Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04291 Davidia involucrata HOM05D007910 ORTHO05D010001 3.0e-99 365.2 184 100.0
Dinv04293 Davidia involucrata HOM05D007910 ORTHO05D010001 1.1e-83 313.5 164 94.5
Rhsim13G0124900 Rhododendron simsii HOM05D007910 ORTHO05D010001 3.8e-41 172.2 153 59.5
vmacro21871 Vaccinium macrocarpon HOM05D007910 ORTHO05D010001 1.1e-40 170.6 159 57.9
Lj1A1158T20 Lonicera japonica HOM05D007910 ORTHO05D010001 9.3e-40 167.5 152 57.9
GSVIVG01021777001 Vitis vinifera HOM05D007910 ORTHO05D010001 9.3e-40 167.5 160 55.0
Nn026s41567 Nelumbo nucifera HOM05D007910 ORTHO05D010001 7.9e-39 164.5 163 52.1
Nn7g37803 Nelumbo nucifera HOM05D007910 ORTHO05D010001 7.9e-39 164.5 163 52.1
Prupe.4G100500 Prunus persica HOM05D007910 ORTHO05D010001 3.9e-38 162.2 162 52.5
MBI18_g46679_MAGBIO Magnolia biondii HOM05D007910 ORTHO05D010001 2.5e-37 159.5 152 54.6
FAN21G2734 Fragaria x ananassa HOM05D007910 ORTHO05D010001 1.6e-36 156.8 167 47.9
FvH4_3g11180 Fragaria vesca HOM05D007910 ORTHO05D010001 2.1e-36 156.4 164 48.8
RcHm_v2.0_Chr5g0018091 Rosa chinensis HOM05D007910 ORTHO05D010001 1.1e-35 154.1 162 48.8
TAR626G1265 Trochodendron aralioides HOM05D007910 ORTHO05D010001 1.1e-35 154.1 155 54.2
MD05G1265400 Malus domestica HOM05D007910 ORTHO05D010001 1.8e-35 153.3 159 50.3
FAN16G2635 Fragaria x ananassa HOM05D007910 ORTHO05D010001 3.1e-35 152.5 169 47.3
Manes.06G051900 Manihot esculenta HOM05D007910 ORTHO05D010001 3.4e-34 149.1 161 49.1
Haze_05938 Corylus avellana HOM05D007910 ORTHO05D010001 5.8e-34 148.3 154 50.0
Ciclev10017495m.g Citrus clementina HOM05D007910 ORTHO05D010001 1.3e-33 147.1 164 48.2
MD10G1243400 Malus domestica HOM05D007910 ORTHO05D010001 1.4e-32 143.7 166 48.2
Atru.chr10.696 Acer truncatum HOM05D007910 ORTHO05D010001 1.9e-32 143.3 172 49.4
COL.COLO4_26877 Corchorus olitorius HOM05D007910 ORTHO05D010001 2.5e-32 142.9 163 50.3
Oeu000507.1 Olea europaea HOM05D007910 ORTHO05D010001 5.5e-32 141.7 134 54.5
Cc02_g32890 Coffea canephora HOM05D007910 ORTHO05D010001 9.3e-32 141.0 163 49.7
Potri.011G157600 Populus trichocarpa HOM05D007910 ORTHO05D010001 6.1e-31 138.3 157 49.0
QL05p064520 Quercus lobata HOM05D007910 ORTHO05D010001 1.8e-30 136.7 160 47.5
DCAR_003146 Daucus carota HOM05D007910 ORTHO05D010001 3.9e-30 135.6 138 55.1
Duzib160G0797 Durio zibethinus HOM05D007910 ORTHO05D010001 8.7e-30 134.4 164 47.0
FAN25G2020 Fragaria x ananassa HOM05D007910 ORTHO05D010001 1.5e-29 133.7 138 50.0
Ca_18305_v3 Cicer arietinum L. HOM05D007910 ORTHO05D010001 4.3e-29 132.1 157 43.3
CiPaw.09G147500 Carya illinoinensis HOM05D007910 ORTHO05D010001 9.7e-29 131.0 156 46.8
TWI15G0993 Tripterygium wilfordii HOM05D007910 ORTHO05D010001 2.2e-28 129.8 146 47.3
CiPaw.09G170900 Carya illinoinensis HOM05D007910 ORTHO05D010001 6.3e-28 128.3 156 46.2
Medtr4g094462 Medicago truncatula HOM05D007910 ORTHO05D010001 6.3e-28 128.3 159 43.4
Aqoxy1G01509 Aquilegia oxysepala HOM05D007910 ORTHO05D010001 3.1e-27 125.9 151 44.4
Sabra11G0142500 Salix brachista HOM05D007910 ORTHO05D010001 1.2e-26 124.0 159 44.7
Psat7g094240 Pisum sativum HOM05D007910 ORTHO05D010001 1.5e-26 123.6 169 37.9
Migut.M01922 Erythranthe guttata HOM05D007910 ORTHO05D010001 5.9e-26 121.7 170 40.0
Lj4g0005622 Lotus japonicus HOM05D007910 ORTHO05D010001 3.8e-25 119.0 159 41.5
Thhalv10027352m.g Eutrema salsugineum HOM05D007910 ORTHO05D010001 5.0e-25 118.6 139 41.7
Carub.0007s2066 Capsella rubella HOM05D007910 ORTHO05D010001 8.5e-25 117.9 137 45.3
CARHR227330 Cardamine hirsuta HOM05D007910 ORTHO05D010001 1.9e-24 116.7 150 41.3
TPR.G23797 Trifolium pratense HOM05D007910 ORTHO05D010001 3.2e-24 115.9 154 44.2
Sp7g18860 Schrenkiella parvula HOM05D007910 ORTHO05D010001 4.2e-24 115.5 139 42.4
AL7G33360 Arabidopsis lyrata HOM05D007910 ORTHO05D010001 1.2e-23 114.0 142 40.1
A03p52480 Brassica napus HOM05D007910 ORTHO05D010001 1.6e-23 113.6 150 40.0
PSO541G4848 Papaver somniferum HOM05D007910 ORTHO05D010001 1.6e-23 113.6 153 43.1
PSO675G3196 Papaver somniferum HOM05D007910 ORTHO05D010001 2.1e-23 113.2 153 41.2
AT4G20790 Arabidopsis thaliana HOM05D007910 ORTHO05D010001 2.7e-23 112.8 150 39.3
BcaNung05061 Brassica carinata HOM05D007910 ORTHO05D010001 4.6e-23 112.1 146 39.7
C07p50930 Brassica napus HOM05D007910 ORTHO05D010001 4.6e-23 112.1 146 39.7
BolC7t45593H Brassica oleracea HOM05D007910 ORTHO05D010001 4.6e-23 112.1 146 39.7
Eucgr.K01975 Eucalyptus grandis HOM05D007910 ORTHO05D010001 6.1e-23 111.7 155 41.3
A01p12210 Brassica napus HOM05D007910 ORTHO05D010001 7.9e-23 111.3 151 40.4
BraA01t01162Z Brassica rapa HOM05D007910 ORTHO05D010001 7.9e-23 111.3 151 40.4
ATR0579G098 Amborella trichopoda HOM05D007910 ORTHO05D010001 1.0e-22 110.9 137 41.6
arahy.Tifrunner.gnm1.ann1.BNP38Z Arachis hypogaea HOM05D007910 ORTHO05D010001 1.4e-22 110.5 177 42.9
BcaNung04152 Brassica carinata HOM05D007910 ORTHO05D010001 1.4e-22 110.5 153 39.9
BraA03t14325Z Brassica rapa HOM05D007910 ORTHO05D010001 1.4e-22 110.5 149 39.6
Phvul.002G201400 Phaseolus vulgaris HOM05D007910 ORTHO05D010001 1.4e-22 110.5 151 39.7
Glyma.05G124200 Glycine max HOM05D007910 ORTHO05D010001 1.8e-22 110.2 147 41.5
C01p14520 Brassica napus HOM05D007910 ORTHO05D010001 2.3e-22 109.8 151 40.4
BolC1t01408H Brassica oleracea HOM05D007910 ORTHO05D010001 2.3e-22 109.8 151 40.4
BcaC09g51309 Brassica carinata HOM05D007910 ORTHO05D010001 5.1e-22 108.6 151 40.4
Gohir.D10G006000 Gossypium hirsutum HOM05D007910 ORTHO05D010001 3.3e-21 105.9 144 39.6
Aa31LG6G2880 Aethionema arabicum HOM05D007910 ORTHO05D010001 4.3e-21 105.5 152 42.1
Gorai.011G006900 Gossypium raimondii HOM05D007910 ORTHO05D010001 4.3e-21 105.5 144 39.6
Gohir.A10G006000 Gossypium hirsutum HOM05D007910 ORTHO05D010001 7.4e-21 104.8 144 40.3
BcaNung05682 Brassica carinata HOM05D007910 ORTHO05D010001 2.8e-20 102.8 149 36.9
Cfa000773 Carpinus fangiana HOM05D007910 ORTHO05D010001 3.7e-20 102.4 155 40.6
ClCG03G008550 Citrullus lanatus HOM05D007910 ORTHO05D010001 3.7e-20 102.4 155 36.8
SalBow8G4650 Salvia bowleyana HOM05D007910 ORTHO05D010001 1.4e-19 100.5 151 40.4
Sed0009557 Sechium edule HOM05D007910 ORTHO05D010001 3.1e-19 99.4 158 38.0
VMungo0251G0673 Vigna mungo HOM05D007910 ORTHO05D010001 2.5e-16 89.7 139 37.4
MELO3C002871.2 Cucumis melo HOM05D007910 ORTHO05D010001 4.2e-16 89.0 136 37.5
Glyma.08G079400 Glycine max HOM05D007910 ORTHO05D010001 9.4e-16 87.8 152 37.5
CsaV3_1G037620 Cucumis sativus L. HOM05D007910 ORTHO05D010001 4.7e-15 85.5 144 36.8
Os06g0587200 Oryza sativa ssp. japonica HOM05D000021 ORTHO05D000010 6.1e-07 58.5 103 32.0
CANSAT11G0242 Cannabis sativa HOM05D000021 ORTHO05D000010 4.0e-06 55.8 85 35.3
Ciclev10027227m.g Citrus clementina HOM05D000021 ORTHO05D000010 5.2e-06 55.5 88 35.2
Potri.001G042500 Populus trichocarpa HOM05D000021 ORTHO05D000010 6.7e-06 55.1 88 36.4
CiPaw.01G256200 Carya illinoinensis HOM05D000021 ORTHO05D000010 8.8e-06 54.7 86 36.0
QL05p036804 Quercus lobata HOM05D000021 ORTHO05D000010 8.8e-06 54.7 83 33.7


User provided reference genes

Program Settings