Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 2.3e-193 678.7 335 100.0
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 2.4e-155 552.4 321 81.9
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.4e-155 552.4 321 81.3
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 2.4e-150 535.8 327 78.3
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 1.2e-149 533.5 322 80.1
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 3.4e-149 531.9 321 78.2
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 5.8e-149 531.2 321 78.2
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 3.8e-148 528.5 321 77.9
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 6.5e-148 527.7 321 78.2
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 4.2e-147 525.0 321 79.1
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 7.1e-147 524.2 321 77.9
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 6.7e-145 517.7 321 76.3
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 3.3e-144 515.4 321 76.0
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 9.6e-144 513.8 321 75.7
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 2.1e-143 512.7 321 75.4
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 3.7e-143 511.9 321 75.7
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.4e-142 509.2 330 73.3
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 4.1e-142 508.4 321 75.1
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 5.3e-142 508.1 297 83.5
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 6.9e-142 507.7 321 75.4
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.0e-142 507.3 321 74.8
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.2e-141 506.9 321 73.8
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 3.4e-141 505.4 321 74.8
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 4.5e-141 505.0 321 75.4
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.0e-140 503.8 321 74.5
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 3.8e-140 501.9 321 75.7
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.5e-140 501.1 321 74.1
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.5e-140 500.7 321 72.9
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.4e-139 500.0 321 74.1
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.9e-139 499.6 331 73.1
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 2.5e-139 499.2 321 73.8
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.2e-138 496.9 321 72.9
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 1.6e-138 496.5 321 74.5
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 2.7e-138 495.7 321 72.6
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 3.6e-138 495.4 321 72.6
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 6.1e-138 494.6 322 74.5
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 7.9e-138 494.2 321 74.1
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.0e-137 493.8 321 73.5
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.0e-137 493.8 321 72.9
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.3e-137 493.4 321 72.0
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 3.0e-137 492.3 321 72.3
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 3.0e-137 492.3 321 72.0
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 1.1e-136 490.3 322 74.8
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.5e-136 489.2 322 72.0
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 3.3e-136 488.8 321 72.3
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 4.3e-136 488.4 321 72.0
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 7.4e-136 487.6 321 74.1
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 9.7e-136 487.3 321 73.5
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 1.3e-135 486.9 322 72.0
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 1.6e-135 486.5 322 72.0
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 2.2e-135 486.1 321 71.7
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 2.8e-135 485.7 322 70.2
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 6.3e-135 484.6 321 72.0
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 8.2e-135 484.2 321 71.7
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 1.8e-134 483.0 321 72.0
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 6.9e-134 481.1 321 72.0
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.2e-133 480.3 321 71.3
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 2.0e-133 479.6 321 71.7
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 2.6e-133 479.2 321 71.3
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 3.4e-133 478.8 321 70.7
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 4.5e-133 478.4 321 71.7
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.0e-132 477.2 322 70.8
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.9e-132 475.7 322 70.8
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 8.5e-132 474.2 321 71.3
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 1.4e-131 473.4 321 71.0
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.4e-131 473.4 321 70.7
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 4.2e-131 471.9 322 71.1
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 2.1e-130 469.5 322 70.5
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 2.1e-130 469.5 321 70.1
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 3.6e-130 468.8 323 68.7
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 6.1e-130 468.0 321 70.4
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 7.9e-130 467.6 358 66.2
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 3.0e-129 465.7 321 69.2
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 5.1e-129 464.9 324 70.1
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.1e-129 464.9 348 66.1
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.1e-129 464.9 348 66.1
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 8.8e-129 464.2 321 68.5
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 2.0e-128 463.0 321 67.3
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 3.3e-128 462.2 322 68.3
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 5.7e-128 461.5 321 66.7
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 7.4e-128 461.1 321 68.5
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 2.8e-127 459.1 321 68.2
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 6.3e-127 458.0 323 67.5
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 2.4e-126 456.1 321 68.2
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 5.3e-126 454.9 321 67.9
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 2.6e-125 452.6 291 74.9
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.7e-124 449.9 334 66.2
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 3.8e-124 448.7 334 66.2
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 3.8e-124 448.7 321 65.7
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 4.8e-119 431.8 321 63.9
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 3.1e-118 429.1 321 62.6
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 4.1e-118 428.7 321 65.4
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 4.1e-118 428.7 321 64.2
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 2.6e-117 426.0 321 62.6
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 4.5e-117 425.2 321 62.6
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 1.3e-116 423.7 321 63.9
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 1.3e-116 423.7 321 62.6
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 1.7e-116 423.3 321 62.3
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.9e-116 422.5 322 62.7
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 3.8e-116 422.2 323 63.2
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.8e-116 422.2 291 69.8
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 5.0e-116 421.8 321 63.9
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 8.5e-116 421.0 291 68.4
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 1.1e-115 420.6 321 63.2
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.1e-115 420.6 354 61.3
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 2.1e-114 416.4 321 61.7
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 2.1e-114 416.4 321 61.7
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 2.1e-114 416.4 321 61.7
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 2.7e-114 416.0 323 63.2
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 8.0e-114 414.5 294 68.7
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 3.0e-113 412.5 321 65.4
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 4.0e-113 412.1 348 58.0
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 6.7e-113 411.4 321 61.1
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 9.7e-112 407.5 294 67.3
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 2.4e-110 402.9 321 60.7
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 4.1e-110 402.1 322 62.7
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 2.2e-108 396.4 322 59.0
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 3.2e-107 392.5 327 57.2
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 3.2e-107 392.5 247 77.3
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 6.8e-105 384.8 293 63.8
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.2e-104 384.0 323 57.0
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 1.6e-101 373.6 292 62.0
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 3.5e-101 372.5 324 55.9
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.0e-97 360.9 320 56.2
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 7.5e-96 354.8 327 52.3
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.3e-92 343.2 291 58.4
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.6e-90 337.0 213 73.2
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 2.8e-90 336.3 295 55.6
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 8.0e-82 308.1 322 51.9
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 3.2e-78 296.2 326 47.5
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.5e-75 287.3 281 55.2
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 1.5e-75 287.3 324 46.3
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.8e-73 280.4 320 50.3
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 3.1e-73 279.6 343 43.1
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 4.1e-70 269.2 261 55.2
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.3e-67 259.2 226 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 9.6e-59 231.5 302 42.1
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 1.1e-57 228.0 143 69.2
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.2e-54 216.5 232 50.0
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 7.8e-53 211.8 127 77.2
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 3.6e-50 203.0 326 40.8
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 3.6e-50 203.0 326 40.8
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.4e-38 164.5 324 33.3
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-37 161.4 157 52.2
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.0e-36 158.3 333 33.0
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.3e-35 152.9 87 82.8
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 8.7e-28 128.6 105 58.1
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 3.1e-25 120.2 124 53.2
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 2.7e-21 107.1 361 25.8
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 1.0e-20 105.1 71 74.6
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.6e-16 90.5 53 77.4
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 3.2e-14 83.6 75 57.3
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 7.4e-11 72.4 49 65.3
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 7.4e-11 72.4 49 65.3
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 7.4e-11 72.4 41 75.6
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 2.8e-10 70.5 219 24.7
Glyma.02G139950 Glycine max HOM05D002163 ORTHO05D002386 2.6e-08 63.9 42 66.7
ECA248G2349 Erigeron canadensis HOM05D000041 ORTHO05D000452 2.9e-07 60.5 50 54.0


User provided reference genes

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