Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 7.1e-181 637.1 314 100.0
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.8e-139 499.6 290 85.5
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 1.1e-138 496.9 296 83.8
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 6.7e-131 471.1 297 80.8
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 2.1e-124 449.5 292 76.7
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 8.0e-124 447.6 292 76.0
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 2.3e-123 446.0 292 76.4
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 4.4e-122 441.8 311 72.7
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 4.4e-122 441.8 274 80.3
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.7e-121 439.9 309 72.2
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.6e-119 433.3 309 72.8
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 2.2e-118 429.5 298 72.1
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 2.2e-118 429.5 283 76.0
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 4.2e-117 425.2 288 72.9
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 5.5e-117 424.9 300 72.3
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 1.2e-114 417.2 304 70.7
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 1.5e-114 416.8 282 73.4
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 3.4e-114 415.6 295 71.5
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 4.4e-114 415.2 288 71.9
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 4.4e-114 415.2 288 71.9
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 7.5e-114 414.5 292 71.2
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 7.5e-114 414.5 296 71.3
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-113 413.7 301 70.8
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 3.7e-113 412.1 308 69.5
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 6.3e-113 411.4 286 72.0
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.1e-112 410.6 292 72.3
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.4e-112 410.2 293 69.6
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.4e-112 410.2 288 71.2
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 9.1e-112 407.5 303 68.6
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 9.1e-112 407.5 293 71.0
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 3.5e-111 405.6 269 76.6
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.0e-110 404.1 323 65.9
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 1.7e-110 403.3 269 77.7
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 1.7e-110 403.3 269 77.7
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 1.7e-110 403.3 269 77.7
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 5.0e-110 401.7 299 69.6
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 2.5e-109 399.4 333 63.4
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 6.1e-108 394.8 282 72.7
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 8.0e-108 394.4 295 67.8
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 2.3e-107 392.9 291 67.0
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.0e-107 392.5 291 67.4
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.2e-107 391.7 343 61.5
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 2.6e-106 389.4 296 70.3
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 5.7e-106 388.3 291 67.4
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.7e-105 386.7 273 73.3
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 2.8e-105 386.0 299 66.2
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 9.1e-104 380.9 305 66.2
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 9.1e-104 380.9 290 66.9
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 1.2e-103 380.6 300 65.0
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.6e-103 380.2 263 70.3
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.6e-103 380.2 290 65.5
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 4.5e-103 378.6 312 61.2
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 1.0e-102 377.5 296 65.5
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 1.3e-102 377.1 275 68.4
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 1.7e-102 376.7 296 65.5
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 2.9e-102 375.9 288 67.7
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 3.8e-102 375.6 296 65.2
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 3.8e-102 375.6 297 65.7
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 5.0e-102 375.2 287 67.6
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 6.6e-102 374.8 295 65.1
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 9.5e-101 370.9 285 64.2
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 9.5e-101 370.9 281 65.8
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 2.1e-100 369.8 299 63.9
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 2.8e-100 369.4 282 67.0
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.8e-100 369.4 334 61.7
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 1.0e-99 367.5 292 65.4
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 1.0e-99 367.5 292 65.4
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 1.0e-99 367.5 292 65.4
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.0e-99 367.5 292 65.4
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.0e-99 367.5 298 62.8
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 3.0e-99 365.9 292 65.1
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 3.0e-99 365.9 315 60.0
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 4.0e-99 365.5 298 64.4
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 4.0e-99 365.5 290 64.5
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 6.8e-99 364.8 299 63.2
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 2.0e-98 363.2 286 63.3
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 2.0e-98 363.2 288 67.4
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 2.2e-97 359.8 299 63.5
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 8.3e-97 357.8 263 71.5
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 5.4e-96 355.1 273 64.1
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 1.2e-95 354.0 352 54.8
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 7.8e-95 351.3 292 61.0
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 1.0e-94 350.9 291 61.5
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 1.1e-93 347.4 237 69.2
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 4.3e-93 345.5 273 63.0
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 7.3e-93 344.7 221 75.1
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 9.5e-93 344.4 295 64.4
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 3.1e-91 339.3 263 66.2
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 3.1e-91 339.3 279 63.8
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 6.8e-91 338.2 289 61.2
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 6.8e-91 338.2 294 60.2
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 8.9e-91 337.8 280 64.6
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 1.2e-90 337.4 294 62.2
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 2.0e-90 336.7 233 74.2
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 2.0e-90 336.7 227 76.2
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 9.2e-88 327.8 291 59.8
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 6.0e-87 325.1 268 60.4
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 2.3e-86 323.2 308 57.5
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 6.6e-86 321.6 282 60.6
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 1.1e-83 314.3 264 61.4
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.6e-82 309.7 453 43.7
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 9.5e-77 291.2 284 53.9
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 4.7e-76 288.9 282 57.4
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 8.1e-76 288.1 228 64.0
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.2e-73 280.0 213 68.1
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 1.1e-72 277.7 249 60.6
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 9.2e-72 274.6 241 54.4
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 4.4e-66 255.8 212 60.4
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 1.3e-65 254.2 195 64.6
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 8.7e-62 241.5 233 51.5
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 9.6e-61 238.0 173 69.9
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 1.3e-60 237.7 161 71.4
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.1e-59 234.6 247 48.2
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 3.9e-54 216.1 235 47.7
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 9.0e-51 204.9 169 59.2
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.4e-48 196.8 217 54.8
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 3.0e-46 189.9 117 76.1
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 6.7e-46 188.7 150 61.3
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 2.4e-43 180.3 128 71.9
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.3e-41 174.5 151 54.3
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.2e-39 167.9 121 72.7
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 2.8e-36 156.8 85 82.4
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 1.8e-35 154.1 231 39.8
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.6e-34 150.2 124 62.9
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 6.5e-33 145.6 96 69.8
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 5.5e-32 142.5 76 82.9
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 9.7e-29 131.7 114 59.6
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.2e-28 130.6 98 66.3
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.2e-28 130.6 98 66.3
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 2.8e-28 130.2 86 73.3
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 4.2e-24 116.3 67 82.1
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 3.0e-22 110.2 132 46.2
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 1.5e-21 107.8 74 68.9
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 1.7e-20 104.4 80 67.5
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 3.4e-18 96.7 63 66.7
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 4.2e-16 89.7 71 63.4
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 4.2e-16 89.7 84 58.3
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 7.9e-15 85.5 44 84.1
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 6.7e-14 82.4 42 83.3
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 8.8e-14 82.0 73 54.8
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 2.0e-13 80.9 72 56.9
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 4.8e-12 76.3 46 73.9
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.2e-08 63.5 189 28.6
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 5.5e-08 62.8 37 78.4
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 5.5e-08 62.8 36 72.2
C03p13750 Brassica napus HOM05D005444 ORTHO05D042479 1.4e-06 58.2 41 63.4
BolC3t13825H Brassica oleracea HOM05D005444 ORTHO05D042479 1.4e-06 58.2 41 63.4


User provided reference genes

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