Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 9.1e-263 909.8 506 100.0
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 3.9e-213 745.0 509 77.2
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 9.6e-212 740.3 503 76.3
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.3e-211 740.0 503 76.9
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 6.9e-210 734.2 448 81.7
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.2e-209 733.4 509 74.1
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 9.9e-209 730.3 507 73.6
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.8e-208 728.4 503 79.9
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.4e-207 726.5 445 82.9
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 4.2e-207 724.9 450 78.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 2.7e-206 722.2 448 80.4
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 4.6e-206 721.5 448 80.6
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 6.0e-206 721.1 508 74.0
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 3.0e-205 718.8 511 72.8
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 3.9e-205 718.4 440 81.4
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 5.1e-205 718.0 440 81.1
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.6e-204 714.5 501 72.3
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 5.6e-204 714.5 447 79.2
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 8.1e-203 710.7 450 78.0
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.8e-202 709.5 435 82.1
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.8e-202 709.5 439 80.0
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.4e-202 709.1 431 81.7
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 4.0e-202 708.4 445 79.3
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.2e-201 706.8 431 81.4
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.9e-200 702.2 501 71.9
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.8e-200 701.8 445 77.5
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.9e-200 701.4 445 77.3
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 8.4e-200 700.7 445 78.2
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.1e-199 700.3 431 80.3
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-199 699.9 440 78.0
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 4.6e-198 694.9 431 80.7
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 2.3e-197 692.6 505 69.1
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 2.3e-197 692.6 504 70.0
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 3.9e-197 691.8 446 77.8
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 5.1e-197 691.4 446 76.7
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.7e-197 690.6 445 77.8
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.7e-197 690.6 445 77.8
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.9e-196 689.5 436 79.1
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.3e-196 688.7 503 70.6
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.4e-194 683.3 436 78.2
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.4e-194 682.6 432 77.8
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.5e-193 679.9 449 75.5
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.6e-193 679.1 435 77.9
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.7e-192 676.4 504 69.0
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-191 673.7 503 74.4
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 5.5e-191 671.4 445 75.3
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 9.3e-191 670.6 443 76.3
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.2e-190 670.2 444 75.7
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 2.1e-190 669.5 442 76.5
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 2.7e-190 669.1 501 72.7
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.5e-190 668.7 444 74.8
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 6.0e-190 667.9 509 70.7
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.0e-189 665.6 443 74.5
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-188 663.3 431 76.1
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 5.7e-188 661.4 442 77.1
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 9.6e-188 660.6 507 69.8
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.1e-187 659.4 431 76.6
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 3.7e-187 658.7 442 74.9
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 6.2e-187 657.9 433 75.1
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.1e-186 657.1 436 76.1
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 9.0e-186 654.1 447 71.4
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 7.6e-185 651.0 508 72.6
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.0e-184 650.6 433 74.1
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.3e-184 650.2 447 70.9
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.7e-184 649.8 433 74.6
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 2.9e-184 649.0 433 74.8
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.4e-183 646.7 506 65.6
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 5.5e-183 644.8 433 73.9
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 5.5e-183 644.8 433 73.9
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 5.5e-183 644.8 433 73.9
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 5.5e-183 644.8 433 73.9
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.2e-182 643.7 433 73.9
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 3.5e-182 642.1 433 73.2
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.5e-182 642.1 413 77.2
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 1.8e-181 639.8 431 73.3
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.0e-181 639.0 431 74.5
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 3.9e-181 638.6 433 72.7
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 5.1e-181 638.3 506 65.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 1.5e-180 636.7 431 73.3
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 2.5e-180 636.0 439 71.8
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.3e-180 635.6 433 71.4
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 3.3e-180 635.6 433 71.4
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 4.3e-180 635.2 503 70.2
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.3e-180 635.2 433 72.7
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 4.3e-180 635.2 508 65.0
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 5.7e-180 634.8 433 71.6
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.2e-179 632.9 506 64.8
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 3.7e-179 632.1 441 70.1
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 6.3e-179 631.3 440 72.0
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.8e-178 629.8 431 71.9
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 2.4e-178 629.4 431 72.6
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 3.8e-176 622.1 451 69.4
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.4e-175 620.2 441 71.0
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.9e-175 619.8 431 69.8
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.9e-175 619.8 435 72.0
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.9e-175 619.8 433 71.8
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 2.7e-174 615.9 443 70.0
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 3.6e-174 615.5 435 70.1
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 2.8e-171 605.9 433 70.9
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 4.8e-171 605.1 434 69.8
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-170 603.6 444 68.2
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 2.4e-170 602.8 511 65.0
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 4.1e-170 602.1 511 64.8
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 1.2e-169 600.5 444 66.9
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.1e-167 594.0 432 73.4
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.8e-165 586.6 431 69.6
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 3.9e-165 585.5 436 70.0
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 2.2e-163 579.7 433 67.9
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 4.8e-163 578.6 401 71.6
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.7e-160 570.1 438 64.6
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.9e-160 569.3 355 78.6
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 9.4e-159 564.3 435 67.1
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.2e-158 563.9 440 69.3
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.8e-157 560.1 384 71.1
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 3.0e-157 559.3 339 80.5
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-156 557.0 439 66.7
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-155 553.5 395 69.6
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.2e-155 553.1 435 66.7
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.1e-154 548.9 445 65.2
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 4.2e-143 512.3 360 71.1
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 3.0e-141 506.1 501 58.9
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 6.8e-141 505.0 512 56.8
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.8e-139 499.6 361 66.8
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.4e-138 497.3 302 80.8
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.7e-121 439.9 444 48.0
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 4.0e-117 426.0 333 67.6
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.1e-98 364.8 436 50.2
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 7.8e-97 358.6 375 46.1
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 4.4e-92 342.8 198 82.3
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.1e-90 338.2 247 69.2
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.4e-90 337.0 370 51.4
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.4e-87 325.5 359 52.9
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 6.9e-85 318.9 218 77.1
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-81 308.1 207 72.5
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-79 301.6 192 77.1
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.5e-74 283.9 156 87.8
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 3.6e-57 226.9 199 57.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 3.0e-48 197.2 149 71.8
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.7e-47 193.0 114 84.2
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 8.0e-41 172.6 200 49.0
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 5.9e-36 156.4 163 55.8
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 4.2e-34 150.2 93 78.5
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.0e-32 144.1 92 77.2
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 1.2e-28 132.1 474 25.1
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 9.8e-23 112.5 80 70.0
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.2e-22 111.3 71 77.5
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 8.3e-22 109.4 116 50.0
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 4.1e-21 107.1 152 45.4
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 7.0e-21 106.3 70 75.7
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 7.0e-21 106.3 70 75.7
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 3.8e-19 100.5 181 30.9
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.3e-14 85.5 51 80.4
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 4.1e-13 80.5 64 62.5
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 5.0e-11 73.6 50 70.0
Nitab4.5_0003733g0050 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.8e-09 67.8 43 72.1
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.0e-08 65.9 88 47.7
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.6e-07 61.2 50 62.0


User provided reference genes

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