Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.6e-174 615.9 302 100.0
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.4e-141 506.5 301 82.1
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 9.0e-141 503.8 313 78.3
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.5e-140 501.5 320 80.0
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 6.5e-139 497.7 305 79.0
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 4.2e-138 495.0 307 81.1
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 4.2e-138 495.0 300 79.7
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 4.6e-137 491.5 302 79.8
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 7.9e-137 490.7 295 82.0
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.5e-135 486.5 302 78.1
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 2.5e-135 485.7 308 79.5
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 6.2e-134 481.1 302 78.1
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 8.2e-134 480.7 302 77.8
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.1e-133 480.3 304 76.3
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 1.4e-133 479.9 307 77.2
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 3.4e-132 475.3 300 77.3
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 4.5e-132 474.9 300 76.0
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 1.7e-131 473.0 304 75.0
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.2e-131 472.6 305 76.7
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 5.0e-131 471.5 305 77.7
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 1.1e-130 470.3 309 75.1
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.1e-130 470.3 316 73.1
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 2.5e-130 469.2 302 75.2
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.2e-130 468.8 308 74.4
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 3.2e-130 468.8 308 74.4
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 4.2e-130 468.4 305 75.4
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.5e-130 468.0 305 76.1
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 5.5e-130 468.0 304 75.0
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.6e-129 466.5 302 75.8
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.6e-129 466.5 305 76.1
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 2.1e-129 466.1 305 74.8
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 3.5e-129 465.3 302 75.8
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.5e-129 465.3 308 74.0
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 4.6e-129 464.9 303 75.6
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.0e-128 463.8 308 75.0
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 1.0e-128 463.8 302 74.8
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 2.3e-128 462.6 304 76.3
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 3.0e-128 462.2 302 75.8
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 3.0e-128 462.2 302 76.8
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 5.1e-128 461.5 305 76.4
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.1e-127 460.3 307 75.2
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 1.5e-127 459.9 307 76.9
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.5e-127 459.9 302 74.8
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.5e-127 459.9 302 76.5
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 4.3e-127 458.4 302 74.8
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 4.3e-127 458.4 304 76.0
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 9.7e-127 457.2 302 74.5
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.3e-126 456.8 300 72.0
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 3.7e-126 455.3 301 74.4
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 6.3e-126 454.5 302 73.8
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 8.2e-126 454.1 301 72.4
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.4e-125 453.4 305 75.1
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 2.4e-125 452.6 302 74.2
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 3.1e-125 452.2 307 72.6
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.5e-124 449.9 306 73.9
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 2.6e-124 449.1 301 73.8
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 5.9e-124 448.0 305 73.1
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 7.7e-124 447.6 307 72.3
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.3e-123 446.8 311 72.3
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 2.2e-123 446.0 302 71.5
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 2.9e-123 445.7 302 73.2
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 5.0e-123 444.9 306 74.2
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 5.0e-123 444.9 303 71.6
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 8.5e-123 444.1 302 72.8
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.4e-122 443.4 301 70.8
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.5e-122 442.6 302 73.5
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 3.2e-122 442.2 300 73.7
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 5.5e-122 441.4 301 72.1
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 2.7e-121 439.1 301 70.4
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 6.1e-121 438.0 303 71.6
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.0e-120 437.2 300 72.3
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 1.1e-119 433.7 302 70.5
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.5e-119 433.3 329 66.9
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 1.5e-119 433.3 308 71.4
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 2.0e-119 433.0 327 67.3
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 4.3e-119 431.8 303 71.3
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 9.7e-119 430.6 305 72.5
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 2.0e-116 422.9 304 69.1
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 4.5e-116 421.8 268 77.2
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.7e-115 419.9 301 69.8
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.9e-114 416.4 304 68.4
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 1.9e-114 416.4 303 68.0
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 3.2e-114 415.6 303 68.0
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 4.2e-114 415.2 308 68.8
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 5.5e-114 414.8 307 67.4
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 7.2e-114 414.5 303 67.7
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 2.7e-113 412.5 308 67.9
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 8.8e-112 407.5 302 65.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 8.2e-110 401.0 378 59.3
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.4e-109 400.2 301 64.5
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 7.7e-108 394.4 319 61.4
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 6.1e-105 384.8 305 65.9
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 8.0e-105 384.4 304 65.5
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 5.0e-99 365.2 294 65.6
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 6.5e-99 364.8 227 77.1
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.4e-96 357.1 288 63.2
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 1.8e-96 356.7 305 60.7
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.0e-96 355.9 300 58.7
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 4.4e-95 352.1 216 76.9
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 7.5e-95 351.3 268 66.0
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 5.4e-93 345.1 299 57.2
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.2e-92 344.0 282 63.8
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.7e-91 340.1 299 56.5
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.1e-90 337.4 299 55.9
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 1.0e-88 330.9 300 55.7
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 3.4e-87 325.9 233 70.0
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 2.2e-78 296.6 344 48.3
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 7.8e-76 288.1 187 75.4
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.8e-73 279.6 209 69.4
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.4e-71 272.7 228 59.6
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 5.4e-69 265.4 183 68.3
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 2.0e-68 263.5 330 45.8
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 1.5e-66 257.3 178 68.5
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.3e-58 229.2 235 57.4
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 1.3e-51 207.6 209 52.6
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 7.3e-50 201.8 157 63.7
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 8.1e-49 198.4 198 59.1
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.8e-48 197.2 147 66.7
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 4.9e-46 189.1 291 40.9
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 2.1e-41 173.7 104 78.8
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.1e-37 161.4 308 37.0
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 7.1e-37 158.7 288 39.9
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 9.6e-34 148.3 124 60.5
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-29 134.0 121 62.8
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.1e-25 120.6 83 69.9
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 3.7e-25 119.8 73 80.8
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.8e-24 117.5 121 57.9
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 1.5e-23 114.4 164 45.7
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 1.0e-22 111.7 69 73.9
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 6.5e-22 109.0 135 47.4
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 1.2e-20 104.8 120 50.8
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 9.6e-18 95.1 64 76.6
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 9.6e-18 95.1 150 35.3
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 1.3e-17 94.7 81 66.7
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 2.1e-17 94.0 96 49.0
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 6.3e-17 92.4 89 55.1
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 4.5e-15 86.3 60 71.7
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 6.5e-14 82.4 83 54.2
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 1.9e-13 80.9 56 66.1
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 2.0e-07 60.8 56 57.1
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 3.4e-07 60.1 44 72.7
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.9e-06 57.0 33 72.7


User provided reference genes

Program Settings