Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04215 Davidia involucrata HOM05D004059 ORTHO05D000135 2.3e-157 558.9 292 100.0
Dinv05939 Davidia involucrata HOM05D000203 ORTHO05D000135 4.3e-39 166.0 115 80.0
Dinv04213 Davidia involucrata HOM05D000203 ORTHO05D000135 9.6e-31 138.3 108 75.9
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 1.2e-17 94.7 65 73.8
CSS0003764 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 2.4e-13 80.5 67 59.7
GSVIVG01015189001 Vitis vinifera HOM05D004059 ORTHO05D004591 6.9e-13 79.0 68 58.8
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 1.2e-12 78.2 65 63.1
Cfa003070 Carpinus fangiana HOM05D004059 ORTHO05D004591 1.5e-12 77.8 66 57.6
Hma1.2p1_0672F.1_g201130 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 2.0e-12 77.4 152 38.8
vmacro06298 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 2.0e-12 77.4 71 57.7
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 2.6e-12 77.0 76 52.6
Hma1.2p1_1838F.1_g304870 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 4.5e-12 76.3 68 61.8
Lj4C294T9 Lonicera japonica HOM05D004059 ORTHO05D004591 7.6e-12 75.5 67 50.7
Duzib187G0197 Durio zibethinus HOM05D004059 ORTHO05D004591 1.0e-11 75.1 66 56.1
Lj4C294G8 Lonicera japonica HOM05D004059 ORTHO05D004591 1.3e-11 74.7 67 50.7
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 2.2e-11 73.9 63 57.1
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 2.9e-11 73.6 66 56.1
QL02p062365 Quercus lobata HOM05D004059 ORTHO05D004591 2.9e-11 73.6 67 58.2
Nitab4.5_0002824g0140 Nicotiana tabacum HOM05D004059 ORTHO05D004591 6.5e-11 72.4 74 56.8
DCAR_031333 Daucus carota HOM05D004059 ORTHO05D004591 8.5e-11 72.0 78 46.2
Potri.006G148800 Populus trichocarpa HOM05D004059 ORTHO05D004591 1.4e-10 71.2 66 62.1
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 3.2e-10 70.1 66 51.5
Actinidia38451 Actinidia chinensis HOM05D004059 ORTHO05D004591 7.2e-10 68.9 66 56.1
TWI34G0199 Tripterygium wilfordii HOM05D004059 ORTHO05D004591 7.2e-10 68.9 68 50.0
Cpa.g.sc61.16 Carica papaya HOM05D004059 ORTHO05D004591 9.3e-10 68.6 64 48.4
Ciclev10007937m.g Citrus clementina HOM05D004059 ORTHO05D004591 9.3e-10 68.6 65 53.8
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 9.3e-10 68.6 57 56.1
Rhsim05G0018600 Rhododendron simsii HOM05D004059 ORTHO05D004591 9.3e-10 68.6 64 53.1
Thecc.03G043300 Theobroma cacao HOM05D000203 ORTHO05D000135 1.2e-09 68.2 79 44.3
AUR62029052 Chenopodium quinoa HOM05D004059 ORTHO05D004591 2.1e-09 67.4 62 53.2
Duzib168G0233 Durio zibethinus HOM05D004059 ORTHO05D004591 2.7e-09 67.0 68 51.5
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 2.7e-09 67.0 66 51.5
Sabra06G0117700 Salix brachista HOM05D004059 ORTHO05D004591 2.7e-09 67.0 66 56.1
Gohir.A05G030300 Gossypium hirsutum HOM05D004059 ORTHO05D004591 4.6e-09 66.2 68 50.0
Gorai.009G031900 Gossypium raimondii HOM05D004059 ORTHO05D004591 4.6e-09 66.2 68 50.0
TAR285G0004 Trochodendron aralioides HOM05D000203 ORTHO05D000135 6.1e-09 65.9 76 46.1
Duzib084G1411 Durio zibethinus HOM05D000203 ORTHO05D000135 7.9e-09 65.5 80 46.2
Oeu017604.1 Olea europaea HOM05D004059 ORTHO05D004591 1.0e-08 65.1 62 54.8
AUR62033947 Chenopodium quinoa HOM05D004059 ORTHO05D004591 1.3e-08 64.7 66 53.0
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.3e-08 64.7 73 46.6
SalBow6G2791 Salvia bowleyana HOM05D000203 ORTHO05D000135 1.3e-08 64.7 79 44.3
VMungo1309G0851 Vigna mungo HOM05D004059 ORTHO05D004591 1.3e-08 64.7 64 51.6
Gohir.A07G011900 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.8e-08 64.3 64 51.6
Gohir.D06G071950 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.8e-08 64.3 66 45.5
Gohir.D05G031700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 2.3e-08 63.9 68 48.5
Gorai.001G012400 Gossypium raimondii HOM05D004059 ORTHO05D004591 2.3e-08 63.9 64 51.6
HanXRQChr03g0060341 Helianthus annuus HOM05D004059 ORTHO05D004591 3.0e-08 63.5 65 44.6
Manes.16G101000 Manihot esculenta HOM05D004059 ORTHO05D004591 3.0e-08 63.5 62 56.5
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 3.9e-08 63.2 73 45.2
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 5.1e-08 62.8 59 52.5
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 5.1e-08 62.8 59 52.5
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 5.1e-08 62.8 70 52.9
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 5.1e-08 62.8 70 52.9
TAR636G3314 Trochodendron aralioides HOM05D004059 ORTHO05D004591 5.1e-08 62.8 70 48.6
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 6.7e-08 62.4 69 55.1
RcHm_v2.0_Chr2g0093571 Rosa chinensis HOM05D004059 ORTHO05D004591 6.7e-08 62.4 71 50.7
Sopen01g049030 Solanum pennellii HOM05D000203 ORTHO05D000135 6.7e-08 62.4 83 41.0
Aqoxy7G04020 Aquilegia oxysepala HOM05D004059 ORTHO05D004591 8.7e-08 62.0 66 45.5
Gohir.D07G011700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 8.7e-08 62.0 64 51.6
Peaxi162Scf00498g00056 Petunia axillaris HOM05D004059 ORTHO05D004591 8.7e-08 62.0 67 52.2
Peaxi162Scf00498g00537 Petunia axillaris HOM05D000597 ORTHO05D004591 8.7e-08 62.0 67 52.2
Sed0008144 Sechium edule HOM05D004059 ORTHO05D004591 8.7e-08 62.0 63 42.9
TAR624G0558 Trochodendron aralioides HOM05D004059 ORTHO05D004591 8.7e-08 62.0 65 52.3
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 1.1e-07 61.6 60 51.7
EL10Ac8g19192 Beta vulgaris HOM05D004059 ORTHO05D004591 1.1e-07 61.6 62 50.0
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.1e-07 61.6 70 51.4
Hma1.2p1_1175F.1_g264090 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 1.1e-07 61.6 165 32.7
Nitab4.5_0003151g0030 Nicotiana tabacum HOM05D000203 ORTHO05D000135 1.1e-07 61.6 98 38.8
Phvul.009G231600 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 1.1e-07 61.6 64 50.0
Prupe.2G120200 Prunus persica HOM05D000203 ORTHO05D000135 1.1e-07 61.6 91 29.7
Cfa000969 Carpinus fangiana HOM05D000203 ORTHO05D000135 1.5e-07 61.2 171 28.1
Eucgr.C03476 Eucalyptus grandis HOM05D004059 ORTHO05D004591 1.5e-07 61.2 59 47.5
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 1.5e-07 61.2 59 50.8
Haze_03441 Corylus avellana HOM05D000203 ORTHO05D000135 1.9e-07 60.8 111 32.4
FAN26G1668 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.9e-07 60.8 70 51.4
FAN26G3139 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.9e-07 60.8 70 51.4
Solyc01g106700.3 Solanum lycopersicum HOM05D000203 ORTHO05D000135 1.9e-07 60.8 83 39.8
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 2.5e-07 60.5 60 50.0
Migut.N01120 Erythranthe guttata HOM05D000203 ORTHO05D000135 2.5e-07 60.5 96 33.3
Peaxi162Scf00498g00042 Petunia axillaris HOM05D004059 ORTHO05D004591 2.5e-07 60.5 67 50.7
CiPaw.03G214200 Carya illinoinensis HOM05D004059 ORTHO05D004591 3.3e-07 60.1 67 46.3
Glyma.15G170500 Glycine max HOM05D004059 ORTHO05D004591 3.3e-07 60.1 68 47.1
Lj4g0028074 Lotus japonicus HOM05D004059 ORTHO05D004591 3.3e-07 60.1 66 47.0
Nn6g35501 Nelumbo nucifera HOM05D004059 ORTHO05D004591 4.3e-07 59.7 65 43.1
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 4.3e-07 59.7 71 47.9
CiPaw.04G148500 Carya illinoinensis HOM05D004059 ORTHO05D004591 5.7e-07 59.3 61 49.2
Ca_11008_v3 Cicer arietinum L. HOM05D000203 ORTHO05D000135 5.7e-07 59.3 142 32.4
Glyma.17G054000 Glycine max HOM05D004059 ORTHO05D004591 5.7e-07 59.3 64 45.3
Gorai.010G083900 Gossypium raimondii HOM05D004059 ORTHO05D004591 5.7e-07 59.3 66 42.4
Aa31LG3G12850 Aethionema arabicum HOM05D004059 ORTHO05D004591 7.4e-07 58.9 61 50.8
CAN.G338.45 Capsicum annuum HOM05D000203 ORTHO05D000135 7.4e-07 58.9 74 41.9
Lsat_1_v5_gn_7_36701 Lactuca sativa HOM05D004059 ORTHO05D004591 7.4e-07 58.9 70 44.3
Manes.03G034700 Manihot esculenta HOM05D004059 ORTHO05D004591 7.4e-07 58.9 76 46.1
Oeu026465.1 Olea europaea HOM05D000203 ORTHO05D000135 9.7e-07 58.5 83 39.8
CARHR270700 Cardamine hirsuta HOM05D004059 ORTHO05D004591 1.6e-06 57.8 59 52.5
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 1.6e-06 57.8 74 47.3
PGSC0003DMG400005119 Solanum tuberosum HOM05D000203 ORTHO05D000135 1.6e-06 57.8 83 38.6
Haze_02883 Corylus avellana HOM05D000025 ORTHO05D000135 2.2e-06 57.4 84 38.1
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 2.2e-06 57.4 67 50.7
Psat4g131680 Pisum sativum HOM05D000203 ORTHO05D000135 2.2e-06 57.4 145 31.0
Potri.017G040700 Populus trichocarpa HOM05D000203 ORTHO05D000135 2.2e-06 57.4 171 27.5
Sabra10G0051300 Salix brachista HOM05D000203 ORTHO05D000135 2.2e-06 57.4 85 40.0
CAN.G52.7 Capsicum annuum HOM05D004059 ORTHO05D004591 2.8e-06 57.0 62 46.8
CAN.G744.6 Capsicum annuum HOM05D000203 ORTHO05D000135 2.8e-06 57.0 121 30.6
Lsat_1_v5_gn_1_65761 Lactuca sativa HOM05D000203 ORTHO05D000135 2.8e-06 57.0 78 37.2
vmacro22262 Vaccinium macrocarpon HOM05D000203 ORTHO05D000135 2.8e-06 57.0 84 38.1
Cpa.g.sc20.85 Carica papaya HOM05D000203 ORTHO05D000135 3.7e-06 56.6 77 40.3
Lsat_1_v5_gn_1_65780 Lactuca sativa HOM05D000203 ORTHO05D000135 4.8e-06 56.2 82 41.5
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 4.8e-06 56.2 56 50.0
FAN28G1400 Fragaria x ananassa HOM05D004059 ORTHO05D004591 6.3e-06 55.8 61 52.5
MD02G1221000 Malus domestica HOM05D000203 ORTHO05D000135 6.3e-06 55.8 95 30.5
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 8.2e-06 55.5 59 47.5
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 8.2e-06 55.5 59 47.5
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 8.2e-06 55.5 59 47.5
Ca_20977_v3 Cicer arietinum L. HOM05D000203 ORTHO05D000135 8.2e-06 55.5 147 32.0
Glyma.09G064200 Glycine max HOM05D004059 ORTHO05D004591 8.2e-06 55.5 68 44.1
HanXRQChr09g0238101 Helianthus annuus HOM05D004059 ORTHO05D004591 8.2e-06 55.5 68 41.2
Lsat_1_v5_gn_1_65800 Lactuca sativa HOM05D000203 ORTHO05D000135 8.2e-06 55.5 84 36.9
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 8.2e-06 55.5 67 52.2
Medtr2g105290 Medicago truncatula HOM05D000203 ORTHO05D000135 8.2e-06 55.5 144 31.9


User provided reference genes

Program Settings