Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 3.6e-74 281.6 150 100.0
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 4.6e-37 158.3 110 83.6
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 6.2e-34 147.9 111 78.4
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 9.6e-27 124.0 114 65.8
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 3.1e-25 119.0 100 67.0
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 1.5e-24 116.7 114 64.0
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 1.0e-23 114.0 114 64.9
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 1.7e-23 113.2 113 62.8
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 2.2e-23 112.8 114 61.4
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 2.2e-23 112.8 111 62.2
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 2.9e-23 112.5 112 60.7
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 2.9e-23 112.5 121 62.0
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 6.5e-23 111.3 146 52.7
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 8.4e-23 110.9 116 63.8
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 1.9e-22 109.8 96 70.8
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 1.9e-22 109.8 113 62.8
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 3.2e-22 109.0 109 62.4
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 3.2e-22 109.0 111 62.2
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 5.5e-22 108.2 116 62.9
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 5.5e-22 108.2 120 59.2
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 7.1e-22 107.8 120 60.8
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 7.1e-22 107.8 116 57.8
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 7.1e-22 107.8 116 57.8
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 7.1e-22 107.8 116 57.8
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 7.1e-22 107.8 116 57.8
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.6e-21 106.7 105 62.9
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 2.1e-21 106.3 103 62.1
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 2.1e-21 106.3 107 62.6
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 4.6e-21 105.1 65 81.5
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 6.0e-21 104.8 112 58.0
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 6.0e-21 104.8 112 60.7
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 7.9e-21 104.4 121 57.9
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 7.9e-21 104.4 121 57.9
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 1.0e-20 104.0 104 60.6
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 1.0e-20 104.0 115 55.7
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 1.3e-20 103.6 118 55.9
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 1.3e-20 103.6 108 59.3
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 1.3e-20 103.6 115 54.8
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 1.8e-20 103.2 103 62.1
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 2.3e-20 102.8 118 55.9
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 2.3e-20 102.8 109 57.8
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 3.9e-20 102.1 120 58.3
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 6.7e-20 101.3 103 59.2
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 6.7e-20 101.3 104 59.6
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 8.7e-20 100.9 100 60.0
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 8.7e-20 100.9 116 56.0
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 1.1e-19 100.5 115 58.3
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 1.1e-19 100.5 87 67.8
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 1.1e-19 100.5 111 55.0
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 1.5e-19 100.1 121 56.2
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.5e-19 100.1 108 59.3
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.9e-19 99.8 110 58.2
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 1.9e-19 99.8 112 57.1
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 1.9e-19 99.8 118 55.9
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 3.3e-19 99.0 98 62.2
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 3.3e-19 99.0 100 58.0
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 3.3e-19 99.0 117 58.1
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 4.3e-19 98.6 116 57.8
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 4.3e-19 98.6 113 54.9
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 5.7e-19 98.2 120 54.2
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 5.7e-19 98.2 88 64.8
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 7.4e-19 97.8 109 56.0
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 7.4e-19 97.8 116 55.2
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 7.4e-19 97.8 113 54.9
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 9.7e-19 97.4 98 62.2
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 9.7e-19 97.4 111 56.8
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 9.7e-19 97.4 103 59.2
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 9.7e-19 97.4 97 63.9
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.3e-18 97.1 128 51.6
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 1.6e-18 96.7 120 57.5
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.6e-18 96.7 109 56.9
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 1.6e-18 96.7 116 56.0
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 1.6e-18 96.7 115 58.3
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 1.6e-18 96.7 88 62.5
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 2.2e-18 96.3 111 55.0
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 2.2e-18 96.3 111 55.0
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 2.2e-18 96.3 113 54.9
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 2.2e-18 96.3 101 57.4
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 2.2e-18 96.3 109 55.0
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 2.2e-18 96.3 101 57.4
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 2.8e-18 95.9 105 61.9
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 2.8e-18 95.9 99 57.6
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 2.8e-18 95.9 103 61.2
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 2.8e-18 95.9 113 54.9
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 2.8e-18 95.9 112 55.4
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 3.7e-18 95.5 111 55.9
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 3.7e-18 95.5 109 56.9
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.7e-18 95.5 104 55.8
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 6.3e-18 94.7 112 58.0
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 8.2e-18 94.4 109 55.0
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 8.2e-18 94.4 113 54.0
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 8.2e-18 94.4 114 56.1
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 8.2e-18 94.4 109 58.7
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 8.2e-18 94.4 120 54.2
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 8.2e-18 94.4 104 58.7
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 1.4e-17 93.6 103 57.3
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.4e-17 93.6 111 55.0
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 1.4e-17 93.6 113 54.0
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 1.4e-17 93.6 107 55.1
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 1.4e-17 93.6 107 55.1
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 1.4e-17 93.6 98 57.1
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.8e-17 93.2 104 54.8
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 1.8e-17 93.2 89 60.7
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 1.8e-17 93.2 99 55.6
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 1.8e-17 93.2 114 51.8
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 2.4e-17 92.8 113 55.8
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 2.4e-17 92.8 110 53.6
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 2.4e-17 92.8 110 54.5
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 2.4e-17 92.8 110 54.5
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 2.4e-17 92.8 110 54.5
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 2.4e-17 92.8 110 53.6
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 2.4e-17 92.8 110 54.5
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 2.4e-17 92.8 110 53.6
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 2.4e-17 92.8 110 54.5
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 2.4e-17 92.8 110 52.7
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 4.1e-17 92.0 99 54.5
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 4.1e-17 92.0 112 56.2
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 5.3e-17 91.7 109 55.0
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 5.3e-17 91.7 109 55.0
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 6.9e-17 91.3 85 61.2
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 9.0e-17 90.9 98 59.2
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 1.2e-16 90.5 106 51.9
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 1.2e-16 90.5 90 58.9
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 1.5e-16 90.1 113 54.0
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.0e-16 89.7 118 50.0
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 2.6e-16 89.4 85 60.0
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 3.4e-16 89.0 83 63.9
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 3.4e-16 89.0 107 48.6
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 3.4e-16 89.0 49 85.7
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 3.4e-16 89.0 50 86.0
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 4.5e-16 88.6 107 54.2
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 4.5e-16 88.6 91 52.7
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 4.5e-16 88.6 52 84.6
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 5.9e-16 88.2 115 56.5
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 5.9e-16 88.2 108 53.7
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 7.6e-16 87.8 107 52.3
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 7.6e-16 87.8 92 57.6
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 7.6e-16 87.8 56 75.0
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 1.3e-15 87.0 121 47.9
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 2.2e-15 86.3 108 51.9
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 3.8e-15 85.5 116 49.1
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 5.0e-15 85.1 110 56.4
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 5.0e-15 85.1 83 55.4
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 6.5e-15 84.7 46 87.0
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 1.1e-14 84.0 51 76.5
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 2.5e-14 82.8 127 47.2
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 9.3e-14 80.9 79 55.7
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 1.6e-13 80.1 109 48.6
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 2.1e-13 79.7 93 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 1.0e-12 77.4 98 49.0
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 1.0e-12 77.4 107 46.7
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 1.8e-12 76.6 51 68.6
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.8e-12 76.6 103 50.5
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 3.0e-12 75.9 56 69.6
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 5.1e-12 75.1 51 72.5
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 1.1e-11 73.9 100 46.0
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 1.5e-11 73.6 63 58.7
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 1.9e-11 73.2 42 83.3
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 2.8e-10 69.3 103 47.6
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 8.2e-10 67.8 114 41.2
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 1.5e-08 63.5 57 54.4
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 1.5e-08 63.5 57 54.4
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 1.9e-06 56.6 52 53.8
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 1.9e-06 56.6 53 52.8
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 2.5e-06 56.2 60 48.3
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 7.2e-06 54.7 40 65.0
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 7.2e-06 54.7 52 51.9
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 7.2e-06 54.7 52 50.0


User provided reference genes

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