Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 3.0e-154 548.5 283 100.0
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 2.5e-116 422.5 282 78.7
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 1.2e-115 420.2 277 78.3
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 2.1e-115 419.5 264 81.1
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 8.0e-115 417.5 284 78.2
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 1.4e-114 416.8 258 81.0
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 3.9e-114 415.2 256 83.2
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 7.0e-111 404.4 253 79.4
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.6e-110 403.3 256 77.7
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 1.3e-109 400.2 251 78.9
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 3.8e-109 398.7 256 77.7
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 2.5e-108 396.0 250 78.4
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 2.5e-108 396.0 282 71.6
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 1.2e-107 393.7 248 79.0
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 1.0e-106 390.6 269 75.1
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 1.8e-106 389.8 259 74.5
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 1.8e-106 389.8 249 78.3
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 2.3e-106 389.4 250 79.6
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 5.2e-106 388.3 256 76.6
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 8.8e-106 387.5 266 73.3
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 4.4e-105 385.2 259 74.5
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 7.5e-105 384.4 258 75.6
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 1.3e-104 383.6 256 75.8
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 2.8e-104 382.5 247 77.3
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 3.7e-104 382.1 285 69.5
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 4.8e-104 381.7 241 78.8
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 5.3e-103 378.3 255 73.3
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 5.3e-103 378.3 255 73.3
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 4.5e-102 375.2 256 73.4
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 5.9e-102 374.8 280 68.2
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 1.0e-101 374.0 252 73.8
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 2.2e-101 372.9 278 70.5
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 2.2e-101 372.9 309 65.0
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 8.5e-101 370.9 267 71.2
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 3.2e-100 369.0 253 73.5
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 4.2e-100 368.6 275 68.0
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 7.2e-100 367.9 276 68.5
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 7.2e-100 367.9 258 70.5
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 7.2e-100 367.9 260 71.2
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 1.6e-99 366.7 261 68.2
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 2.7e-99 365.9 259 71.0
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 2.7e-99 365.9 249 75.5
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 3.6e-99 365.5 259 72.2
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 6.1e-99 364.8 261 68.2
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 1.0e-98 364.0 277 66.8
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.0e-98 364.0 277 66.8
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 1.8e-98 363.2 261 69.0
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 2.3e-98 362.8 261 68.6
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 3.0e-98 362.5 257 70.4
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 3.0e-98 362.5 285 67.7
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 5.2e-98 361.7 256 71.5
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 7.5e-97 357.8 336 58.6
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 2.8e-96 355.9 259 71.8
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 6.3e-96 354.8 253 70.0
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 9.1e-95 350.9 257 68.1
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 1.2e-94 350.5 245 71.8
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 5.9e-94 348.2 241 75.1
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 7.7e-94 347.8 261 65.9
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 1.3e-93 347.1 258 66.7
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 2.3e-93 346.3 273 62.6
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 2.9e-93 345.9 252 69.8
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 3.8e-93 345.5 247 70.9
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 6.5e-93 344.7 247 68.8
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 1.1e-92 344.0 263 68.4
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 2.5e-92 342.8 267 66.7
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 2.5e-92 342.8 255 69.0
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 3.3e-92 342.4 264 68.9
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 2.3e-90 336.3 257 65.4
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 2.6e-89 332.8 255 65.1
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 3.7e-88 328.9 303 58.4
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 1.1e-87 327.4 258 64.0
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 2.4e-87 326.2 262 63.7
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 5.9e-86 321.6 259 67.2
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.3e-85 320.5 264 62.5
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 1.9e-84 316.6 263 60.8
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 1.9e-84 316.6 263 60.8
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 7.3e-84 314.7 277 61.0
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 9.5e-84 314.3 259 64.1
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 2.3e-82 309.7 263 60.8
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 2.3e-82 309.7 263 60.8
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 8.9e-82 307.8 285 57.2
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 8.9e-82 307.8 285 57.2
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 1.5e-81 307.0 262 61.1
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 3.7e-80 302.4 263 59.7
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 1.6e-78 297.0 253 62.5
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.9e-76 290.0 263 58.6
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 1.6e-75 287.0 263 58.2
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 2.1e-75 286.6 258 60.1
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 3.7e-72 275.8 170 82.4
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 2.1e-70 270.0 197 67.5
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 2.7e-70 269.6 303 52.5
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 2.8e-67 259.6 250 53.2
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 2.8e-67 259.6 214 61.7
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 4.7e-67 258.8 204 64.7
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 1.5e-65 253.8 211 62.6
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.4e-63 246.5 209 67.0
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 1.1e-60 237.7 194 62.9
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.2e-57 227.6 161 68.9
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 5.6e-52 208.8 249 44.6
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 1.4e-50 204.1 200 54.0
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 6.9e-50 201.8 146 68.5
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 4.9e-40 169.1 136 60.3
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 2.1e-38 163.7 141 63.8
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 7.6e-33 145.2 146 53.4
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 6.5e-24 115.5 189 39.2
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 1.1e-18 98.2 243 33.3
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.5e-17 94.4 289 29.8
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 7.2e-15 85.5 102 45.1
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 2.3e-13 80.5 56 67.9
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 2.5e-12 77.0 56 64.3
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 1.4e-10 71.2 125 36.8
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.4e-09 66.6 45 60.0
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 1.1e-07 61.6 245 26.1
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 2.5e-07 60.5 250 24.0
Pp3c5_8450 Physcomitrium patens HOM05D006655 ORTHO05D030199 4.2e-07 59.7 225 26.7
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 9.4e-07 58.5 249 24.5
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 1.2e-06 58.2 239 24.7
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 2.1e-06 57.4 245 24.9
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 2.7e-06 57.0 264 24.2
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 2.7e-06 57.0 250 24.4
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 3.6e-06 56.6 250 23.6
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 3.6e-06 56.6 245 24.5
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 3.6e-06 56.6 250 24.8
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 3.6e-06 56.6 250 24.8
MBI13_g19379_MAGBIO Magnolia biondii HOM05D006655 ORTHO05D007986 3.6e-06 56.6 245 25.7
Actinidia06937 Actinidia chinensis HOM05D006655 ORTHO05D007986 4.7e-06 56.2 270 24.1
Pp3c16_5470 Physcomitrium patens HOM05D003730 ORTHO05D004458 6.1e-06 55.8 230 26.1
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 7.9e-06 55.5 248 24.6


User provided reference genes

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