Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04076 Davidia involucrata HOM05D000870 ORTHO05D180535 1.3e-79 299.7 156 100.0
Dinv02980 Davidia involucrata HOM05D001335 ORTHO05D001184 1.7e-21 106.7 59 89.8
Actinidia34344 Actinidia chinensis HOM05D000870 ORTHO05D000715 2.6e-14 82.8 83 61.4
Hma1.2p1_0402F.1_g145051 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 2.6e-14 82.8 83 61.4
Hma1.2p1_1483F.1_g286260 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 2.6e-14 82.8 83 61.4
Dinv31409 Davidia involucrata HOM05D000870 ORTHO05D000715 3.3e-14 82.4 84 61.9
THA.LOC104824256 Tarenaya hassleriana HOM05D000870 ORTHO05D000715 7.4e-14 81.3 123 48.0
ClCG02G013450 Citrullus lanatus HOM05D000870 ORTHO05D000715 9.7e-14 80.9 87 58.6
Cc02_g08480 Coffea canephora HOM05D000870 ORTHO05D000715 1.3e-13 80.5 84 58.3
RhsimUnG0096800 Rhododendron simsii HOM05D000870 ORTHO05D000715 1.3e-13 80.5 90 56.7
Hma1.2p1_0207F.1_g087730 Hydrangea macrophylla HOM05D000870 ORTHO05D000715 1.7e-13 80.1 84 59.5
TAR633G0149 Trochodendron aralioides HOM05D000870 ORTHO05D000715 1.7e-13 80.1 83 60.2
Psat3g185840 Pisum sativum HOM05D000870 ORTHO05D000715 2.2e-13 79.7 84 58.3
Actinidia02982 Actinidia chinensis HOM05D000870 ORTHO05D000715 2.8e-13 79.3 84 58.3
Dinv25961 Davidia involucrata HOM05D000870 ORTHO05D000715 2.8e-13 79.3 83 60.2
Medtr7g022890 Medicago truncatula HOM05D000870 ORTHO05D000715 2.8e-13 79.3 83 59.0
GSVIVG01016640001 Vitis vinifera HOM05D000870 ORTHO05D000715 2.8e-13 79.3 83 55.4
CAN.G1339.7 Capsicum annuum HOM05D000870 ORTHO05D000715 4.8e-13 78.6 83 57.8
Peaxi162Scf00015g02216 Petunia axillaris HOM05D000870 ORTHO05D000715 4.8e-13 78.6 83 57.8
Solyc05g054730.3 Solanum lycopersicum HOM05D000870 ORTHO05D000715 4.8e-13 78.6 83 57.8
Sopen05g033200 Solanum pennellii HOM05D000870 ORTHO05D000715 4.8e-13 78.6 83 57.8
PGSC0003DMG400023516 Solanum tuberosum HOM05D000870 ORTHO05D000715 4.8e-13 78.6 83 57.8
Haze_16994 Corylus avellana HOM05D000870 ORTHO05D000715 6.3e-13 78.2 83 60.2
Sed0008473 Sechium edule HOM05D000870 ORTHO05D000715 6.3e-13 78.2 84 58.3
vmacro07142 Vaccinium macrocarpon HOM05D000870 ORTHO05D000715 6.3e-13 78.2 83 59.0
Lj1g0016343 Lotus japonicus HOM05D000870 ORTHO05D000715 1.1e-12 77.4 83 57.8
Phvul.008G015500 Phaseolus vulgaris HOM05D000870 ORTHO05D000715 1.1e-12 77.4 84 57.1
TAR636G0054 Trochodendron aralioides HOM05D000870 ORTHO05D000715 1.1e-12 77.4 84 57.1
VMungo1383G0651 Vigna mungo HOM05D000870 ORTHO05D000715 1.1e-12 77.4 84 57.1
CSS0026766 Camellia sinensis var. sinensis HOM05D000870 ORTHO05D000715 1.4e-12 77.0 83 57.8
CiPaw.01G281900 Carya illinoinensis HOM05D000870 ORTHO05D000715 1.4e-12 77.0 83 57.8
Duzib128G0225 Durio zibethinus HOM05D000870 ORTHO05D000715 1.4e-12 77.0 83 57.8
Lj8C90G13 Lonicera japonica HOM05D000870 ORTHO05D000715 1.4e-12 77.0 131 42.0
PGR142G3727 Punica granatum HOM05D000870 ORTHO05D000715 1.4e-12 77.0 84 57.1
Thecc.10G057800 Theobroma cacao HOM05D000870 ORTHO05D000715 1.4e-12 77.0 83 57.8
arahy.Tifrunner.gnm1.ann1.C1W7MD Arachis hypogaea HOM05D000870 ORTHO05D000715 1.8e-12 76.6 84 57.1
arahy.Tifrunner.gnm1.ann1.F3QZDX Arachis hypogaea HOM05D000870 ORTHO05D000715 1.8e-12 76.6 84 57.1
arahy.Tifrunner.gnm1.ann1.HJ8JHV Arachis hypogaea HOM05D000870 ORTHO05D000715 1.8e-12 76.6 84 57.1
arahy.Tifrunner.gnm1.ann1.J9LUB0 Arachis hypogaea HOM05D000870 ORTHO05D000715 1.8e-12 76.6 84 57.1
Ciclev10031759m.g Citrus clementina HOM05D000870 ORTHO05D000715 1.8e-12 76.6 83 57.8
MELO3C023828.2 Cucumis melo HOM05D000870 ORTHO05D000715 1.8e-12 76.6 128 43.0
Gohir.D10G219700 Gossypium hirsutum HOM05D000870 ORTHO05D000715 1.8e-12 76.6 83 57.8
Gorai.011G246400 Gossypium raimondii HOM05D000870 ORTHO05D000715 1.8e-12 76.6 83 57.8
TWI15G0914 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 1.8e-12 76.6 83 57.8
Ca_07178_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 2.4e-12 76.3 83 56.6
CsaV3_5G006700 Cucumis sativus L. HOM05D000870 ORTHO05D000715 2.4e-12 76.3 84 57.1
Glyma.18G286100 Glycine max HOM05D000870 ORTHO05D000715 2.4e-12 76.3 84 56.0
Gohir.A10G211500 Gossypium hirsutum HOM05D000870 ORTHO05D000715 2.4e-12 76.3 83 57.8
TPR.G15509 Trifolium pratense HOM05D000870 ORTHO05D000715 2.4e-12 76.3 83 56.6
COL.COLO4_10920 Corchorus olitorius HOM05D000870 ORTHO05D000715 3.1e-12 75.9 83 56.6
Gohir.D05G299500 Gossypium hirsutum HOM05D000870 ORTHO05D000715 3.1e-12 75.9 83 56.6
Gorai.009G317000 Gossypium raimondii HOM05D000870 ORTHO05D000715 3.1e-12 75.9 83 56.6
AUR62022527 Chenopodium quinoa HOM05D000870 ORTHO05D000715 4.1e-12 75.5 83 57.8
AUR62035956 Chenopodium quinoa HOM05D000870 ORTHO05D000715 4.1e-12 75.5 83 57.8
Thhalv10016762m.g Eutrema salsugineum HOM05D000870 ORTHO05D000715 4.1e-12 75.5 83 55.4
MBI05_g07851_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 4.1e-12 75.5 84 54.8
Os01g0837800 Oryza sativa ssp. japonica HOM05D000870 ORTHO05D000715 4.1e-12 75.5 83 55.4
Prupe.2G227500 Prunus persica HOM05D000870 ORTHO05D000715 4.1e-12 75.5 83 57.8
Aa31LG5G20150 Aethionema arabicum HOM05D000870 ORTHO05D000715 5.3e-12 75.1 83 55.4
Nn2g10502 Nelumbo nucifera HOM05D000870 ORTHO05D000715 5.3e-12 75.1 84 54.8
Nitab4.5_0000914g0320 Nicotiana tabacum HOM05D000870 ORTHO05D000715 5.3e-12 75.1 83 56.6
Nitab4.5_0006851g0030 Nicotiana tabacum HOM05D000870 ORTHO05D000715 5.3e-12 75.1 83 56.6
Oeu025628.1 Olea europaea HOM05D000870 ORTHO05D000715 5.3e-12 75.1 83 56.6
Sc09g0007170 Simmondsia chinensis HOM05D000870 ORTHO05D000715 5.3e-12 75.1 84 54.8
Eucgr.G02893 Eucalyptus grandis HOM05D000870 ORTHO05D000715 7.0e-12 74.7 84 56.0
Sed0027298 Sechium edule HOM05D000870 ORTHO05D000715 7.0e-12 74.7 84 56.0
Duzib106G1966 Durio zibethinus HOM05D000870 ORTHO05D000715 9.1e-12 74.3 84 56.0
Glyma.02G095400 Glycine max HOM05D000870 ORTHO05D000715 9.1e-12 74.3 83 55.4
Gohir.A05G299700 Gossypium hirsutum HOM05D000870 ORTHO05D000715 9.1e-12 74.3 83 55.4
MD07G1190000 Malus domestica HOM05D000870 ORTHO05D000715 9.1e-12 74.3 83 55.4
Hund20002 Selenicereus undatus HOM05D000870 ORTHO05D000715 9.1e-12 74.3 84 56.0
Atru.chr12.562 Acer truncatum HOM05D000870 ORTHO05D000715 1.2e-11 73.9 83 55.4
CiPaw.02G180100 Carya illinoinensis HOM05D000870 ORTHO05D000715 1.2e-11 73.9 83 56.6
Oeu023556.2 Olea europaea HOM05D000870 ORTHO05D000715 1.2e-11 73.9 84 54.8
Zm00001eb148620 Zea mays HOM05D000870 ORTHO05D000715 1.2e-11 73.9 83 55.4
EL10Ac2g03459 Beta vulgaris HOM05D000870 ORTHO05D000715 1.6e-11 73.6 83 54.2
Manes.10G037600 Manihot esculenta HOM05D000870 ORTHO05D000715 1.6e-11 73.6 84 54.8
BcaC02g07403 Brassica carinata HOM05D000870 ORTHO05D000715 2.0e-11 73.2 83 54.2
BcaC02g12075 Brassica carinata HOM05D000870 ORTHO05D000715 2.0e-11 73.2 84 53.6
C04p08200 Brassica napus HOM05D000870 ORTHO05D000715 2.0e-11 73.2 84 53.6
C04p08260 Brassica napus HOM05D000870 ORTHO05D000715 2.0e-11 73.2 84 53.6
Lalb_Chr04g0257941 Lupinus albus HOM05D000870 ORTHO05D000715 2.0e-11 73.2 84 53.6
Nn2g12876 Nelumbo nucifera HOM05D000870 ORTHO05D000715 2.0e-11 73.2 84 53.6
Potri.010G211300 Populus trichocarpa HOM05D000870 ORTHO05D000715 2.0e-11 73.2 83 56.6
TWI63G1221 Tripterygium wilfordii HOM05D000870 ORTHO05D000715 2.0e-11 73.2 83 56.6
Ah.16g107570 Amaranthus hybridus HOM05D000870 ORTHO05D000715 2.6e-11 72.8 83 55.4
Aqoxy4G03049 Aquilegia oxysepala HOM05D000870 ORTHO05D000715 2.6e-11 72.8 83 54.2
CANSAT54G0016 Cannabis sativa HOM05D000870 ORTHO05D000715 2.6e-11 72.8 84 54.8
Cfa001540 Carpinus fangiana HOM05D000870 ORTHO05D000715 2.6e-11 72.8 83 56.6
AL463U10030 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 3.5e-11 72.4 83 53.0
CARHR134320 Cardamine hirsuta HOM05D000870 ORTHO05D000715 3.5e-11 72.4 84 53.6
QL08p057959 Quercus lobata HOM05D000870 ORTHO05D000715 3.5e-11 72.4 107 47.7
AL4G36840 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
AT2G39450 Arabidopsis thaliana HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
BcaB06g29087 Brassica carinata HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
A04p30450 Brassica napus HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
A05p06940 Brassica napus HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
C04p67350 Brassica napus HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
BolC4t28230H Brassica oleracea HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
BraA04t18463Z Brassica rapa HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
Carub.0004s2152 Capsella rubella HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
Eucgr.J01168 Eucalyptus grandis HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 55.4
FvH4_7g21220 Fragaria vesca HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 55.4
FAN03G1595 Fragaria x ananassa HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 55.4
FAN06G4451 Fragaria x ananassa HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 55.4
FAN10G3981 Fragaria x ananassa HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 55.4
Potri.008G049600 Populus trichocarpa HOM05D000870 ORTHO05D000715 4.5e-11 72.0 84 53.6
RcHm_v2.0_Chr1g0365671 Rosa chinensis HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 55.4
Sp4g08160 Schrenkiella parvula HOM05D000870 ORTHO05D000715 4.5e-11 72.0 83 53.0
BcaB02g09118 Brassica carinata HOM05D000870 ORTHO05D000715 5.9e-11 71.6 83 53.0
Cpa.g.sc1.332 Carica papaya HOM05D000870 ORTHO05D000715 5.9e-11 71.6 83 54.2
Duzib114G0076 Durio zibethinus HOM05D000870 ORTHO05D000715 5.9e-11 71.6 84 54.8
CDE09G0752 Ceratophyllum demersum HOM05D000870 ORTHO05D000715 1.0e-10 70.9 82 53.7
HanXRQChr09g0247671 Helianthus annuus HOM05D000870 ORTHO05D000715 1.0e-10 70.9 82 54.9
MD01G1120600 Malus domestica HOM05D000870 ORTHO05D000715 1.3e-10 70.5 83 54.2
HPP92_015404 Vanilla planifolia HOM05D000870 ORTHO05D000715 1.7e-10 70.1 83 51.8
HPP92_026993 Vanilla planifolia HOM05D000870 ORTHO05D000715 1.7e-10 70.1 83 51.8
ATR0751G193 Amborella trichopoda HOM05D000870 ORTHO05D000715 2.2e-10 69.7 83 53.0
ECA232G3794 Erigeron canadensis HOM05D000870 ORTHO05D000715 2.2e-10 69.7 83 54.2
DCAR_015229 Daucus carota HOM05D000870 ORTHO05D000715 3.8e-10 68.9 83 55.4
Lsat_1_v5_gn_9_66501 Lactuca sativa HOM05D000870 ORTHO05D000715 3.8e-10 68.9 83 53.0
Carub.0004s0709 Capsella rubella HOM05D000870 ORTHO05D000715 5.0e-10 68.6 83 51.8
Lsat_1_v5_gn_8_17280 Lactuca sativa HOM05D000870 ORTHO05D000715 1.1e-09 67.4 122 41.8
HPP92_019816 Vanilla planifolia HOM05D000870 ORTHO05D000715 1.9e-09 66.6 173 32.4
Oeu033413.1 Olea europaea HOM05D000870 ORTHO05D000715 2.5e-09 66.2 89 48.3
PSO206G0056 Papaver somniferum HOM05D000870 ORTHO05D000715 3.2e-09 65.9 83 48.2
PSO339G2412 Papaver somniferum HOM05D000870 ORTHO05D000715 4.2e-09 65.5 84 48.8
SHI22537 Sapria himalayana HOM05D000870 ORTHO05D000715 4.2e-09 65.5 83 50.6
SMO146G0117 Selaginella moellendorffii HOM05D000870 ORTHO05D000715 4.2e-09 65.5 88 46.6
SEGI_39277 Sequoiadendron giganteum HOM05D000870 ORTHO05D000715 2.1e-08 63.2 84 45.2
Os05g0461900 Oryza sativa ssp. japonica HOM05D000870 ORTHO05D000715 2.7e-08 62.8 84 47.6
THA.LOC104799375 Tarenaya hassleriana HOM05D000870 ORTHO05D000715 4.7e-08 62.0 86 47.7
MBI18_g44003_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 4.0e-07 58.9 84 41.7
SEGI_24780 Sequoiadendron giganteum HOM05D000870 ORTHO05D000715 4.0e-07 58.9 150 34.7
SEGI_21398 Sequoiadendron giganteum HOM05D000870 ORTHO05D000715 8.8e-07 57.8 84 44.0
AagrBONN_evm.TU.Sc2ySwM_117.1038 Anthoceros agrestis HOM05D000870 ORTHO05D000715 1.2e-06 57.4 83 45.8
MBI18_g01535_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 1.5e-06 57.0 83 41.0
MBI18_g01536_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 1.5e-06 57.0 125 34.4
MBI18_g44002_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 1.5e-06 57.0 83 39.8
Mapoly0075s0080 Marchantia polymorpha HOM05D000870 ORTHO05D000715 2.0e-06 56.6 84 45.2
Dinv19579 Davidia involucrata HOM05D000870 ORTHO05D000715 3.3e-06 55.8 106 34.9
Nitab4.5_0011518g0030 Nicotiana tabacum HOM05D000870 ORTHO05D000715 4.4e-06 55.5 98 37.8
Peaxi162Scf00006g01613 Petunia axillaris HOM05D000870 ORTHO05D000715 5.7e-06 55.1 106 36.8
Rhsim06G0243200 Rhododendron simsii HOM05D000870 ORTHO05D000715 5.7e-06 55.1 108 35.2
ATR1125G013 Amborella trichopoda HOM05D000870 ORTHO05D000715 7.5e-06 54.7 83 42.2
Duzib268G0052 Durio zibethinus HOM05D000870 ORTHO05D000715 7.5e-06 54.7 83 37.3
Glyma.09G099500 Glycine max HOM05D000870 ORTHO05D000715 7.5e-06 54.7 83 39.8
MBI18_g25299_MAGBIO Magnolia biondii HOM05D000870 ORTHO05D000715 7.5e-06 54.7 83 37.3
Cfa019388 Carpinus fangiana HOM05D000870 ORTHO05D000715 9.7e-06 54.3 109 33.9
Nitab4.5_0003134g0040 Nicotiana tabacum HOM05D000870 ORTHO05D000715 9.7e-06 54.3 122 31.1


User provided reference genes

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