Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 1.5e-163 579.3 277 100.0
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 4.2e-137 491.5 277 81.9
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 2.2e-133 479.2 277 81.6
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 8.3e-133 477.2 277 80.1
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.2e-131 473.4 278 80.2
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 1.2e-131 473.4 277 78.3
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 5.0e-130 468.0 277 78.7
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.9e-129 466.1 280 77.5
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.5e-129 465.7 277 78.7
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 4.3e-129 464.9 280 77.1
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.6e-128 463.0 281 77.6
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 1.6e-128 463.0 278 77.3
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 2.8e-128 462.2 277 76.9
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 6.1e-128 461.1 280 76.8
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 1.0e-127 460.3 284 76.1
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.4e-127 459.9 279 78.1
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.4e-127 459.9 280 76.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.8e-127 459.5 279 76.7
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 2.3e-127 459.1 279 79.6
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 6.8e-127 457.6 277 76.9
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 6.8e-127 457.6 279 77.8
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 2.6e-126 455.7 280 76.4
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 4.4e-126 454.9 281 74.4
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 4.4e-126 454.9 280 76.8
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 4.4e-126 454.9 288 75.7
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 5.7e-126 454.5 277 76.9
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.9e-125 452.2 282 76.6
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 1.4e-124 449.9 276 75.4
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 2.4e-124 449.1 279 75.6
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 4.1e-124 448.4 280 77.1
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 9.2e-124 447.2 279 76.3
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 4.6e-123 444.9 277 74.7
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 4.6e-123 444.9 280 75.7
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 2.3e-122 442.6 277 74.0
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 6.6e-122 441.0 279 74.9
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 8.6e-122 440.7 283 73.1
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 8.6e-122 440.7 283 73.1
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.6e-120 436.4 276 75.0
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.1e-120 436.0 267 73.4
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.4e-119 433.3 259 76.4
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.4e-119 433.3 279 74.6
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 1.4e-119 433.3 280 73.6
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 2.3e-119 432.6 277 73.6
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 4.0e-119 431.8 282 72.3
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 5.2e-119 431.4 280 73.2
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 8.9e-119 430.6 323 66.9
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.4e-118 428.3 284 71.8
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 4.4e-118 428.3 284 71.8
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 7.5e-118 427.6 278 73.4
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 1.7e-117 426.4 277 73.3
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 1.7e-117 426.4 275 72.0
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.9e-117 425.6 280 72.9
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 4.9e-117 424.9 282 72.3
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 8.3e-117 424.1 277 73.3
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.3e-117 424.1 391 56.5
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.4e-116 423.3 288 68.4
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.9e-116 422.9 280 71.8
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.9e-116 422.9 279 72.4
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.2e-116 422.2 315 65.4
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 5.4e-116 421.4 280 71.4
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 7.0e-116 421.0 280 71.8
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 7.0e-116 421.0 283 71.4
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 9.2e-116 420.6 280 71.8
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 9.2e-116 420.6 275 72.4
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 2.0e-115 419.5 276 72.1
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 3.5e-115 418.7 280 71.8
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 7.8e-115 417.5 277 71.8
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.0e-114 417.2 280 72.1
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 1.0e-114 417.2 280 71.8
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.3e-114 416.8 281 71.2
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.3e-114 416.8 281 71.2
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 1.3e-114 416.8 353 60.3
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 2.3e-114 416.0 272 71.0
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 3.0e-114 415.6 278 71.6
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 3.9e-114 415.2 281 71.2
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 3.9e-114 415.2 281 71.2
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.9e-114 415.2 384 56.8
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 6.6e-114 414.5 306 65.7
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.1e-113 413.7 280 71.1
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.1e-113 413.7 280 71.1
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.1e-113 413.7 280 71.1
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.1e-111 407.1 275 70.5
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.5e-110 403.3 235 79.6
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.0e-106 390.6 277 69.3
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 3.0e-106 389.0 235 76.6
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 5.6e-105 384.8 277 66.1
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 2.0e-102 376.3 322 59.3
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 7.6e-102 374.4 234 74.8
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 7.6e-102 374.4 274 65.3
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.9e-101 372.5 280 62.5
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 7.1e-100 367.9 279 65.9
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 1.2e-99 367.1 270 64.8
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 6.0e-99 364.8 278 64.7
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.3e-98 363.6 279 65.2
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 5.1e-98 361.7 305 59.0
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.8e-96 355.9 235 70.6
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 5.2e-95 351.7 288 61.8
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 1.4e-87 327.0 267 58.8
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.4e-87 327.0 186 80.6
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 5.8e-86 321.6 186 81.2
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.2e-83 313.9 322 52.8
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.6e-83 313.5 206 72.8
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 8.7e-82 307.8 228 65.8
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 9.6e-81 304.3 144 98.6
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 2.1e-80 303.1 216 66.2
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 6.9e-79 298.1 273 54.9
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 2.9e-77 292.7 187 73.3
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.6e-75 287.0 304 50.0
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 1.8e-71 273.5 268 51.9
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 3.4e-62 242.7 254 46.9
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 6.1e-59 231.9 259 45.6
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 3.9e-58 229.2 253 44.3
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 8.7e-58 228.0 194 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 3.1e-55 219.5 200 55.5
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 4.8e-48 195.7 111 82.0
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 4.8e-48 195.7 111 82.0
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 3.1e-39 166.4 91 91.2
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 2.7e-35 153.3 90 78.9
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.0e-34 151.4 94 75.5
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.0e-34 149.8 90 74.4
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 3.3e-33 146.4 94 72.3
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 3.1e-31 139.8 93 72.0
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 5.3e-31 139.0 95 70.5
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 1.3e-29 134.4 95 70.5
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 5.5e-28 129.0 92 66.3
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 1.0e-26 124.8 72 79.2
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.8e-26 124.0 84 70.2
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.2e-24 117.1 75 73.3
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.9e-21 106.7 51 92.2
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.1e-20 104.8 51 86.3
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 5.5e-20 102.4 97 51.5
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 9.5e-20 101.7 57 77.2
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 1.2e-19 101.3 112 46.4
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 1.4e-18 97.8 65 67.7
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 6.3e-16 89.0 65 69.2
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.9e-13 80.1 38 86.8
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.3e-12 76.3 57 59.6
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 5.6e-12 75.9 60 60.0
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 8.0e-11 72.0 35 77.1
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 1.2e-09 68.2 53 60.4
Haze_05939 Corylus avellana HOM05D005284 ORTHO05D006609 7.0e-07 58.9 42 66.7
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 1.6e-06 57.8 29 75.9
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 1.6e-06 57.8 29 75.9


User provided reference genes

Program Settings