Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04036 Davidia involucrata HOM05D002969 ORTHO05D003308 0.0e+00 2147.9 1093 100.0
Dinv30672 Davidia involucrata HOM05D002969 ORTHO05D003308 0.0e+00 1902.5 968 98.5
Dinv34332 Davidia involucrata HOM05D002969 ORTHO05D003308 0.0e+00 1902.5 968 98.5
CSS0043728 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 0.0e+00 1466.4 968 77.3
Actinidia32183 Actinidia chinensis HOM05D002969 ORTHO05D003308 0.0e+00 1439.1 972 76.1
Rhsim08G0238100 Rhododendron simsii HOM05D002969 ORTHO05D003308 0.0e+00 1384.4 970 72.6
TAR626G1632 Trochodendron aralioides HOM05D002969 ORTHO05D003308 0.0e+00 1378.2 970 72.1
Lj7C292T8 Lonicera japonica HOM05D002969 ORTHO05D003308 0.0e+00 1282.3 970 69.4
Nn7g36584 Nelumbo nucifera HOM05D002969 ORTHO05D003308 0.0e+00 1260.7 975 66.6
Oeu007563.1 Olea europaea HOM05D002969 ORTHO05D003308 0.0e+00 1254.6 970 66.7
CSS0047313 Camellia sinensis var. sinensis HOM05D002969 ORTHO05D003308 0.0e+00 1237.2 822 76.9
GSVIVG01016771001 Vitis vinifera HOM05D002969 ORTHO05D003308 0.0e+00 1194.5 969 64.8
Cc02_g14940 Coffea canephora HOM05D002969 ORTHO05D003308 0.0e+00 1173.7 972 63.2
Cfa003537 Carpinus fangiana HOM05D002969 ORTHO05D003308 0.0e+00 1172.9 969 62.7
Haze_16025 Corylus avellana HOM05D002969 ORTHO05D003308 0.0e+00 1169.1 969 62.4
QL05p007828 Quercus lobata HOM05D002969 ORTHO05D003308 0.0e+00 1162.5 968 61.7
Lj5C38T4 Lonicera japonica HOM05D002969 ORTHO05D003308 0.0e+00 1128.2 973 63.2
PSO447G0254 Papaver somniferum HOM05D002969 ORTHO05D003308 0.0e+00 1116.7 979 60.8
MSTRG.10956 Avicennia marina HOM05D002969 ORTHO05D003308 0.0e+00 1110.5 973 59.7
Aqoxy7G01394 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 0.0e+00 1092.0 971 60.1
Lsat_1_v5_gn_5_75740 Lactuca sativa HOM05D002969 ORTHO05D003308 0.0e+00 1083.9 984 59.7
DCAR_022697 Daucus carota HOM05D002969 ORTHO05D003308 0.0e+00 1077.0 969 59.8
DCAR_016128 Daucus carota HOM05D002969 ORTHO05D003308 2.5e-310 1068.9 970 60.2
Ciclev10024687m.g Citrus clementina HOM05D002969 ORTHO05D003308 2.4e-308 1062.4 975 58.4
Migut.I01069 Erythranthe guttata HOM05D002969 ORTHO05D003308 7.6e-307 1057.4 1016 56.1
ECA247G3059 Erigeron canadensis HOM05D002969 ORTHO05D003308 3.2e-305 1052.0 973 59.0
Nitab4.5_0000794g0160 Nicotiana tabacum HOM05D002969 ORTHO05D003308 4.2e-305 1051.6 992 58.0
Peaxi162Scf00068g02519 Petunia axillaris HOM05D002969 ORTHO05D003308 7.9e-304 1047.3 981 58.3
PSO210G6259 Papaver somniferum HOM05D002969 ORTHO05D003308 8.2e-301 1037.3 931 59.2
ECA240G4395 Erigeron canadensis HOM05D002969 ORTHO05D003308 1.0e-295 1020.4 973 57.2
SGA_v2.0_scaffold71G23857 Striga asiatica HOM05D002969 ORTHO05D003308 1.4e-295 1020.0 1035 54.5
Gorai.012G011500 Gossypium raimondii HOM05D002969 ORTHO05D003308 5.1e-295 1018.1 969 56.4
MELO3C006797.2 Cucumis melo HOM05D002969 ORTHO05D003308 7.4e-294 1014.2 975 55.3
PGR102G0955 Punica granatum HOM05D002969 ORTHO05D003308 1.3e-293 1013.4 979 55.2
HanXRQChr10g0301861 Helianthus annuus HOM05D002969 ORTHO05D003308 1.7e-293 1013.1 975 56.5
COL.COLO4_30764 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.8e-292 1009.6 1022 54.7
ClCG05G007230 Citrullus lanatus HOM05D002969 ORTHO05D003308 9.1e-292 1007.3 990 54.6
Gohir.A05G405950 Gossypium hirsutum HOM05D002969 ORTHO05D003308 7.7e-291 1004.2 969 56.0
Sopen09g004560 Solanum pennellii HOM05D002969 ORTHO05D003308 1.4e-289 1000.0 970 55.9
Solyc09g009800.3 Solanum lycopersicum HOM05D002969 ORTHO05D003308 4.2e-289 998.4 968 55.7
CsaV3_3G015990 Cucumis sativus L. HOM05D002969 ORTHO05D003308 4.7e-288 995.0 976 54.8
Atru.chr1.3951 Acer truncatum HOM05D002969 ORTHO05D003308 6.7e-287 991.1 1034 53.5
MD09G1184300 Malus domestica HOM05D002969 ORTHO05D003308 2.6e-286 989.2 969 54.6
Lsat_1_v5_gn_1_38040 Lactuca sativa HOM05D002969 ORTHO05D003308 7.7e-283 977.6 1028 54.0
TWI31G0668 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 5.0e-282 974.9 968 54.8
Sed0027017 Sechium edule HOM05D002969 ORTHO05D003308 2.5e-281 972.6 988 53.0
Sc18g0005650 Simmondsia chinensis HOM05D002969 ORTHO05D003308 5.5e-281 971.5 986 53.2
SalBow6G7155 Salvia bowleyana HOM05D002969 ORTHO05D003308 4.0e-279 965.3 988 53.1
Duzib235G1299 Durio zibethinus HOM05D002969 ORTHO05D003308 4.4e-278 961.8 854 59.8
Eucgr.J02821 Eucalyptus grandis HOM05D002969 ORTHO05D003308 5.7e-278 961.4 974 54.0
Thecc.06G119100 Theobroma cacao HOM05D002969 ORTHO05D003308 5.0e-274 948.3 851 59.3
THA.LOC104813957 Tarenaya hassleriana HOM05D002969 ORTHO05D003308 2.2e-269 932.9 977 52.4
RcHm_v2.0_Chr2g0145161 Rosa chinensis HOM05D002969 ORTHO05D003308 1.2e-267 927.2 976 53.6
FAN09G2022 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.5e-262 910.2 975 53.1
FAN14G5519 Fragaria x ananassa HOM05D002969 ORTHO05D003308 2.6e-262 909.4 975 53.2
Aa31LG7G2260 Aethionema arabicum HOM05D002969 ORTHO05D003308 4.4e-262 908.7 987 52.3
FvH4_6g34630 Fragaria vesca HOM05D002969 ORTHO05D003308 7.5e-262 907.9 975 53.1
BcaC06g35804 Brassica carinata HOM05D002969 ORTHO05D003308 4.9e-261 905.2 983 51.4
BolC7t41532H Brassica oleracea HOM05D002969 ORTHO05D003308 4.9e-261 905.2 983 51.4
A07p07070 Brassica napus HOM05D002969 ORTHO05D003308 1.1e-260 904.0 983 51.2
BraA07t28494Z Brassica rapa HOM05D002969 ORTHO05D003308 1.1e-260 904.0 983 51.2
C07p10660 Brassica napus HOM05D002969 ORTHO05D003308 1.8e-260 903.3 983 51.3
Sp3g22890 Schrenkiella parvula HOM05D002969 ORTHO05D003308 3.1e-260 902.5 989 51.4
Potri.003G064000 Populus trichocarpa HOM05D002969 ORTHO05D003308 4.1e-260 902.1 978 52.1
FAN05G1938 Fragaria x ananassa HOM05D002969 ORTHO05D003308 5.9e-259 898.3 974 52.9
AL1G29730 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 1.7e-258 896.7 980 51.6
BcaB06g26734 Brassica carinata HOM05D002969 ORTHO05D003308 2.5e-257 892.9 984 50.5
EL10Ac9g22289 Beta vulgaris HOM05D002969 ORTHO05D003308 2.1e-256 889.8 1049 51.0
Carub.0001s1721 Capsella rubella HOM05D002969 ORTHO05D003308 3.6e-256 889.0 979 50.6
CARHR018040 Cardamine hirsuta HOM05D002969 ORTHO05D003308 9.8e-254 880.9 969 51.3
AUR62010285 Chenopodium quinoa HOM05D002969 ORTHO05D003308 1.7e-253 880.2 987 51.9
AT1G17450 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 8.3e-253 877.9 980 50.6
Peaxi162Scf00006g00210 Petunia axillaris HOM05D002969 ORTHO05D003308 2.4e-252 876.3 880 56.0
SEGI_24599 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 9.2e-252 874.4 885 54.6
Sabra03G0037600 Salix brachista HOM05D002969 ORTHO05D003308 6.6e-250 868.2 995 50.9
Thhalv10017997m.g Eutrema salsugineum HOM05D002969 ORTHO05D003308 8.6e-250 867.8 971 50.4
TWI31G0627 Tripterygium wilfordii HOM05D002969 ORTHO05D003308 2.5e-249 866.3 970 49.0
CANSAT54G2721 Cannabis sativa HOM05D002969 ORTHO05D003308 2.4e-236 823.2 965 49.2
AL2G17610 Arabidopsis lyrata HOM05D002969 ORTHO05D003308 2.3e-231 806.6 970 48.4
Carub.0002s0593 Capsella rubella HOM05D002969 ORTHO05D003308 1.2e-230 804.3 967 48.7
ATR0618G078 Amborella trichopoda HOM05D002969 ORTHO05D003308 4.6e-227 792.3 997 47.4
Glyma.19G263900 Glycine max HOM05D002969 ORTHO05D003308 6.9e-223 778.5 974 46.2
Ah.01g018180 Amaranthus hybridus HOM05D002969 ORTHO05D003308 8.9e-223 778.1 935 48.3
Glyma.02G000100 Glycine max HOM05D002969 ORTHO05D003308 2.0e-222 776.9 974 46.5
Cpa.g.sc34.72 Carica papaya HOM05D002969 ORTHO05D003308 4.6e-219 765.8 698 58.7
Prupe.3G042500 Prunus persica HOM05D002969 ORTHO05D003308 1.0e-218 764.6 722 58.0
arahy.Tifrunner.gnm1.ann1.MA4BJF Arachis hypogaea HOM05D002969 ORTHO05D003308 1.7e-218 763.8 977 46.2
arahy.Tifrunner.gnm1.ann1.8DY1VB Arachis hypogaea HOM05D002969 ORTHO05D003308 3.9e-218 762.7 977 46.2
Lalb_Chr10g0094641 Lupinus albus HOM05D002969 ORTHO05D003308 1.6e-216 757.3 978 46.0
AUR62039104 Chenopodium quinoa HOM05D002969 ORTHO05D003308 3.1e-215 753.1 968 48.0
Thecc.06G115400 Theobroma cacao HOM05D002969 ORTHO05D003308 9.9e-214 748.0 1015 45.2
Ca_13957_v3 Cicer arietinum L. HOM05D002969 ORTHO05D003308 1.7e-213 747.3 972 45.3
Ah.01g009920 Amaranthus hybridus HOM05D002969 ORTHO05D003308 4.9e-213 745.7 973 46.2
Gohir.D04G009700 Gossypium hirsutum HOM05D002969 ORTHO05D003308 4.2e-212 742.7 720 56.1
Duzib192G0334 Durio zibethinus HOM05D002969 ORTHO05D003308 1.6e-211 740.7 980 45.6
Lj3g0017600 Lotus japonicus HOM05D002969 ORTHO05D003308 1.3e-210 737.6 977 45.2
TPR.G14707 Trifolium pratense HOM05D002969 ORTHO05D003308 1.3e-210 737.6 973 45.2
Glyma.16G219900 Glycine max HOM05D002969 ORTHO05D003308 6.7e-210 735.3 987 45.4
Phvul.007G234600 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 1.1e-209 734.6 976 44.8
FAN02G4452 Fragaria x ananassa HOM05D002969 ORTHO05D003308 1.5e-209 734.2 981 45.8
Psat1g003120 Pisum sativum HOM05D002969 ORTHO05D003308 9.0e-207 724.9 974 44.4
Manes.11G021000 Manihot esculenta HOM05D002969 ORTHO05D003308 7.4e-201 705.3 733 53.8
TPR.G25535 Trifolium pratense HOM05D002969 ORTHO05D003308 2.4e-199 700.3 982 43.7
SMO119G0293 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 1.4e-196 691.0 1002 42.2
Medtr3g005240 Medicago truncatula HOM05D002969 ORTHO05D003308 4.2e-196 689.5 973 43.5
HPP92_011313 Vanilla planifolia HOM05D002969 ORTHO05D003308 1.8e-194 684.1 971 42.4
Os02g0633100 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 9.3e-188 661.8 981 40.2
Mapoly0002s0195 Marchantia polymorpha HOM05D002969 ORTHO05D003308 3.7e-184 649.8 996 39.3
Pp3c4_16500 Physcomitrium patens HOM05D002969 ORTHO05D003308 1.2e-182 644.8 998 40.9
Zm00001eb254660 Zea mays HOM05D002969 ORTHO05D003308 1.7e-173 614.4 926 39.3
Cfa003558 Carpinus fangiana HOM05D002969 ORTHO05D003308 1.6e-171 607.8 684 49.3
SHI10580 Sapria himalayana HOM05D002969 ORTHO05D000023 4.8e-168 596.3 1007 39.6
MBI06_g44919_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 3.5e-166 590.1 637 53.2
AagrBONN_evm.TU.Sc2ySwM_344.4533 Anthoceros agrestis HOM05D002969 ORTHO05D003308 1.1e-164 585.1 1002 36.8
Zm00001eb254750 Zea mays HOM05D002969 ORTHO05D003308 1.1e-164 585.1 844 41.4
CiPaw.01G219300 Carya illinoinensis HOM05D002969 ORTHO05D003308 2.5e-164 583.9 497 62.8
SMO196G0130 Selaginella moellendorffii HOM05D002969 ORTHO05D003308 6.7e-162 575.9 992 38.0
Haze_15990 Corylus avellana HOM05D002969 ORTHO05D003308 1.7e-160 571.2 684 48.1
MBI06_g12843_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 1.8e-151 541.2 730 45.6
Nitab4.5_0010825g0010 Nicotiana tabacum HOM05D002969 ORTHO05D003308 4.5e-150 536.6 939 37.8
PSO017G0852 Papaver somniferum HOM05D002969 ORTHO05D003308 6.1e-139 499.6 555 51.7
Gorai.010G233800 Gossypium raimondii HOM05D002969 ORTHO05D003308 8.0e-139 499.2 998 35.4
Gohir.A06G192400 Gossypium hirsutum HOM05D002969 ORTHO05D003308 3.0e-138 497.3 998 35.3
AT1G59470 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 3.7e-136 490.3 719 41.9
Gohir.D06G200300 Gossypium hirsutum HOM05D002969 ORTHO05D003308 3.7e-136 490.3 998 35.1
COL.COLO4_30698 Corchorus olitorius HOM05D002969 ORTHO05D003308 7.5e-129 466.1 662 43.2
vmacro15027 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 1.5e-124 451.8 294 75.5
MBI06_g22353_MAGBIO Magnolia biondii HOM05D002969 ORTHO05D003308 7.3e-116 422.9 365 60.0
vmacro15028 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 5.1e-109 400.2 274 73.7
vmacro15024 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 2.0e-97 361.7 253 71.5
Peaxi162Scf00559g00315 Petunia axillaris HOM05D002969 ORTHO05D003308 1.8e-93 348.6 415 50.6
Os02g0316900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 9.6e-92 342.8 636 34.7
MD11G1308600 Malus domestica HOM05D002969 ORTHO05D003308 1.3e-91 342.4 431 45.2
Glyma.12G000400 Glycine max HOM05D002969 ORTHO05D003308 5.8e-89 333.6 484 41.9
vmacro15025 Vaccinium macrocarpon HOM05D002969 ORTHO05D003308 2.2e-88 331.6 261 65.9
Zm00001eb254680 Zea mays HOM05D002969 ORTHO05D003308 2.1e-83 315.1 354 48.0
Phvul.011G011400 Phaseolus vulgaris HOM05D002969 ORTHO05D003308 1.4e-79 302.4 687 33.8
CiPaw.01G219400 Carya illinoinensis HOM05D002969 ORTHO05D003308 9.3e-79 299.7 250 56.8
Zm00001eb247960 Zea mays HOM05D002969 ORTHO05D003308 3.0e-77 294.7 324 48.5
PSO017G1278 Papaver somniferum HOM05D002969 ORTHO05D003308 1.5e-73 282.3 252 60.3
Cpa.g.sc34.76 Carica papaya HOM05D002969 ORTHO05D003308 1.6e-70 272.3 259 56.8
Zm00001eb254770 Zea mays HOM05D002969 ORTHO05D003308 3.0e-61 241.5 307 43.0
AT1G59460 Arabidopsis thaliana HOM05D002969 ORTHO05D003308 4.5e-57 227.6 208 58.7
Zm00001eb247980 Zea mays HOM05D002969 ORTHO05D003308 1.3e-56 226.1 281 42.7
PSO478G1045 Papaver somniferum HOM05D002969 ORTHO05D003308 4.8e-51 207.6 195 56.4
GSVIVG01001689001 Vitis vinifera HOM05D002969 ORTHO05D003308 1.0e-48 199.9 161 61.5
Aqoxy4G01956 Aquilegia oxysepala HOM05D002969 ORTHO05D003308 3.3e-44 184.9 350 37.7
Lalb_Chr10g0094391 Lupinus albus HOM05D002969 ORTHO05D003308 9.7e-44 183.3 207 50.7
FvH4_2g23920 Fragaria vesca HOM05D002969 ORTHO05D003308 8.5e-40 170.2 433 29.1
FAN24G1542 Fragaria x ananassa HOM05D002969 ORTHO05D003308 8.5e-40 170.2 433 29.1
Os05g0569900 Oryza sativa ssp. japonica HOM05D002969 ORTHO05D003308 2.3e-37 162.2 248 35.5
Ah.01g009880 Amaranthus hybridus HOM05D002969 ORTHO05D003308 3.0e-37 161.8 152 56.6
FAN15G1247 Fragaria x ananassa HOM05D002969 ORTHO05D003308 4.0e-37 161.4 447 27.1
FAN27G1917 Fragaria x ananassa HOM05D002969 ORTHO05D003308 7.5e-36 157.1 429 27.3
COL.COLO4_27975 Corchorus olitorius HOM05D002969 ORTHO05D003308 5.4e-34 151.0 166 53.0
unitig_26.g8927 Utricularia gibba HOM05D002969 ORTHO05D003308 4.4e-28 131.3 623 23.4
CAN.G397.52 Capsicum annuum HOM05D002969 ORTHO05D003308 2.0e-25 122.5 114 50.9
SEGI_18157 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 5.9e-25 120.9 103 64.1
Cre12.g518107 Chlamydomonas reinhardtii HOM05D002969 ORTHO05D003308 2.8e-22 112.1 362 23.2
Zm00001eb254790 Zea mays HOM05D002969 ORTHO05D003308 4.7e-22 111.3 122 50.0
SEGI_00337 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 8.0e-22 110.5 119 50.4
SEGI_24169 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 5.8e-20 104.4 91 54.9
Peaxi162Scf00006g00211 Petunia axillaris HOM05D002969 ORTHO05D003308 1.4e-18 99.8 107 46.7
SEGI_18101 Sequoiadendron giganteum HOM05D002969 ORTHO05D003308 2.7e-17 95.5 104 51.0
Nitab4.5_0010825g0020 Nicotiana tabacum HOM05D002969 ORTHO05D003308 1.0e-16 93.6 130 39.2
RcHm_v2.0_Chr6g0291541 Rosa chinensis HOM05D002969 ORTHO05D003308 5.0e-16 91.3 119 41.2
COL.COLO4_30699 Corchorus olitorius HOM05D002969 ORTHO05D003308 1.5e-15 89.7 117 37.6
RcHm_v2.0_Chr6g0291551 Rosa chinensis HOM05D002969 ORTHO05D003308 1.8e-13 82.8 120 38.3
CARHR117350 Cardamine hirsuta HOM05D002969 ORTHO05D003308 2.6e-12 79.0 69 58.0
Potri.001G170001 Populus trichocarpa HOM05D002969 ORTHO05D003308 2.2e-11 75.9 135 37.8
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 7.3e-07 60.8 68 39.7
QL10p018850 Quercus lobata HOM05D002969 ORTHO05D003308 7.3e-07 60.8 81 43.2
Ah.01g018170 Amaranthus hybridus HOM05D002969 ORTHO05D003308 1.2e-06 60.1 49 59.2
Sabra01G0141400 Salix brachista HOM05D002969 ORTHO05D003308 2.8e-06 58.9 208 27.4
CDE02G2049 Ceratophyllum demersum HOM05D002969 ORTHO05D003308 6.2e-06 57.8 40 65.0


User provided reference genes

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