Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.5e-72 276.2 146 100.0
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 1.3e-57 226.5 147 85.0
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 2.3e-49 199.1 146 72.6
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.6e-48 194.5 146 74.7
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 1.1e-46 190.3 145 71.7
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 2.4e-46 189.1 145 71.0
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 5.3e-46 188.0 148 70.9
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.5e-45 186.4 146 71.2
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.6e-45 185.7 146 69.9
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 4.5e-45 184.9 146 71.2
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 1.0e-44 183.7 145 68.3
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 2.2e-44 182.6 146 70.5
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 3.8e-44 181.8 145 69.0
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 8.4e-44 180.6 146 67.8
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 1.9e-43 179.5 147 68.7
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.9e-43 179.5 146 67.8
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 4.2e-43 178.3 146 67.8
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 7.1e-43 177.6 147 67.3
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 3.5e-42 175.3 158 67.1
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 6.0e-42 174.5 168 62.5
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 7.9e-42 174.1 145 66.2
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.3e-41 172.6 144 66.7
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 2.3e-41 172.6 148 66.9
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 2.3e-41 172.6 145 65.5
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 8.7e-41 170.6 147 64.6
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 8.7e-41 170.6 147 64.6
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 1.5e-40 169.9 146 65.8
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 1.5e-40 169.9 148 66.2
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.9e-40 169.5 147 66.7
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.5e-40 169.1 146 65.8
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 3.3e-40 168.7 146 65.1
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 5.7e-40 167.9 143 66.4
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 7.4e-40 167.5 147 63.3
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.3e-39 166.8 147 63.3
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.2e-39 166.0 145 64.1
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 2.2e-39 166.0 143 65.0
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.1e-38 163.7 145 62.1
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 5.3e-38 161.4 144 59.0
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 6.9e-38 161.0 151 64.9
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 2.6e-37 159.1 148 60.8
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 2.6e-37 159.1 151 59.6
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 5.9e-37 157.9 144 61.1
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 7.7e-37 157.5 145 62.8
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 1.7e-36 156.4 149 63.1
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 2.9e-36 155.6 145 63.4
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 3.8e-36 155.2 146 63.0
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 5.0e-36 154.8 151 58.3
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.9e-35 152.9 141 61.7
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 1.9e-35 152.9 145 61.4
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 2.5e-35 152.5 160 58.8
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 2.5e-35 152.5 149 59.7
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 7.2e-35 151.0 150 58.7
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 1.6e-34 149.8 150 58.0
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 2.1e-34 149.4 148 58.8
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.1e-34 149.4 146 61.0
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 2.7e-34 149.1 148 58.1
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 2.7e-34 149.1 148 58.1
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 2.7e-34 149.1 148 58.1
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 2.7e-34 149.1 147 59.9
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 2.7e-34 149.1 146 62.3
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 4.6e-34 148.3 149 58.4
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 4.6e-34 148.3 130 61.5
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 6.1e-34 147.9 149 59.1
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 6.1e-34 147.9 147 59.2
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 7.9e-34 147.5 149 59.7
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 7.9e-34 147.5 148 57.4
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 1.0e-33 147.1 148 57.4
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.0e-33 147.1 150 59.3
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.0e-33 147.1 148 62.2
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 1.4e-33 146.7 148 57.4
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 1.4e-33 146.7 145 59.3
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 2.3e-33 146.0 149 58.4
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 2.3e-33 146.0 145 58.6
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 3.0e-33 145.6 143 65.7
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 5.1e-33 144.8 149 56.4
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 6.7e-33 144.4 92 81.5
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 6.7e-33 144.4 148 56.8
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 1.1e-32 143.7 144 57.6
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 1.9e-32 142.9 123 61.8
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 1.9e-32 142.9 149 56.4
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 2.5e-32 142.5 139 61.2
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 4.3e-32 141.7 152 55.9
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 1.3e-31 140.2 149 56.4
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 2.2e-31 139.4 145 55.9
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 2.8e-31 139.0 144 57.6
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 8.2e-31 137.5 127 59.8
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 6.9e-30 134.4 158 53.2
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 6.9e-30 134.4 169 52.1
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 9.1e-30 134.0 133 61.7
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 2.6e-29 132.5 146 55.5
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 1.0e-28 130.6 147 56.5
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 1.7e-28 129.8 135 59.3
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 2.9e-28 129.0 153 52.9
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.9e-27 126.3 152 50.0
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 5.5e-27 124.8 158 51.3
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 7.2e-27 124.4 134 55.2
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 1.2e-26 123.6 166 50.0
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 2.7e-26 122.5 122 54.1
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 2.7e-26 122.5 122 57.4
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 2.6e-24 115.9 159 48.4
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 2.6e-24 115.9 145 50.3
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 1.7e-23 113.2 91 65.9
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 3.1e-22 109.0 124 54.0
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 2.6e-21 105.9 146 46.6
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 5.9e-21 104.8 146 47.3
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 1.7e-20 103.2 94 62.8
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.1e-19 100.5 93 61.3
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 1.1e-19 100.5 122 50.0
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 3.2e-19 99.0 80 65.0
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 1.2e-18 97.1 126 49.2
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 1.4e-17 93.6 171 42.1
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.8e-17 93.2 126 47.6
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 1.3e-15 87.0 92 53.3
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 9.1e-14 80.9 125 43.2
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 1.6e-13 80.1 90 50.0
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 5.0e-12 75.1 147 44.2
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 5.0e-12 75.1 99 47.5
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 2.5e-11 72.8 127 40.2
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 9.4e-11 70.9 53 66.0
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 1.6e-10 70.1 105 41.9
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 6.1e-10 68.2 56 62.5
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.2e-09 65.1 50 70.0
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 1.5e-08 63.5 50 64.0
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 2.2e-07 59.7 91 45.1
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 3.7e-07 58.9 33 84.8
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 3.7e-07 58.9 57 52.6
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 3.7e-07 58.9 105 40.0
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 8.2e-07 57.8 42 66.7
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 3.1e-06 55.8 92 44.6


User provided reference genes

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