Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 5.3e-50 200.7 98 100.0
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 2.5e-47 191.8 96 96.9
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 8.2e-43 176.8 96 88.5
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.8e-42 175.6 96 87.5
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 1.5e-41 172.6 96 87.5
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 2.0e-41 172.2 97 83.5
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 2.0e-41 172.2 96 85.4
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.6e-41 171.8 96 83.3
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.2e-40 168.7 96 83.3
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 6.5e-40 167.2 96 81.2
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 8.5e-40 166.8 96 83.3
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 1.4e-39 166.0 96 84.4
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.4e-39 166.0 96 82.3
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.9e-39 165.6 95 83.2
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 2.5e-39 165.2 96 82.3
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 4.2e-39 164.5 96 82.3
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 5.5e-39 164.1 96 82.3
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 7.2e-39 163.7 96 83.3
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 9.4e-39 163.3 96 80.2
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 9.4e-39 163.3 96 84.4
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 9.4e-39 163.3 97 79.4
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.1e-38 162.2 96 84.4
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 2.7e-38 161.8 96 80.2
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 6.1e-38 160.6 96 80.2
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 7.9e-38 160.2 96 81.2
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.9e-38 160.2 96 79.2
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.0e-37 159.8 96 79.2
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.4e-37 159.5 96 80.2
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.8e-37 159.1 94 78.7
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 1.8e-37 159.1 96 78.1
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.8e-37 159.1 96 78.1
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.8e-37 159.1 96 79.2
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 3.0e-37 158.3 96 77.1
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 3.0e-37 158.3 96 78.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 3.0e-37 158.3 97 76.3
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.9e-37 157.9 96 76.0
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 5.1e-37 157.5 96 79.2
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 5.1e-37 157.5 96 79.2
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 5.1e-37 157.5 96 78.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 6.7e-37 157.1 96 79.2
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.8e-37 156.8 96 75.0
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 8.8e-37 156.8 96 79.2
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 1.1e-36 156.4 96 75.0
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.1e-36 156.4 96 77.1
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.5e-36 156.0 96 75.0
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.5e-36 156.0 96 75.0
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.5e-36 156.0 96 80.2
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 2.0e-36 155.6 96 75.0
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 2.5e-36 155.2 96 76.0
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 4.3e-36 154.5 96 74.0
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.3e-36 154.5 96 77.1
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.3e-36 154.5 96 77.1
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 4.3e-36 154.5 96 77.1
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 4.3e-36 154.5 96 77.1
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 5.7e-36 154.1 96 77.1
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 5.7e-36 154.1 96 78.1
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 9.7e-36 153.3 96 77.1
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.3e-35 152.9 96 76.0
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.3e-35 152.9 96 78.1
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.3e-35 152.9 96 76.0
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.7e-35 152.5 96 74.0
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 2.2e-35 152.1 96 77.1
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 4.8e-35 151.0 97 76.3
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 6.3e-35 150.6 96 75.0
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 1.1e-34 149.8 96 75.0
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 1.1e-34 149.8 96 76.0
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.1e-34 149.8 94 72.3
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.4e-34 149.4 96 72.9
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.8e-34 149.1 96 71.9
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 3.1e-34 148.3 96 71.9
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 3.1e-34 148.3 95 74.7
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 9.1e-34 146.7 96 71.9
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 2.0e-33 145.6 96 74.0
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.0e-33 145.6 96 74.0
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 2.6e-33 145.2 96 74.0
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.4e-33 144.8 92 72.8
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.5e-33 144.4 96 71.9
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.5e-33 144.4 96 71.9
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 4.5e-33 144.4 97 72.2
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.9e-33 144.1 92 72.8
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 5.9e-33 144.1 96 72.9
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 1.3e-32 142.9 96 72.9
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 1.7e-32 142.5 96 72.9
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 1.7e-32 142.5 96 74.0
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 1.7e-32 142.5 92 71.7
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 1.7e-32 142.5 96 71.9
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.2e-32 142.1 96 71.9
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 3.8e-32 141.4 96 69.8
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 3.8e-32 141.4 96 69.8
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 3.8e-32 141.4 96 69.8
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 3.8e-32 141.4 96 69.8
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 5.0e-32 141.0 97 71.1
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 1.1e-31 139.8 96 69.8
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.1e-31 139.8 96 70.8
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 1.1e-31 139.8 97 71.1
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.1e-31 139.8 96 71.9
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 3.2e-31 138.3 96 68.8
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 3.2e-31 138.3 96 68.8
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 3.2e-31 138.3 96 68.8
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 4.2e-31 137.9 96 68.8
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.2e-31 137.1 96 68.8
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 9.4e-31 136.7 92 68.5
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.1e-30 135.6 101 68.3
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 2.7e-30 135.2 96 67.7
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 6.1e-30 134.0 96 67.7
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 6.1e-30 134.0 96 68.8
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 7.9e-30 133.7 97 68.0
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.8e-29 132.5 81 75.3
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 2.3e-29 132.1 123 56.9
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 3.0e-29 131.7 95 65.3
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 5.1e-29 131.0 96 63.5
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 2.6e-28 128.6 96 62.5
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 3.3e-28 128.3 96 69.8
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.2e-25 119.8 81 67.9
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.5e-25 119.4 97 57.7
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 7.7e-25 117.1 80 68.8
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 7.7e-25 117.1 100 58.0
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 6.5e-24 114.0 88 63.6
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 7.2e-23 110.5 70 74.3
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 8.0e-22 107.1 89 55.1
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 4.0e-21 104.8 61 78.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 4.4e-20 101.3 61 75.4
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 4.4e-20 101.3 96 56.2
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.8e-19 98.6 96 51.0
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.8e-19 97.8 81 53.1
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 3.1e-18 95.1 75 54.7
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 3.1e-18 95.1 81 55.6
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.0e-16 90.1 97 51.5
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.7e-16 89.4 63 68.3
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.9e-16 88.6 81 48.1
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.2e-15 85.1 60 66.7
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-14 83.2 66 59.1
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 6.8e-13 77.4 54 70.4
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 6.8e-13 77.4 54 70.4
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 8.8e-13 77.0 54 70.4
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 1.3e-11 73.2 56 62.5
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.2e-11 72.4 82 40.2
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.4e-10 68.9 43 74.4
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 6.1e-06 54.3 52 42.3


User provided reference genes

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