Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 5.8e-158 560.8 282 100.0
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 9.4e-100 367.5 283 69.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.5e-92 342.8 283 67.1
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.2e-92 342.4 286 65.0
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.3e-88 330.5 284 64.1
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.1e-75 286.6 296 56.4
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 8.0e-75 284.6 282 55.3
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 5.2e-74 282.0 286 54.2
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.5e-73 280.4 290 57.6
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.1e-71 274.2 282 54.6
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.8e-71 273.5 299 53.2
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.8e-71 273.5 284 52.8
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 4.1e-71 272.3 377 47.2
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.7e-70 269.6 288 54.2
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 5.9e-70 268.5 258 53.5
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.0e-69 267.7 282 55.3
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 6.6e-69 265.0 286 53.5
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.5e-68 263.8 292 50.0
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.2e-67 260.8 284 51.8
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.2e-67 260.8 286 51.4
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 4.7e-67 258.8 161 83.2
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 6.2e-67 258.5 292 50.3
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 3.1e-66 256.1 290 51.0
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 4.0e-66 255.8 322 47.8
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 6.8e-66 255.0 298 51.3
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 8.9e-66 254.6 286 50.3
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 8.9e-66 254.6 286 50.3
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 8.9e-66 254.6 286 52.4
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 7.5e-65 251.5 284 51.1
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 3.7e-64 249.2 293 48.1
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.9e-64 248.8 284 50.0
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.1e-63 247.7 286 51.7
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 1.9e-63 246.9 292 49.0
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 9.2e-63 244.6 287 47.7
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.2e-62 244.2 287 48.1
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.6e-62 243.8 296 49.7
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 6.0e-62 241.9 291 48.8
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 7.8e-62 241.5 287 47.7
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.7e-61 240.4 286 52.8
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 3.0e-61 239.6 254 52.4
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 6.6e-61 238.4 296 47.0
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 8.6e-61 238.0 271 52.4
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 1.1e-60 237.7 285 47.0
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.1e-60 237.7 283 49.8
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.1e-60 237.7 356 43.8
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 5.6e-60 235.3 283 46.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 7.3e-60 235.0 289 46.7
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.2e-59 234.2 257 51.8
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 4.7e-59 232.3 283 48.1
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 4.7e-59 232.3 359 43.2
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.7e-59 232.3 207 61.4
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 6.2e-59 231.9 281 48.4
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 6.2e-59 231.9 292 45.9
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.4e-58 230.7 287 46.0
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.0e-58 229.2 287 48.1
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 4.0e-58 229.2 323 46.1
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.5e-57 227.3 288 47.6
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 5.8e-57 225.3 262 49.2
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 7.5e-57 224.9 288 49.0
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.5e-57 224.9 257 50.2
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 3.7e-56 222.6 289 47.8
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 8.3e-56 221.5 334 42.5
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 2.4e-55 219.9 263 52.1
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 5.4e-55 218.8 290 44.8
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.2e-54 217.6 286 45.5
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 1.6e-54 217.2 318 45.0
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.5e-54 216.1 318 44.0
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 3.0e-53 213.0 260 49.2
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.5e-52 210.7 246 50.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 2.5e-52 209.9 282 43.6
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.5e-52 209.9 380 38.2
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 3.3e-52 209.5 205 55.6
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 8.1e-51 204.9 308 44.8
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 8.1e-51 204.9 290 45.9
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.4e-50 204.1 284 43.3
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.3e-50 203.4 312 41.3
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.3e-50 203.4 312 41.3
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 5.2e-50 202.2 248 46.4
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 6.8e-50 201.8 395 36.7
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 2.9e-48 196.4 286 43.0
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 6.4e-48 195.3 295 42.7
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.4e-47 194.1 297 41.8
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.2e-47 193.0 319 40.4
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 3.2e-47 193.0 209 53.1
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 4.1e-47 192.6 283 41.3
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 5.4e-47 192.2 227 48.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 7.1e-47 191.8 205 53.2
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 9.2e-47 191.4 338 39.1
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.2e-46 191.0 303 40.9
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.1e-46 190.3 208 55.8
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 6.0e-46 188.7 287 43.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.0e-45 188.0 287 42.5
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.0e-45 188.0 287 42.5
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.3e-45 186.8 257 44.0
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 3.9e-45 186.0 295 44.7
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 8.6e-45 184.9 235 46.8
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 9.6e-44 181.4 196 51.0
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 2.1e-43 180.3 290 40.7
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 3.6e-43 179.5 242 45.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 6.2e-43 178.7 300 37.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 3.1e-42 176.4 235 45.1
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 5.8e-41 172.2 292 38.0
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 9.9e-41 171.4 201 48.3
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 3.8e-40 169.5 207 51.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 4.9e-40 169.1 207 51.7
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.1e-39 167.9 221 43.4
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.4e-39 167.5 299 37.8
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 4.2e-39 166.0 256 43.4
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 4.2e-39 166.0 206 44.7
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 9.3e-39 164.9 199 46.7
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.6e-38 164.1 278 43.5
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 7.8e-38 161.8 265 43.8
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 3.3e-36 156.4 237 40.9
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 4.3e-36 156.0 285 39.6
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 7.3e-36 155.2 236 43.6
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 9.6e-36 154.8 286 37.8
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.6e-35 154.1 286 37.8
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.6e-35 154.1 286 37.8
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 4.8e-35 152.5 286 37.4
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.1e-34 151.4 166 52.4
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.8e-34 150.6 180 48.9
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.1e-34 149.8 187 50.8
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 5.3e-34 149.1 286 37.1
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 2.9e-32 143.3 213 43.2
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 4.9e-32 142.5 211 42.2
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-31 141.4 96 76.0
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.7e-30 136.7 284 33.8
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 7.9e-30 135.2 160 47.5
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 4.3e-28 129.4 277 35.7
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 7.4e-28 128.6 295 34.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 2.8e-27 126.7 298 33.9
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 6.2e-27 125.6 290 33.4
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 3.1e-26 123.2 298 32.6
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 4.0e-26 122.9 266 35.3
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 4.5e-25 119.4 286 33.9
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 6.7e-21 105.5 297 30.6
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.5e-20 104.4 280 31.4
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 8.1e-19 98.6 83 60.2
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 2.0e-17 94.0 83 60.2
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.9e-14 82.0 122 41.8
Haze_15139 Corylus avellana HOM05D005413 ORTHO05D006536 2.5e-12 77.0 103 44.7
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 2.8e-11 73.6 68 54.4
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 3.1e-10 70.1 120 40.0
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 3.4e-09 66.6 145 34.5
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 3.2e-07 60.1 78 44.9
AUR62005612 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.7e-06 57.0 65 43.1


User provided reference genes

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