Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04174 Davidia involucrata HOM05D000038 ORTHO05D003992 2.3e-52 208.8 115 100.0
Dinv41677 Davidia involucrata HOM05D000038 ORTHO05D003992 2.5e-22 109.0 134 49.3
Rhsim06G0100200 Rhododendron simsii HOM05D000038 ORTHO05D003992 9.3e-22 107.1 134 47.0
Eucgr.F04152 Eucalyptus grandis HOM05D000038 ORTHO05D003992 6.1e-21 104.4 132 47.0
Manes.02G189400 Manihot esculenta HOM05D000038 ORTHO05D003992 6.1e-21 104.4 135 45.9
Dinv38040 Davidia involucrata HOM05D000013 ORTHO05D003992 1.0e-20 103.6 134 47.0
Hma1.2p1_1102F.1_g257220 Hydrangea macrophylla HOM05D000038 ORTHO05D003992 1.0e-20 103.6 132 47.0
CSS0036562 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D003992 1.3e-20 103.2 134 47.0
Duzib116G0598 Durio zibethinus HOM05D000038 ORTHO05D003992 2.3e-20 102.4 134 45.5
TAR628G0712 Trochodendron aralioides HOM05D000038 ORTHO05D003992 2.3e-20 102.4 134 45.5
Lj4P518T10 Lonicera japonica HOM05D000038 ORTHO05D003992 1.1e-19 100.1 133 45.1
Nn8g40937 Nelumbo nucifera HOM05D000038 ORTHO05D003992 1.1e-19 100.1 140 42.9
CSS0028278 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D003992 2.5e-19 99.0 135 45.9
GSVIVG01036817001 Vitis vinifera HOM05D000038 ORTHO05D003992 2.5e-19 99.0 134 44.8
Manes.18G098200 Manihot esculenta HOM05D000038 ORTHO05D003992 3.3e-19 98.6 135 44.4
CANSAT25G1886 Cannabis sativa HOM05D000038 ORTHO05D003992 4.3e-19 98.2 133 45.1
Dinv41676 Davidia involucrata HOM05D000038 ORTHO05D003992 9.7e-19 97.1 133 45.1
Gorai.003G126000 Gossypium raimondii HOM05D000038 ORTHO05D003992 1.3e-18 96.7 133 43.6
Thecc.08G199900 Theobroma cacao HOM05D000038 ORTHO05D003992 1.3e-18 96.7 130 43.8
Ciclev10025750m.g Citrus clementina HOM05D000038 ORTHO05D003992 1.6e-18 96.3 135 45.2
Thecc.08G199800 Theobroma cacao HOM05D000038 ORTHO05D003992 1.6e-18 96.3 133 43.6
FvH4_2g12390 Fragaria vesca HOM05D000038 ORTHO05D003992 2.2e-18 95.9 133 42.9
FAN20G0659 Fragaria x ananassa HOM05D000038 ORTHO05D003992 2.2e-18 95.9 133 42.9
FAN24G0810 Fragaria x ananassa HOM05D000038 ORTHO05D003992 2.2e-18 95.9 133 42.9
FAN27G0433 Fragaria x ananassa HOM05D000038 ORTHO05D003992 2.2e-18 95.9 133 42.9
Gohir.A03G047500 Gossypium hirsutum HOM05D000038 ORTHO05D003992 2.2e-18 95.9 133 43.6
Gohir.D03G119600 Gossypium hirsutum HOM05D000038 ORTHO05D003992 2.8e-18 95.5 133 42.9
Prupe.8G051900 Prunus persica HOM05D000038 ORTHO05D003992 2.8e-18 95.5 140 42.1
Aqoxy5G02606 Aquilegia oxysepala HOM05D000038 ORTHO05D003992 8.2e-18 94.0 134 42.5
PGR102G3316 Punica granatum HOM05D000038 ORTHO05D003992 8.2e-18 94.0 133 41.4
MD05G1039400 Malus domestica HOM05D000038 ORTHO05D003992 1.1e-17 93.6 133 42.9
HanXRQChr04g0111601 Helianthus annuus HOM05D000038 ORTHO05D003992 1.4e-17 93.2 135 43.0
Atru.chr13.1864 Acer truncatum HOM05D000038 ORTHO05D003992 5.3e-17 91.3 145 40.0
Duzib211G0694 Durio zibethinus HOM05D000038 ORTHO05D003992 1.2e-16 90.1 134 41.8
RcHm_v2.0_Chr6g0272421 Rosa chinensis HOM05D000038 ORTHO05D003992 1.2e-16 90.1 133 40.6
ECA247G3329 Erigeron canadensis HOM05D000038 ORTHO05D003992 2.0e-16 89.4 133 40.6
Lsat_1_v5_gn_1_6641 Lactuca sativa HOM05D000038 ORTHO05D003992 3.4e-16 88.6 135 41.5
Ciclev10003606m.g Citrus clementina HOM05D000038 ORTHO05D003992 4.5e-16 88.2 138 40.6
QL02p034403 Quercus lobata HOM05D000038 ORTHO05D003992 4.5e-16 88.2 130 40.8
QL12p025716 Quercus lobata HOM05D000038 ORTHO05D003992 4.5e-16 88.2 132 40.2
QL02p034442 Quercus lobata HOM05D000038 ORTHO05D003992 5.9e-16 87.8 141 39.0
MD10G1044900 Malus domestica HOM05D000038 ORTHO05D003992 1.0e-15 87.0 138 39.1
TAR381G0198 Trochodendron aralioides HOM05D000038 ORTHO05D003992 1.0e-15 87.0 134 39.6
CAN.G571.3 Capsicum annuum HOM05D000038 ORTHO05D003992 1.3e-15 86.7 131 38.9
Cpa.g.sc66.110 Carica papaya HOM05D000038 ORTHO05D003992 1.7e-15 86.3 132 38.6
CSS0041724 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D003992 2.2e-15 85.9 136 38.2
Rhsim11G0063500 Rhododendron simsii HOM05D000038 ORTHO05D003992 2.2e-15 85.9 134 38.8
AUR62004671 Chenopodium quinoa HOM05D000038 ORTHO05D003992 2.9e-15 85.5 133 38.3
AUR62023590 Chenopodium quinoa HOM05D000038 ORTHO05D003992 2.9e-15 85.5 133 38.3
Lalb_Chr01g0009931 Lupinus albus HOM05D000038 ORTHO05D003992 2.9e-15 85.5 133 39.1
PGSC0003DMG400030209 Solanum tuberosum HOM05D000038 ORTHO05D003992 2.9e-15 85.5 136 38.2
Solyc11g013880.1 Solanum lycopersicum HOM05D000038 ORTHO05D003992 6.5e-15 84.3 131 38.2
Sopen11g008800 Solanum pennellii HOM05D000038 ORTHO05D003992 6.5e-15 84.3 131 38.2
Nitab4.5_0000923g0140 Nicotiana tabacum HOM05D000038 ORTHO05D003992 8.5e-15 84.0 131 38.9
Nitab4.5_0006035g0010 Nicotiana tabacum HOM05D000038 ORTHO05D003992 8.5e-15 84.0 131 38.9
Sc01g0001640 Simmondsia chinensis HOM05D000038 ORTHO05D003992 1.1e-14 83.6 133 36.1
MSTRG.1495 Avicennia marina HOM05D000038 ORTHO05D003992 1.4e-14 83.2 128 39.8
Rhsim11G0063600 Rhododendron simsii HOM05D000038 ORTHO05D003992 1.9e-14 82.8 134 40.3
Rhsim11G0063700 Rhododendron simsii HOM05D000038 ORTHO05D003992 1.9e-14 82.8 132 39.4
MD05G1039500 Malus domestica HOM05D000038 ORTHO05D003992 2.5e-14 82.4 135 40.0
CiPaw.15G005900 Carya illinoinensis HOM05D000038 ORTHO05D003992 3.2e-14 82.0 132 37.9
Aqoxy5G02594 Aquilegia oxysepala HOM05D000038 ORTHO05D003992 4.2e-14 81.6 133 37.6
Nitab4.5_0003302g0070 Nicotiana tabacum HOM05D000038 ORTHO05D003992 7.2e-14 80.9 131 37.4
Thecc.08G199600 Theobroma cacao HOM05D000038 ORTHO05D003992 9.4e-14 80.5 134 37.3
TWI34G0818 Tripterygium wilfordii HOM05D000038 ORTHO05D003992 9.4e-14 80.5 130 37.7
Duzib116G0534 Durio zibethinus HOM05D000038 ORTHO05D003992 1.2e-13 80.1 134 36.6
Lj4P518T15 Lonicera japonica HOM05D000038 ORTHO05D003992 1.2e-13 80.1 132 36.4
CiPaw.15G006000 Carya illinoinensis HOM05D000038 ORTHO05D003992 1.6e-13 79.7 132 37.1
MBI09_g01925_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D003992 2.1e-13 79.3 134 37.3
Medtr6g043510 Medicago truncatula HOM05D000038 ORTHO05D003992 2.1e-13 79.3 134 40.3
Cfa018213 Carpinus fangiana HOM05D000038 ORTHO05D003992 2.7e-13 79.0 132 37.9
Manes.13G148400 Manihot esculenta HOM05D000038 ORTHO05D003992 2.7e-13 79.0 139 36.0
Peaxi162Scf00228g00036 Petunia axillaris HOM05D000038 ORTHO05D003992 2.7e-13 79.0 136 36.0
Os03g0838100 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D003992 4.6e-13 78.2 134 35.8
EL10Ac1g00058 Beta vulgaris HOM05D000038 ORTHO05D003992 6.1e-13 77.8 133 36.1
Potri.019G086400 Populus trichocarpa HOM05D000038 ORTHO05D003992 6.1e-13 77.8 137 37.2
SGA_v2.0_scaffold24G10524 Striga asiatica HOM05D000038 ORTHO05D003992 6.1e-13 77.8 132 35.6
Ah.16g109760 Amaranthus hybridus HOM05D000038 ORTHO05D003992 1.4e-12 76.6 133 36.1
DCAR_014271 Daucus carota HOM05D000038 ORTHO05D003992 1.4e-12 76.6 139 36.0
Gohir.D02G066800 Gossypium hirsutum HOM05D000038 ORTHO05D003992 1.4e-12 76.6 132 34.8
Gorai.005G075700 Gossypium raimondii HOM05D000038 ORTHO05D003992 1.4e-12 76.6 132 34.8
MSTRG.25428 Avicennia marina HOM05D000038 ORTHO05D003992 2.3e-12 75.9 132 37.9
Glyma.20G173600 Glycine max HOM05D000038 ORTHO05D003992 3.9e-12 75.1 135 36.3
Hma1.2p1_1102F.1_g257240 Hydrangea macrophylla HOM05D000038 ORTHO05D003992 3.9e-12 75.1 136 35.3
Potri.013G115700 Populus trichocarpa HOM05D000038 ORTHO05D003992 5.1e-12 74.7 134 34.3
Phvul.004G085800 Phaseolus vulgaris HOM05D000038 ORTHO05D003992 6.7e-12 74.3 133 34.6
HPP92_025216 Vanilla planifolia HOM05D000038 ORTHO05D003992 6.7e-12 74.3 134 35.8
VMungo0464G0004 Vigna mungo HOM05D000038 ORTHO05D003992 6.7e-12 74.3 133 34.6
Zm00001eb063900 Zea mays HOM05D000038 ORTHO05D003992 6.7e-12 74.3 133 34.6
Ca_26648_v3 Cicer arietinum L. HOM05D000038 ORTHO05D003992 1.1e-11 73.6 136 36.8
Haze_17893 Corylus avellana HOM05D000038 ORTHO05D003992 1.5e-11 73.2 132 36.4
Glyma.16G157400 Glycine max HOM05D000038 ORTHO05D003992 2.0e-11 72.8 130 34.6
Gohir.A02G061300 Gossypium hirsutum HOM05D000038 ORTHO05D003992 3.3e-11 72.0 135 31.1
Lj5g0016167 Lotus japonicus HOM05D000038 ORTHO05D003992 3.3e-11 72.0 135 34.8
Glyma.02G075600 Glycine max HOM05D000038 ORTHO05D003992 4.3e-11 71.6 132 37.1
CiPaw.16G005200 Carya illinoinensis HOM05D000038 ORTHO05D003992 7.4e-11 70.9 137 33.6
Psat0ss3101g0040 Pisum sativum HOM05D000038 ORTHO05D003992 7.4e-11 70.9 137 37.2
Gohir.D02G066700 Gossypium hirsutum HOM05D000038 ORTHO05D003992 1.7e-10 69.7 134 32.1
TWI34G0484 Tripterygium wilfordii HOM05D000038 ORTHO05D003992 2.2e-10 69.3 129 37.2
Lj2g0020591 Lotus japonicus HOM05D000038 ORTHO05D003992 2.8e-10 68.9 130 36.2
Gorai.005G075600 Gossypium raimondii HOM05D000038 ORTHO05D003992 3.7e-10 68.6 134 31.3
Eucgr.F04146 Eucalyptus grandis HOM05D000038 ORTHO05D003992 6.3e-10 67.8 137 32.8
Thhalv10028444m.g Eutrema salsugineum HOM05D000038 ORTHO05D003992 6.3e-10 67.8 133 33.8
SalBow7G4436 Salvia bowleyana HOM05D000038 ORTHO05D003992 6.3e-10 67.8 138 32.6
Actinidia23313 Actinidia chinensis HOM05D000038 ORTHO05D003992 8.2e-10 67.4 43 74.4
Aa31LG9G14950 Aethionema arabicum HOM05D000038 ORTHO05D003992 1.1e-09 67.0 134 32.8
Sc23g0001070 Simmondsia chinensis HOM05D000038 ORTHO05D003992 1.1e-09 67.0 131 34.4
COL.COLO4_35753 Corchorus olitorius HOM05D000038 ORTHO05D003992 1.8e-09 66.2 56 58.9
Sabra13G0098000 Salix brachista HOM05D000038 ORTHO05D003992 1.8e-09 66.2 135 33.3
Sp6g07970 Schrenkiella parvula HOM05D000038 ORTHO05D003992 1.8e-09 66.2 134 32.8
Haze_17892 Corylus avellana HOM05D000038 ORTHO05D003992 2.4e-09 65.9 141 30.5
PSO017G3394 Papaver somniferum HOM05D000038 ORTHO05D003992 3.1e-09 65.5 135 34.8
THA.LOC104816209 Tarenaya hassleriana HOM05D000038 ORTHO05D003992 6.9e-09 64.3 132 32.6
Potri.019G086200 Populus trichocarpa HOM05D000038 ORTHO05D003992 9.1e-09 63.9 134 34.3
Cfa018214 Carpinus fangiana HOM05D000038 ORTHO05D003992 1.2e-08 63.5 138 29.7
Migut.C01210 Erythranthe guttata HOM05D000038 ORTHO05D003992 1.2e-08 63.5 132 32.6
PSO063G3926 Papaver somniferum HOM05D000038 ORTHO05D003992 1.5e-08 63.2 135 34.1
PSO063G2177 Papaver somniferum HOM05D000038 ORTHO05D003992 2.6e-08 62.4 136 30.1
Lj4P510T15 Lonicera japonica HOM05D000038 ORTHO05D028373 3.4e-08 62.0 139 30.9
Ca_10631_v3 Cicer arietinum L. HOM05D000038 ORTHO05D003992 5.9e-08 61.2 138 31.2
Cc00_g12500 Coffea canephora HOM05D000038 ORTHO05D003992 5.9e-08 61.2 134 32.1
Thhalv10006801m.g Eutrema salsugineum HOM05D000038 ORTHO05D003992 5.9e-08 61.2 130 31.5
CSS0008718 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D033875 1.7e-07 59.7 37 75.7
TPR.G15345 Trifolium pratense HOM05D000038 ORTHO05D003992 2.9e-07 58.9 143 33.6
Gorai.006G131200 Gossypium raimondii HOM05D000038 ORTHO05D003992 5.0e-07 58.2 43 65.1
BcaB07g33135 Brassica carinata HOM05D000038 ORTHO05D003992 6.5e-07 57.8 130 30.0
arahy.Tifrunner.gnm1.ann1.CNY52L Arachis hypogaea HOM05D000038 ORTHO05D003992 1.1e-06 57.0 135 31.9
arahy.Tifrunner.gnm1.ann1.QZI8B0 Arachis hypogaea HOM05D000038 ORTHO05D003992 1.1e-06 57.0 135 31.9
PSO017G7015 Papaver somniferum HOM05D000038 ORTHO05D003992 1.4e-06 56.6 132 31.1
BcaC08g43788 Brassica carinata HOM05D000038 ORTHO05D003992 2.5e-06 55.8 130 31.5
A09p32150 Brassica napus HOM05D000038 ORTHO05D003992 2.5e-06 55.8 130 31.5
BolC6t36298H Brassica oleracea HOM05D000038 ORTHO05D003992 2.5e-06 55.8 130 31.5
BraA09t38761Z Brassica rapa HOM05D000038 ORTHO05D003992 2.5e-06 55.8 130 31.5
Sp1g29520 Schrenkiella parvula HOM05D000038 ORTHO05D003992 2.5e-06 55.8 130 33.1
Gohir.D09G113566 Gossypium hirsutum HOM05D000038 ORTHO05D003992 3.2e-06 55.5 43 62.8
Medtr6g043790 Medicago truncatula HOM05D000038 ORTHO05D003992 3.2e-06 55.5 135 31.9
Carub.0001s3245 Capsella rubella HOM05D000038 ORTHO05D003992 4.2e-06 55.1 129 32.6
ATR0584G238 Amborella trichopoda HOM05D000038 ORTHO05D003992 5.5e-06 54.7 134 30.6
C06p11690 Brassica napus HOM05D000038 ORTHO05D003992 5.5e-06 54.7 130 30.8
AUR62023591 Chenopodium quinoa HOM05D000038 ORTHO05D003992 5.5e-06 54.7 133 30.1
THA.LOC104813095 Tarenaya hassleriana HOM05D000038 ORTHO05D003992 5.5e-06 54.7 125 30.4
BcaB04g17887 Brassica carinata HOM05D000038 ORTHO05D003992 7.2e-06 54.3 130 32.3


User provided reference genes

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