Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04070 Davidia involucrata HOM05D019202 ORTHO05D009660 1.8e-102 375.9 191 100.0
Hma1.2p1_0253F.1_g103130 Hydrangea macrophylla HOM05D000004 ORTHO05D000563 2.2e-36 156.4 243 41.2
Atru.chr5.2438 Acer truncatum HOM05D030512 ORTHO05D026243 3.8e-28 129.0 188 43.6
Atru.chr1.2265 Acer truncatum HOM05D000004 ORTHO05D000002 9.1e-22 107.8 187 37.4
Dinv09513 Davidia involucrata HOM05D000031 ORTHO05D001033 3.8e-20 102.4 61 82.0
PGR119G2216 Punica granatum HOM05D000004 ORTHO05D000563 1.5e-19 100.5 237 34.2
PGR102G0017 Punica granatum HOM05D000004 ORTHO05D000002 7.2e-19 98.2 223 32.3
EL10Ac3g06996 Beta vulgaris HOM05D008382 ORTHO05D000563 3.0e-17 92.8 175 34.9
Prupe.7G030900 Prunus persica HOM05D008382 ORTHO05D009660 3.0e-17 92.8 171 39.2
Potri.001G006850 Populus trichocarpa HOM05D028484 ORTHO05D000563 6.7e-17 91.7 182 36.3
Medtr2g076860 Medicago truncatula HOM05D008382 ORTHO05D011503 1.2e-16 90.9 154 36.4
Potri.003G026106 Populus trichocarpa HOM05D028484 ORTHO05D000002 1.2e-16 90.9 154 36.4
EL10As2g23215 Beta vulgaris HOM05D008382 ORTHO05D000002 2.6e-16 89.7 171 34.5
Dinv20069 Davidia involucrata HOM05D019202 ORTHO05D009660 4.4e-16 89.0 55 80.0
RcHm_v2.0_Chr3g0461881 Rosa chinensis HOM05D000004 ORTHO05D000002 4.4e-16 89.0 190 33.7
EL10Ac2g03748 Beta vulgaris HOM05D000004 ORTHO05D000002 7.5e-16 88.2 177 33.3
FvH4_4g14286 Fragaria vesca HOM05D008382 ORTHO05D000563 1.7e-15 87.0 226 31.0
CAN.G2.23 Capsicum annuum HOM05D008382 ORTHO05D009660 4.8e-15 85.5 137 35.8
EL10Ac6g14458 Beta vulgaris HOM05D008382 ORTHO05D011503 6.3e-15 85.1 194 31.4
EL10Ac2g03002 Beta vulgaris HOM05D000004 ORTHO05D000002 1.1e-14 84.3 170 32.9
TPR.G29747 Trifolium pratense HOM05D000004 ORTHO05D000002 2.4e-14 83.2 169 32.5
Psat7g116360 Pisum sativum HOM05D008382 ORTHO05D011503 5.9e-13 78.6 112 38.4
EL10Ac1g00890 Beta vulgaris HOM05D008382 ORTHO05D000002 1.7e-12 77.0 166 33.7
FvH4_4g12742 Fragaria vesca HOM05D000004 ORTHO05D000002 2.9e-12 76.3 194 30.9
Dinv38966 Davidia involucrata HOM05D000151 ORTHO05D000074 1.9e-11 73.6 169 28.4
Actinidia10157 Actinidia chinensis HOM05D000124 ORTHO05D009660 2.5e-11 73.2 76 48.7
BcaC07g39411 Brassica carinata HOM05D008382 ORTHO05D011503 2.5e-11 73.2 158 31.6
AUR62028416 Chenopodium quinoa HOM05D008382 ORTHO05D000563 5.5e-11 72.0 156 31.4
FvH4_2g17922 Fragaria vesca HOM05D000004 ORTHO05D000002 1.2e-10 70.9 51 64.7
PGR083G1481 Punica granatum HOM05D000004 ORTHO05D000002 1.2e-10 70.9 172 33.7
TPR.G4156 Trifolium pratense HOM05D000007 ORTHO05D000521 1.6e-10 70.5 152 32.9
TAR135G0002 Trochodendron aralioides HOM05D000004 ORTHO05D000002 1.6e-10 70.5 142 35.2
PGR031G2743 Punica granatum HOM05D000004 ORTHO05D000002 2.1e-10 70.1 113 38.9
QL09p008939 Quercus lobata HOM05D000004 ORTHO05D000002 3.6e-10 69.3 207 29.0
QL11p024776 Quercus lobata HOM05D000004 ORTHO05D000002 1.4e-09 67.4 207 28.5
TWI59G0882 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.3e-09 66.6 49 61.2
Nn6g33985 Nelumbo nucifera HOM05D013991 ORTHO05D009660 4.0e-09 65.9 124 39.5
RcHm_v2.0_Chr4g0427231 Rosa chinensis HOM05D000004 ORTHO05D000002 4.0e-09 65.9 51 62.7
FvH4_6g32372 Fragaria vesca HOM05D008382 ORTHO05D000563 5.2e-09 65.5 51 56.9
PSO063G1779 Papaver somniferum HOM05D000004 ORTHO05D000002 1.2e-08 64.3 119 33.6
FvH4_3g34591 Fragaria vesca HOM05D008382 ORTHO05D000563 2.0e-08 63.5 65 46.2
FvH4_4g24071 Fragaria vesca HOM05D008382 ORTHO05D000563 2.0e-08 63.5 51 54.9
PGR134G0003 Punica granatum HOM05D000004 ORTHO05D000002 2.6e-08 63.2 147 34.0
TPR.G22660 Trifolium pratense HOM05D000149 ORTHO05D000076 2.6e-08 63.2 55 58.2
TWI77G0626 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 2.6e-08 63.2 113 36.3
FvH4_3g27861 Fragaria vesca HOM05D000004 ORTHO05D000002 3.4e-08 62.8 45 60.0
FvH4_5g39371 Fragaria vesca HOM05D000004 ORTHO05D000002 3.4e-08 62.8 51 54.9
FvH4_5g21912 Fragaria vesca HOM05D008382 ORTHO05D000563 4.4e-08 62.4 51 52.9
PSO339G2721 Papaver somniferum HOM05D000004 ORTHO05D000002 4.4e-08 62.4 55 52.7
PGR119G1429 Punica granatum HOM05D000004 ORTHO05D000002 4.4e-08 62.4 163 34.4
FvH4_2g17921 Fragaria vesca HOM05D008382 ORTHO05D009660 5.7e-08 62.0 91 40.7
PSO063G7224 Papaver somniferum HOM05D000004 ORTHO05D000002 5.7e-08 62.0 71 45.1
FvH4_2g28221 Fragaria vesca HOM05D008382 ORTHO05D000563 7.5e-08 61.6 51 52.9
PSO017G0752 Papaver somniferum HOM05D000004 ORTHO05D000002 7.5e-08 61.6 54 53.7
PSO017G7238 Papaver somniferum HOM05D000004 ORTHO05D000002 7.5e-08 61.6 71 45.1
PGR029G0004 Punica granatum HOM05D000004 ORTHO05D000002 7.5e-08 61.6 55 49.1
Thecc.05G102300 Theobroma cacao HOM05D000004 ORTHO05D000563 7.5e-08 61.6 167 29.3
TPR.G533 Trifolium pratense HOM05D008382 ORTHO05D011503 7.5e-08 61.6 43 67.4
FvH4_3g40201 Fragaria vesca HOM05D000004 ORTHO05D000002 1.7e-07 60.5 87 41.4
Hma1.2p1_2925F.1_g330460 Hydrangea macrophylla HOM05D000004 ORTHO05D000002 2.2e-07 60.1 209 28.7
PSO063G2514 Papaver somniferum HOM05D000004 ORTHO05D000002 2.8e-07 59.7 99 36.4
Manes.14G147049 Manihot esculenta HOM05D000004 ORTHO05D000002 4.8e-07 58.9 138 30.4
BraA04t16042Z Brassica rapa HOM05D000104 ORTHO05D005891 6.3e-07 58.5 42 61.9
Eucgr.L00350 Eucalyptus grandis HOM05D000018 ORTHO05D000453 6.3e-07 58.5 90 38.9
Hma1.2p1_1923F.1_g307620 Hydrangea macrophylla HOM05D000004 ORTHO05D000563 6.3e-07 58.5 127 28.3
PSO339G5592 Papaver somniferum HOM05D000004 ORTHO05D000002 8.3e-07 58.2 159 26.4
PSO761G0440 Papaver somniferum HOM05D000004 ORTHO05D000002 8.3e-07 58.2 54 50.0
PSO832G1458 Papaver somniferum HOM05D000004 ORTHO05D009660 8.3e-07 58.2 78 38.5
FvH4_6g32371 Fragaria vesca HOM05D008382 ORTHO05D011503 1.1e-06 57.8 129 34.1
PSO541G3038 Papaver somniferum HOM05D000004 ORTHO05D000563 1.1e-06 57.8 76 38.2
PSO675G2557 Papaver somniferum HOM05D000004 ORTHO05D000002 1.1e-06 57.8 137 28.5
PSO675G7964 Papaver somniferum HOM05D000004 ORTHO05D000002 1.1e-06 57.8 54 48.1
FvH4_3g10372 Fragaria vesca HOM05D001538 ORTHO05D000007 1.4e-06 57.4 51 52.9
MBI18_g26690_MAGBIO Magnolia biondii HOM05D013991 ORTHO05D009660 1.4e-06 57.4 50 50.0
FvH4_4g12251 Fragaria vesca HOM05D008382 ORTHO05D000002 1.8e-06 57.0 49 57.1
Sabra19G0021900 Salix brachista HOM05D000004 ORTHO05D000002 1.8e-06 57.0 202 26.2
ClCG09G013120 Citrullus lanatus HOM05D000004 ORTHO05D009660 2.4e-06 56.6 126 31.0
ClCG10G011900 Citrullus lanatus HOM05D000004 ORTHO05D000002 2.4e-06 56.6 120 33.3
TAR694G0001 Trochodendron aralioides HOM05D000374 ORTHO05D000238 3.1e-06 56.2 50 52.0
Manes.16G085001 Manihot esculenta HOM05D000004 ORTHO05D000002 4.1e-06 55.8 147 26.5
CiPaw.05G240600 Carya illinoinensis HOM05D008382 ORTHO05D009660 5.4e-06 55.5 69 40.6
Manes.16G058925 Manihot esculenta HOM05D000004 ORTHO05D000002 5.4e-06 55.5 75 38.7
Psat3g118480 Pisum sativum HOM05D010412 ORTHO05D011503 5.4e-06 55.5 88 39.8
PGR083G2793 Punica granatum HOM05D000004 ORTHO05D000002 5.4e-06 55.5 240 23.3
EL10As9g23944 Beta vulgaris HOM05D000178 ORTHO05D000229 7.0e-06 55.1 68 42.6
Dinv06798 Davidia involucrata HOM05D000004 ORTHO05D000563 7.0e-06 55.1 56 46.4
SabraUnG0000900 Salix brachista HOM05D000004 ORTHO05D000002 7.0e-06 55.1 209 25.8
MBI02_g39882_MAGBIO Magnolia biondii HOM05D013991 ORTHO05D009660 9.1e-06 54.7 66 43.9
MBI05_g17915_MAGBIO Magnolia biondii HOM05D008755 ORTHO05D009660 9.1e-06 54.7 79 39.2
MBI11_g27927_MAGBIO Magnolia biondii HOM05D013991 ORTHO05D009660 9.1e-06 54.7 78 41.0
PSO063G2046 Papaver somniferum HOM05D000004 ORTHO05D000002 9.1e-06 54.7 69 40.6


User provided reference genes

Program Settings