Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 2.8e-266 921.4 470 100.0
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 3.0e-82 310.1 365 56.2
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 7.6e-70 268.9 419 46.8
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 5.1e-66 256.1 404 43.3
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 3.2e-60 236.9 382 43.5
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 1.1e-55 221.9 387 41.6
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 2.6e-54 217.2 405 39.5
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 2.9e-53 213.8 398 41.7
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 3.2e-52 210.3 391 37.9
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 9.3e-52 208.8 388 39.2
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 1.3e-50 204.9 385 40.5
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 2.5e-49 200.7 399 39.6
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 2.4e-47 194.1 395 39.0
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 9.0e-47 192.2 406 36.2
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 2.0e-46 191.0 391 39.4
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 4.5e-46 189.9 392 40.1
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.3e-45 188.3 392 40.1
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 2.9e-45 187.2 391 39.1
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 5.0e-45 186.4 398 38.4
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 1.1e-44 185.3 404 37.9
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 4.2e-44 183.3 390 37.9
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 2.7e-43 180.6 407 36.9
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 1.0e-42 178.7 403 35.2
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 5.1e-42 176.4 384 38.8
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 6.7e-42 176.0 389 35.7
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.1e-41 175.3 388 35.6
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 5.7e-41 172.9 205 57.1
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 7.4e-41 172.6 432 33.6
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 4.8e-40 169.9 395 34.7
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 4.8e-40 169.9 403 38.0
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 2.2e-37 161.0 371 40.4
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 2.9e-37 160.6 381 34.9
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 4.2e-36 156.8 389 36.0
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 5.5e-36 156.4 371 34.8
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 7.9e-35 152.5 420 32.9
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 1.0e-34 152.1 390 37.7
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 6.7e-34 149.4 415 34.2
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 8.8e-34 149.1 398 35.4
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 2.0e-33 147.9 391 32.5
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 3.7e-32 143.7 402 33.6
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 4.8e-32 143.3 375 35.7
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 1.4e-31 141.7 390 34.6
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 5.3e-31 139.8 392 34.2
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 2.0e-30 137.9 346 36.4
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 1.1e-28 132.1 418 33.5
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 5.5e-28 129.8 405 32.8
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 2.7e-27 127.5 399 33.6
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 6.1e-27 126.3 396 32.1
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 7.9e-27 125.9 398 34.4
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 7.9e-27 125.9 388 30.2
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 1.0e-26 125.6 203 43.8
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.0e-26 125.6 396 31.6
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 1.8e-26 124.8 378 36.0
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 3.3e-25 120.6 339 35.7
Dinv41084 Davidia involucrata HOM05D002733 ORTHO05D010023 1.3e-24 118.6 137 62.0
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 6.3e-24 116.3 391 30.2
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 8.2e-24 115.9 392 30.1
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.1e-23 115.5 385 31.7
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 1.4e-23 115.2 402 31.1
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 4.1e-23 113.6 381 32.0
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 9.1e-23 112.5 402 29.4
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 3.5e-22 110.5 376 33.2
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 4.5e-22 110.2 335 31.6
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 5.9e-22 109.8 342 33.3
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 1.3e-21 108.6 351 31.3
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 3.8e-21 107.1 398 30.2
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 8.5e-21 105.9 231 38.5
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 8.5e-21 105.9 165 42.4
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.1e-20 105.5 390 29.7
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 3.2e-20 104.0 390 29.0
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 5.5e-20 103.2 382 30.1
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 6.1e-19 99.8 380 28.7
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 3.3e-17 94.0 240 34.6
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 5.7e-17 93.2 234 34.6
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 9.7e-17 92.4 234 34.6
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 1.7e-16 91.7 244 33.6
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 2.4e-15 87.8 217 37.8
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 5.3e-15 86.7 306 31.7
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 3.8e-13 80.5 342 27.2
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 4.2e-12 77.0 85 52.9
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 1.2e-11 75.5 253 30.8
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 4.7e-11 73.6 321 27.1
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 7.5e-09 66.2 195 30.3
SEGI_26394 Sequoiadendron giganteum HOM05D001841 ORTHO05D001767 1.4e-07 62.0 222 30.6
Nitab4.5_0001413g0010 Nicotiana tabacum HOM05D001841 ORTHO05D001767 1.8e-07 61.6 235 28.9
Nn5g30193 Nelumbo nucifera HOM05D001841 ORTHO05D001767 4.1e-07 60.5 237 30.0
CDE06G1867 Ceratophyllum demersum HOM05D000370 ORTHO05D001366 5.4e-07 60.1 220 30.9
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 5.4e-07 60.1 251 29.9
unitig_37.g12810 Utricularia gibba HOM05D001841 ORTHO05D001767 5.4e-07 60.1 173 31.2
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 7.0e-07 59.7 221 28.1
AL4G19390 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 7.0e-07 59.7 214 29.9
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 2.0e-06 58.2 183 35.0
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 2.7e-06 57.8 210 29.0
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 4.5e-06 57.0 220 31.8
Cc02_g18570 Coffea canephora HOM05D001841 ORTHO05D001767 4.5e-06 57.0 83 43.4
Dinv42133 Davidia involucrata HOM05D001841 ORTHO05D001767 4.5e-06 57.0 145 35.2
Sc08g0000020 Simmondsia chinensis HOM05D001841 ORTHO05D001767 5.9e-06 56.6 216 30.1


User provided reference genes

Program Settings