Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.7e-233 812.4 432 100.0
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-134 481.9 344 80.5
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.1e-126 457.6 345 75.4
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 2.8e-119 433.0 350 72.3
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.7e-116 423.7 342 72.5
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 9.3e-115 417.9 344 72.1
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.0e-113 412.9 344 70.9
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 6.5e-108 395.2 343 71.1
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.5e-107 393.3 343 68.8
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.1e-106 390.2 323 72.8
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 2.7e-106 389.8 263 81.0
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 3.7e-103 379.4 343 66.5
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.1e-102 377.9 344 66.3
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 1.1e-102 377.9 342 67.3
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 4.0e-102 375.9 424 58.3
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 4.0e-102 375.9 340 64.7
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 2.6e-101 373.2 346 66.2
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.3e-100 370.9 344 66.9
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 1.7e-100 370.5 339 65.2
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 5.0e-100 369.0 342 65.8
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 3.2e-99 366.3 348 66.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.6e-98 364.0 352 62.5
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.6e-98 364.0 344 65.7
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 2.1e-98 363.6 354 65.0
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 5.1e-97 359.0 346 63.3
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.9e-96 357.1 350 63.7
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.5e-96 356.7 339 63.7
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 4.3e-96 355.9 350 63.4
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.3e-95 354.4 345 62.6
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.8e-94 350.5 346 63.3
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 9.0e-94 348.2 350 60.0
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 2.0e-93 347.1 352 59.9
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 5.0e-92 342.4 344 60.8
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 8.5e-92 341.7 344 60.5
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 2.5e-91 340.1 354 59.3
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 2.5e-91 340.1 363 62.0
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 3.2e-91 339.7 341 61.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 9.4e-91 338.2 341 59.8
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 9.4e-91 338.2 363 61.4
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.6e-90 337.4 349 60.7
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 2.7e-90 336.7 356 63.2
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.6e-90 335.9 341 59.5
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.0e-89 334.7 341 59.2
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-89 334.3 347 58.5
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.8e-89 334.0 341 59.8
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 3.0e-89 333.2 342 60.5
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.1e-89 332.4 341 59.5
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 8.8e-89 331.6 339 61.1
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 2.5e-88 330.1 354 58.2
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 5.7e-88 328.9 341 59.2
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 1.7e-87 327.4 340 61.2
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.4e-86 324.3 348 57.2
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.4e-86 324.3 338 58.9
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 4.1e-86 322.8 342 59.4
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 3.4e-85 319.7 337 58.5
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.3e-84 317.8 373 56.0
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 1.7e-84 317.4 354 58.2
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.2e-84 317.0 428 52.1
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 8.5e-84 315.1 354 57.9
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.4e-83 314.3 350 57.1
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 1.9e-83 313.9 266 69.5
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 3.2e-83 313.2 270 68.5
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.2e-83 313.2 277 69.3
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.2e-83 313.2 277 69.3
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 9.4e-83 311.6 341 57.8
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 2.7e-82 310.1 356 57.6
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 2.7e-82 310.1 347 59.9
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 3.9e-81 306.2 352 56.5
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 5.1e-81 305.8 261 67.4
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 6.7e-81 305.4 346 58.1
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.1e-80 304.7 351 56.7
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 4.4e-80 302.8 288 63.9
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 8.2e-79 298.5 343 56.0
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.8e-78 297.4 343 54.8
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.8e-78 297.4 343 56.6
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.1e-78 296.6 344 57.6
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 2.0e-77 293.9 348 54.6
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 7.7e-77 292.0 294 62.6
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 6.5e-76 288.9 339 57.8
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 8.5e-76 288.5 347 54.8
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.9e-75 287.3 344 52.6
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 4.2e-75 286.2 341 54.3
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 5.5e-75 285.8 295 59.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.2e-74 284.6 341 54.5
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.2e-74 284.6 342 55.3
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 1.6e-74 284.3 341 52.2
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 3.6e-74 283.1 342 54.7
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 1.4e-73 281.2 341 52.2
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.8e-73 280.8 346 52.9
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 2.3e-73 280.4 339 53.7
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.3e-71 274.6 319 57.4
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 2.2e-71 273.9 397 48.1
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.1e-70 271.6 339 52.5
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 5.3e-70 269.2 397 47.6
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 1.2e-69 268.1 350 51.4
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 3.5e-69 266.5 342 51.5
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 4.5e-69 266.2 347 51.6
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 2.9e-68 263.5 306 58.5
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 8.5e-68 261.9 279 62.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 3.6e-66 256.5 344 52.6
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.7e-64 249.2 346 48.0
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 9.8e-64 248.4 337 50.4
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 1.8e-62 244.2 346 49.4
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.7e-60 237.7 342 50.3
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.9e-60 236.9 369 45.0
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 5.0e-60 236.1 339 50.4
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 5.0e-60 236.1 339 50.4
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 6.5e-60 235.7 335 50.4
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.9e-59 234.2 339 50.4
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 1.9e-59 234.2 339 50.4
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.5e-59 233.8 337 49.9
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 3.2e-59 233.4 332 49.4
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 3.2e-59 233.4 339 49.9
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 5.5e-59 232.6 268 53.0
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 5.5e-59 232.6 345 49.9
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 7.2e-59 232.3 336 49.7
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-58 231.1 204 73.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-58 231.1 204 73.0
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 4.7e-58 229.6 353 45.9
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 2.3e-57 227.3 256 55.9
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.3e-55 219.2 213 68.1
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 8.3e-55 218.8 343 46.4
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 7.7e-53 212.2 346 47.7
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 3.8e-52 209.9 278 50.0
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 7.2e-51 205.7 175 66.3
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 7.8e-45 185.7 288 44.1
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.6e-44 182.6 207 60.9
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.1e-43 181.8 207 60.9
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.9e-43 181.0 207 60.4
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.9e-43 181.0 350 41.4
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.5e-43 180.6 207 60.4
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.3e-43 179.1 207 59.9
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.2e-42 178.3 340 42.6
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.6e-42 177.9 207 59.9
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 1.6e-42 177.9 114 79.8
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.8e-41 174.5 277 45.5
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.1e-38 163.3 207 55.6
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.7e-37 160.6 258 48.4
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.7e-36 157.9 297 42.8
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 5.0e-36 156.4 106 79.2
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 4.7e-34 149.8 122 69.7
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 4.7e-34 149.8 119 71.4
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.7e-29 134.0 68 89.7
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 1.7e-28 131.3 213 46.0
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 4.3e-27 126.7 220 43.2
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 3.1e-17 94.0 216 39.8
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 5.4e-14 83.2 64 70.3
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 1.0e-12 79.0 148 38.5
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.5e-11 75.1 89 53.9
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 1.9e-11 74.7 181 32.6
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 5.6e-11 73.2 161 39.1
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 2.4e-09 67.8 71 60.6
AagrBONN_evm.TU.Sc2ySwM_117.2428 Anthoceros agrestis HOM05D025386 ORTHO05D026614 3.1e-09 67.4 163 34.4
QL07p047840 Quercus lobata HOM05D004683 ORTHO05D005388 1.1e-06 58.9 49 59.2
Actinidia07459 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.9e-06 58.2 34 76.5
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 2.4e-06 57.8 81 48.1


User provided reference genes

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