Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 2.3e-66 255.4 123 100.0
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.1e-33 146.7 98 76.5
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 4.3e-33 144.8 95 70.5
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 9.0e-31 137.1 81 79.0
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 1.3e-29 133.3 72 84.7
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 1.9e-28 129.4 81 75.3
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.9e-28 129.4 81 74.1
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.5e-28 129.0 72 83.3
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.2e-28 128.6 81 75.3
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 3.2e-28 128.6 81 72.8
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 3.2e-28 128.6 88 70.5
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 4.2e-28 128.3 81 74.1
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 4.2e-28 128.3 81 74.1
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 5.5e-28 127.9 86 68.6
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 9.3e-28 127.1 88 69.3
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 1.6e-27 126.3 81 71.6
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 2.1e-27 125.9 81 69.1
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 3.5e-27 125.2 81 69.1
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 6.0e-27 124.4 81 70.4
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 7.9e-27 124.0 81 70.4
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 7.9e-27 124.0 81 70.4
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 7.9e-27 124.0 83 72.3
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 1.0e-26 123.6 81 75.3
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 1.3e-26 123.2 81 70.4
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 1.8e-26 122.9 81 69.1
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 3.0e-26 122.1 81 69.1
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 3.0e-26 122.1 81 67.9
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 3.9e-26 121.7 81 71.6
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 3.9e-26 121.7 82 69.5
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 5.1e-26 121.3 81 67.9
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 6.7e-26 120.9 81 69.1
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 8.7e-26 120.6 81 67.9
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 1.5e-25 119.8 82 65.9
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 1.9e-25 119.4 79 67.1
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 1.9e-25 119.4 81 66.7
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.3e-25 118.6 77 70.1
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.3e-25 118.6 77 70.1
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 3.3e-25 118.6 81 67.9
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 3.3e-25 118.6 81 67.9
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 3.3e-25 118.6 73 75.3
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 3.3e-25 118.6 92 62.0
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 4.3e-25 118.2 81 69.1
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 4.3e-25 118.2 81 67.9
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 5.7e-25 117.9 81 67.9
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 5.7e-25 117.9 72 75.0
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 5.7e-25 117.9 103 56.3
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 7.4e-25 117.5 81 66.7
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 9.7e-25 117.1 81 71.6
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 9.7e-25 117.1 81 69.1
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 9.7e-25 117.1 81 69.1
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.2e-24 115.9 72 75.0
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 2.8e-24 115.5 82 68.3
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 2.8e-24 115.5 84 66.7
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.7e-24 115.2 81 69.1
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.8e-24 114.8 81 67.9
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 8.2e-24 114.0 81 69.1
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.1e-23 113.6 72 73.6
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.1e-23 113.6 81 67.9
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 1.1e-23 113.6 81 67.9
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.1e-23 113.6 81 67.9
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 1.4e-23 113.2 107 54.2
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 1.4e-23 113.2 83 65.1
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.8e-23 112.8 79 68.4
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.4e-23 112.5 69 76.8
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 3.1e-23 112.1 82 65.9
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 3.1e-23 112.1 81 67.9
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.1e-23 111.7 81 66.7
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.1e-23 111.7 81 66.7
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 5.3e-23 111.3 81 66.7
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 5.3e-23 111.3 82 65.9
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 6.9e-23 110.9 77 71.4
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 6.9e-23 110.9 82 67.1
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 9.0e-23 110.5 81 65.4
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 1.2e-22 110.2 61 82.0
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 1.2e-22 110.2 88 62.5
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 1.2e-22 110.2 72 68.1
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 1.2e-22 110.2 61 80.3
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 1.5e-22 109.8 116 53.4
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.5e-22 109.8 78 64.1
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.0e-22 109.4 64 78.1
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 2.6e-22 109.0 96 56.2
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.6e-22 109.0 80 66.2
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 2.6e-22 109.0 88 62.5
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 3.4e-22 108.6 81 64.2
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 3.4e-22 108.6 80 62.5
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.4e-22 108.6 79 65.8
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 4.5e-22 108.2 79 63.3
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 5.9e-22 107.8 104 55.8
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 7.6e-22 107.5 63 74.6
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.0e-21 107.1 67 74.6
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 1.3e-21 106.7 68 70.6
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.3e-21 106.7 77 68.8
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 1.7e-21 106.3 81 63.0
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.7e-21 106.3 81 64.2
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 1.7e-21 106.3 81 63.0
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 2.9e-21 105.5 63 76.2
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.9e-21 105.5 59 78.0
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 2.9e-21 105.5 69 66.7
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.1e-20 103.6 82 65.9
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.5e-20 102.4 70 67.1
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 3.2e-20 102.1 65 72.3
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 4.2e-20 101.7 62 69.4
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.2e-20 101.7 82 59.8
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 5.5e-20 101.3 61 72.1
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 9.3e-20 100.5 54 79.6
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 1.2e-19 100.1 63 68.3
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 1.6e-19 99.8 54 79.6
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 1.6e-19 99.8 54 79.6
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 1.6e-19 99.8 54 79.6
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.6e-19 99.8 61 70.5
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 1.6e-19 99.8 82 58.5
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 2.1e-19 99.4 54 77.8
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.1e-19 99.4 74 63.5
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.7e-19 99.0 66 66.7
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 3.6e-19 98.6 54 77.8
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 3.6e-19 98.6 58 72.4
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 3.6e-19 98.6 58 72.4
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 4.6e-19 98.2 70 65.7
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 4.6e-19 98.2 73 60.3
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 4.6e-19 98.2 74 63.5
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 4.6e-19 98.2 50 82.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.0e-18 97.1 83 56.6
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.4e-18 96.7 68 69.1
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.8e-18 96.3 63 66.7
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.8e-18 96.3 63 66.7
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.8e-18 96.3 65 73.8
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 1.8e-18 96.3 48 85.4
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 2.3e-18 95.9 50 78.0
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 2.3e-18 95.9 47 87.2
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 3.0e-18 95.5 74 62.2
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 5.1e-18 94.7 50 82.0
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 8.8e-18 94.0 73 58.9
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 8.8e-18 94.0 73 58.9
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.1e-17 93.6 83 54.2
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 3.3e-17 92.0 50 76.0
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 3.3e-17 92.0 50 76.0
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 3.3e-17 92.0 50 76.0
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 4.3e-17 91.7 84 53.6
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 5.7e-17 91.3 60 68.3
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 5.7e-17 91.3 55 72.7
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 7.4e-17 90.9 46 84.8
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 9.7e-17 90.5 76 60.5
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 9.7e-17 90.5 76 60.5
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.3e-16 90.1 47 76.6
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 2.2e-16 89.4 58 67.2
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 2.2e-16 89.4 55 76.4
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 8.2e-16 87.4 46 80.4
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 8.2e-16 87.4 46 80.4
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 9.1e-15 84.0 42 78.6
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 8.5e-13 77.4 43 74.4
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 5.5e-12 74.7 54 68.5
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 3.9e-10 68.6 50 66.0
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 8.2e-08 60.8 65 47.7
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 1.4e-07 60.1 50 62.0


User provided reference genes

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