Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04757 Davidia involucrata HOM05D005932 ORTHO05D006213 2.6e-77 292.0 148 100.0
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 3.6e-26 122.1 109 68.8
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 3.0e-20 102.4 109 59.6
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 3.9e-20 102.1 112 58.9
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 8.1e-18 94.4 111 49.5
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 3.2e-14 82.4 113 46.0
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 2.1e-13 79.7 101 47.5
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 7.8e-13 77.8 115 47.0
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 1.7e-12 76.6 114 43.0
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 2.3e-12 76.3 100 51.0
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 3.0e-12 75.9 96 44.8
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 3.0e-12 75.9 97 45.4
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 5.1e-12 75.1 111 44.1
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 5.1e-12 75.1 100 47.0
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 8.6e-12 74.3 107 44.9
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 1.1e-11 73.9 103 45.6
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 1.5e-11 73.6 114 46.5
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 9.5e-11 70.9 122 40.2
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 9.5e-11 70.9 111 44.1
MELO3C002809.2 Cucumis melo HOM05D005932 ORTHO05D006213 1.2e-10 70.5 101 40.6
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 1.6e-10 70.1 100 49.0
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.6e-10 70.1 108 41.7
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.6e-10 70.1 108 41.7
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 2.1e-10 69.7 108 41.7
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 3.6e-10 68.9 119 39.5
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 3.6e-10 68.9 96 44.8
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 6.2e-10 68.2 99 44.4
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 8.1e-10 67.8 95 47.4
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.4e-09 67.0 114 39.5
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 2.4e-09 66.2 110 43.6
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 5.2e-09 65.1 107 40.2
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.5e-08 63.5 107 38.3
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 2.6e-08 62.8 107 39.3
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 2.6e-08 62.8 94 43.6
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 4.4e-08 62.0 95 41.1
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 5.8e-08 61.6 95 42.1
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 5.8e-08 61.6 85 43.5
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 5.8e-08 61.6 114 40.4
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 7.6e-08 61.2 112 41.1
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 9.9e-08 60.8 105 39.0
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 2.9e-07 59.3 106 39.6
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 3.8e-07 58.9 119 37.0
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 3.8e-07 58.9 108 36.1
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 3.8e-07 58.9 95 40.0
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 4.9e-07 58.5 103 36.9
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 6.4e-07 58.2 105 41.0
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 8.4e-07 57.8 86 40.7
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 1.1e-06 57.4 97 47.4
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.4e-06 57.0 101 39.6
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 1.4e-06 57.0 110 40.9
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 1.4e-06 57.0 102 41.2
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.9e-06 56.6 86 39.5
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 2.4e-06 56.2 105 33.3
Dinv41915 Davidia involucrata HOM05D005932 ORTHO05D006213 2.4e-06 56.2 29 89.7
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 2.4e-06 56.2 80 41.2
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 2.4e-06 56.2 104 40.4
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 3.2e-06 55.8 99 46.5
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 3.2e-06 55.8 118 39.0
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 4.2e-06 55.5 110 36.4
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 4.2e-06 55.5 105 38.1
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 5.4e-06 55.1 92 42.4
Sopen02g019050 Solanum pennellii HOM05D005932 ORTHO05D006213 9.2e-06 54.3 113 34.5


User provided reference genes

Program Settings