 71.8
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 8.1e-133 477.6 357 71.4
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 8.1e-133 477.6 366 72.7
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 1.4e-132 476.9 360 73.9
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 1.8e-132 476.5 361 73.1
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 3.1e-132 475.7 367 71.4
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 4.0e-132 475.3 354 71.5
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 5.3e-132 474.9 362 74.0
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 5.3e-132 474.9 361 74.0
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.6e-131 472.6 304 79.9
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 2.6e-131 472.6 411 66.4
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 5.8e-131 471.5 359 68.8
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 7.6e-131 471.1 308 79.5
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 7.6e-131 471.1 411 66.4
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 2.9e-130 469.2 308 79.9
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 3.8e-130 468.8 359 69.4
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 6.5e-130 468.0 361 71.2
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 6.5e-130 468.0 361 71.5
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 6.5e-130 468.0 382 67.8
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 1.4e-129 466.8 346 72.5
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 1.9e-129 466.5 353 72.5
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 3.2e-129 465.7 370 71.1
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 3.2e-129 465.7 302 79.5
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 5.5e-129 464.9 359 69.4
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.2e-128 463.8 337 73.9
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 2.1e-128 463.0 336 72.3
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 2.1e-128 463.0 336 72.3
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 2.1e-128 463.0 359 71.3
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 2.7e-128 462.6 339 71.7
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 3.5e-128 462.2 356 71.1
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 3.5e-128 462.2 363 71.3
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 4.6e-128 461.8 332 72.9
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 6.0e-128 461.5 303 79.2
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.8e-127 459.9 326 74.2
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 6.7e-127 458.0 365 72.6
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.1e-126 457.2 360 71.1
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.9e-126 456.4 322 75.2
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 3.3e-126 455.7 361 68.4
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 3.3e-126 455.7 359 70.8
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.3e-126 455.7 359 70.8
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.3e-126 455.7 359 70.8
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.3e-126 455.7 322 74.8
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 5.7e-126 454.9 375 68.5
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 7.4e-126 454.5 360 71.7
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.6e-125 453.4 371 68.7
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 2.1e-125 453.0 360 71.1
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 3.7e-125 452.2 351 70.7
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 4.8e-125 451.8 313 73.8
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 3.1e-124 449.1 270 83.7
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 4.1e-124 448.7 387 64.1
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 5.3e-124 448.4 364 70.3
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.5e-123 446.8 356 70.8
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 2.0e-123 446.4 300 78.7
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.3e-122 443.7 280 82.1
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.7e-122 443.4 260 86.5
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 5.0e-122 441.8 362 68.2
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 6.5e-122 441.4 359 66.9
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 8.4e-122 441.0 280 82.5
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.1e-121 440.7 354 68.6
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 1.4e-121 440.3 280 81.1
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 1.9e-121 439.9 279 81.4
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 2.5e-121 439.5 280 81.1
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 4.2e-121 438.7 373 67.8
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 7.2e-121 438.0 362 68.5
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.2e-120 437.2 303 74.9
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 1.6e-120 436.8 280 80.4
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.6e-120 436.8 315 75.6
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.7e-120 436.0 279 80.3
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 3.5e-120 435.6 279 80.3
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 4.6e-120 435.3 303 74.6
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 7.9e-120 434.5 366 66.9
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 1.0e-119 434.1 282 79.8
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 1.0e-119 434.1 356 66.6
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.8e-119 433.3 368 66.8
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.3e-119 433.0 277 80.9
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 2.3e-119 433.0 282 79.8
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.3e-119 433.0 277 80.9
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 3.9e-119 432.2 363 66.9
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 3.9e-119 432.2 313 75.4
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 1.9e-118 429.9 361 69.3
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.1e-116 424.1 358 66.5
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 4.1e-116 422.2 244 90.2
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.5e-115 420.2 345 68.4
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.6e-115 419.5 416 58.2
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 3.4e-115 419.1 396 59.8
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 5.9e-115 418.3 289 75.4
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.7e-112 409.5 302 72.5
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 1.0e-111 407.5 310 68.1
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 2.8e-109 399.4 339 64.0
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 1.5e-107 393.7 225 87.1
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 5.9e-107 391.7 280 76.1
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.7e-106 390.2 289 71.3
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 5.0e-106 388.7 281 74.0
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 7.2e-105 384.8 254 75.6
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 2.1e-104 383.3 247 78.1
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 3.6e-104 382.5 249 77.1
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 8.8e-103 377.9 261 73.2
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 1.1e-102 377.5 241 77.6
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 5.0e-98 362.1 296 67.9
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 1.5e-94 350.5 249 68.3
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 1.5e-94 350.5 309 65.4
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 2.0e-91 340.1 249 69.9
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 6.5e-90 335.1 271 64.6
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 2.0e-86 323.6 305 61.3
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 1.4e-71 274.2 231 64.1
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.2e-59 234.6 149 81.2
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 4.6e-59 232.6 159 77.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 1.7e-53 214.2 151 72.8
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 1.7e-53 214.2 151 72.8
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.6e-48 197.6 108 93.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 6.0e-35 152.5 102 75.5
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.0e-34 151.8 99 76.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.3e-34 150.6 127 64.6
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 8.1e-32 142.1 120 64.2
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.1e-25 121.7 102 69.6
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 1.4e-20 104.8 64 85.9
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 1.9e-20 104.4 61 85.2
Actinidia33630 Actinidia chinensis HOM05D004794 ORTHO05D055622 2.8e-08 63.9 91 48.4


User provided reference genes

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