Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03924 Davidia involucrata HOM05D000777 ORTHO05D000595 4.1e-72 274.6 139 100.0
Dinv07981 Davidia involucrata HOM05D000777 ORTHO05D000595 3.1e-11 72.4 38 86.8
Actinidia19064 Actinidia chinensis HOM05D000777 ORTHO05D000595 5.8e-10 68.2 38 73.7
Peaxi162Scf00689g00542 Petunia axillaris HOM05D000777 ORTHO05D000595 7.6e-10 67.8 43 72.1
Dinv19898 Davidia involucrata HOM05D000777 ORTHO05D000595 9.9e-10 67.4 36 83.3
Solyc03g113520.3 Solanum lycopersicum HOM05D000777 ORTHO05D000595 1.3e-09 67.0 41 73.2
Sopen03g032570 Solanum pennellii HOM05D000777 ORTHO05D000595 1.3e-09 67.0 41 73.2
Actinidia34972 Actinidia chinensis HOM05D000777 ORTHO05D000595 2.2e-09 66.2 37 73.0
CSS0020107 Camellia sinensis var. sinensis HOM05D000777 ORTHO05D000595 2.9e-09 65.9 37 73.0
CAN.G999.16 Capsicum annuum HOM05D000777 ORTHO05D000595 2.9e-09 65.9 41 70.7
Nitab4.5_0000642g0090 Nicotiana tabacum HOM05D000777 ORTHO05D000595 2.9e-09 65.9 41 70.7
Nitab4.5_0005451g0040 Nicotiana tabacum HOM05D000777 ORTHO05D000595 2.9e-09 65.9 41 70.7
DCAR_026089 Daucus carota HOM05D000777 ORTHO05D000595 3.8e-09 65.5 38 76.3
AUR62008325 Chenopodium quinoa HOM05D000777 ORTHO05D000595 6.4e-09 64.7 36 75.0
Rhsim12G0160200 Rhododendron simsii HOM05D000777 ORTHO05D000595 6.4e-09 64.7 36 75.0
PGSC0003DMG400033031 Solanum tuberosum HOM05D000777 ORTHO05D000595 6.4e-09 64.7 38 71.1
Cc04_g17240 Coffea canephora HOM05D000777 ORTHO05D000595 8.4e-09 64.3 36 75.0
Ah.02g113000 Amaranthus hybridus HOM05D000777 ORTHO05D000595 1.1e-08 63.9 36 72.2
EL10Ac5g10892 Beta vulgaris HOM05D000777 ORTHO05D000595 1.1e-08 63.9 36 75.0
AUR62021772 Chenopodium quinoa HOM05D000777 ORTHO05D000595 1.1e-08 63.9 36 72.2
PGSC0003DMG400024567 Solanum tuberosum HOM05D000777 ORTHO05D000595 1.1e-08 63.9 41 70.7
Ah.11g048910 Amaranthus hybridus HOM05D000777 ORTHO05D000595 1.4e-08 63.5 36 75.0
Dinv31154 Davidia involucrata HOM05D000777 ORTHO05D000595 1.4e-08 63.5 48 62.5
CiPaw.11G035000 Carya illinoinensis HOM05D000777 ORTHO05D000595 1.9e-08 63.2 35 71.4
Lj9A457T109 Lonicera japonica HOM05D000777 ORTHO05D000595 1.9e-08 63.2 40 75.0
Hund09382 Selenicereus undatus HOM05D000777 ORTHO05D000595 1.9e-08 63.2 36 75.0
CANSAT80G1153 Cannabis sativa HOM05D000777 ORTHO05D000595 3.2e-08 62.4 62 51.6
Migut.I00108 Erythranthe guttata HOM05D000777 ORTHO05D000595 3.2e-08 62.4 38 71.1
Eucgr.K02906 Eucalyptus grandis HOM05D000777 ORTHO05D000595 3.2e-08 62.4 37 67.6
Hma1.2p1_0002F.1_g003460 Hydrangea macrophylla HOM05D000777 ORTHO05D000595 3.2e-08 62.4 36 75.0
Nitab4.5_0000758g0020 Nicotiana tabacum HOM05D000777 ORTHO05D000595 3.2e-08 62.4 37 67.6
Nitab4.5_0000003g0100 Nicotiana tabacum HOM05D000777 ORTHO05D000595 4.2e-08 62.0 37 64.9
Peaxi162Scf00009g00624 Petunia axillaris HOM05D000777 ORTHO05D000595 4.2e-08 62.0 36 72.2
Oeu005678.1 Olea europaea HOM05D000777 ORTHO05D000595 5.4e-08 61.6 38 71.1
Oeu020068.1 Olea europaea HOM05D000777 ORTHO05D000595 5.4e-08 61.6 38 68.4
Solyc06g071160.3 Solanum lycopersicum HOM05D000777 ORTHO05D000595 5.4e-08 61.6 38 68.4
Sopen06g027460 Solanum pennellii HOM05D000777 ORTHO05D000595 5.4e-08 61.6 38 68.4
CSS0020224 Camellia sinensis var. sinensis HOM05D000777 ORTHO05D000595 7.1e-08 61.2 56 53.6
CAN.G628.55 Capsicum annuum HOM05D000777 ORTHO05D000595 7.1e-08 61.2 38 65.8
PGR044G0362 Punica granatum HOM05D000777 ORTHO05D000595 7.1e-08 61.2 40 62.5
Oeu005676.1 Olea europaea HOM05D000777 ORTHO05D000595 9.3e-08 60.8 38 71.1
Hund02689 Selenicereus undatus HOM05D000777 ORTHO05D000595 9.3e-08 60.8 36 69.4
FAN08G1785 Fragaria x ananassa HOM05D000777 ORTHO05D000595 1.2e-07 60.5 38 65.8
SGA_v2.0_scaffold56G20075 Striga asiatica HOM05D000777 ORTHO05D000595 1.2e-07 60.5 48 58.3
HanXRQChr16g0503411 Helianthus annuus HOM05D000777 ORTHO05D000595 1.6e-07 60.1 60 48.3
Prupe.5G183600 Prunus persica HOM05D000777 ORTHO05D000595 1.6e-07 60.1 37 67.6
TAR629G3083 Trochodendron aralioides HOM05D000777 ORTHO05D000595 1.6e-07 60.1 36 72.2
CAN.G36.21 Capsicum annuum HOM05D000777 ORTHO05D000595 2.1e-07 59.7 41 65.9
Gorai.003G071200 Gossypium raimondii HOM05D000777 ORTHO05D000595 2.1e-07 59.7 75 41.3
BcaC01g01769 Brassica carinata HOM05D000777 ORTHO05D000595 2.7e-07 59.3 60 45.0
BolC3t19507H Brassica oleracea HOM05D000777 ORTHO05D000595 2.7e-07 59.3 60 45.0
Cpa.g.sc5.296 Carica papaya HOM05D000777 ORTHO05D000595 2.7e-07 59.3 37 67.6
Hma1.2p1_0289F.1_g114320 Hydrangea macrophylla HOM05D000777 ORTHO05D000595 2.7e-07 59.3 48 56.2
Sc04g0002280 Simmondsia chinensis HOM05D000777 ORTHO05D000595 2.7e-07 59.3 36 66.7
TAR622G1290 Trochodendron aralioides HOM05D000777 ORTHO05D000595 2.7e-07 59.3 38 68.4
C03p72110 Brassica napus HOM05D000777 ORTHO05D000595 3.5e-07 58.9 60 45.0
Cfa009054 Carpinus fangiana HOM05D000777 ORTHO05D000595 3.5e-07 58.9 50 50.0
CDE05G2527 Ceratophyllum demersum HOM05D000777 ORTHO05D000595 3.5e-07 58.9 35 71.4
Haze_12087 Corylus avellana HOM05D000777 ORTHO05D000595 3.5e-07 58.9 50 50.0
ECA232G1391 Erigeron canadensis HOM05D000777 ORTHO05D000595 3.5e-07 58.9 36 66.7
HanXRQChr09g0271421 Helianthus annuus HOM05D000777 ORTHO05D000595 3.5e-07 58.9 36 66.7
Lsat_1_v5_gn_5_18581 Lactuca sativa HOM05D000777 ORTHO05D000595 3.5e-07 58.9 38 63.2
Sc12g0006040 Simmondsia chinensis HOM05D000777 ORTHO05D000595 3.5e-07 58.9 35 68.6
Sc12g0006070 Simmondsia chinensis HOM05D000777 ORTHO05D000595 3.5e-07 58.9 35 68.6
COL.COLO4_36233 Corchorus olitorius HOM05D000777 ORTHO05D000595 4.6e-07 58.5 37 64.9
DCAR_021545 Daucus carota HOM05D000777 ORTHO05D000595 4.6e-07 58.5 36 69.4
Lsat_1_v5_gn_4_105621 Lactuca sativa HOM05D000777 ORTHO05D000595 4.6e-07 58.5 36 66.7
MD14G1190700 Malus domestica HOM05D000777 ORTHO05D000595 4.6e-07 58.5 36 66.7
Aqoxy3G00829 Aquilegia oxysepala HOM05D000777 ORTHO05D000595 6.0e-07 58.2 54 51.9
FAN02G2925 Fragaria x ananassa HOM05D000777 ORTHO05D000595 6.0e-07 58.2 38 63.2
FAN04G1320 Fragaria x ananassa HOM05D000777 ORTHO05D000595 6.0e-07 58.2 38 63.2
FAN13G0882 Fragaria x ananassa HOM05D000777 ORTHO05D000595 6.0e-07 58.2 38 63.2
Nitab4.5_0001726g0130 Nicotiana tabacum HOM05D000777 ORTHO05D000595 6.0e-07 58.2 36 66.7
SalBow5G3404 Salvia bowleyana HOM05D000777 ORTHO05D000595 6.0e-07 58.2 37 64.9
SalBow8G5109 Salvia bowleyana HOM05D000777 ORTHO05D000595 6.0e-07 58.2 37 64.9
AT5G62620 Arabidopsis thaliana HOM05D000777 ORTHO05D000595 7.9e-07 57.8 63 47.6
MSTRG.23066 Avicennia marina HOM05D000777 ORTHO05D000595 7.9e-07 57.8 38 63.2
MBI04_g18045_MAGBIO Magnolia biondii HOM05D000777 ORTHO05D000595 7.9e-07 57.8 41 65.9
PSO591G0241 Papaver somniferum HOM05D000777 ORTHO05D000595 7.9e-07 57.8 36 63.9
PSO832G2642 Papaver somniferum HOM05D000777 ORTHO05D000595 7.9e-07 57.8 36 63.9
FvH4_5g15890 Fragaria vesca HOM05D000777 ORTHO05D000595 1.0e-06 57.4 38 60.5
FAN18G0801 Fragaria x ananassa HOM05D000777 ORTHO05D000595 1.0e-06 57.4 38 60.5
Gohir.A03G075800 Gossypium hirsutum HOM05D000777 ORTHO05D000595 1.0e-06 57.4 36 63.9
Gohir.D03G090100 Gossypium hirsutum HOM05D000777 ORTHO05D000595 1.0e-06 57.4 36 63.9
MD06G1184800 Malus domestica HOM05D000777 ORTHO05D000595 1.0e-06 57.4 36 63.9
Peaxi162Scf00209g00936 Petunia axillaris HOM05D000777 ORTHO05D000595 1.0e-06 57.4 36 69.4
Atru.chr11.1885 Acer truncatum HOM05D000777 ORTHO05D000595 1.3e-06 57.0 37 62.2
AL8G39510 Arabidopsis lyrata HOM05D000777 ORTHO05D000595 1.3e-06 57.0 63 46.0
Carub.0008s2332 Capsella rubella HOM05D000777 ORTHO05D000595 1.3e-06 57.0 63 46.0
CiPaw.12G020600 Carya illinoinensis HOM05D000777 ORTHO05D000595 1.3e-06 57.0 36 61.1
Haze_07401 Corylus avellana HOM05D000777 ORTHO05D000595 1.3e-06 57.0 37 56.8
Sp2g25800 Schrenkiella parvula HOM05D000777 ORTHO05D000595 1.3e-06 57.0 63 46.0
Sed0019201 Sechium edule HOM05D000777 ORTHO05D000595 1.3e-06 57.0 43 58.1
CARHR276400 Cardamine hirsuta HOM05D000777 ORTHO05D000595 1.7e-06 56.6 63 46.0
Cfa019026 Carpinus fangiana HOM05D000777 ORTHO05D000595 1.7e-06 56.6 37 56.8
Duzib205G1265 Durio zibethinus HOM05D000777 ORTHO05D000595 1.7e-06 56.6 35 65.7
BcaB02g09660 Brassica carinata HOM05D000777 ORTHO05D000595 2.3e-06 56.2 38 63.2
CSS0010438 Camellia sinensis var. sinensis HOM05D000777 ORTHO05D000595 2.3e-06 56.2 37 67.6
CSS0026653 Camellia sinensis var. sinensis HOM05D000777 ORTHO05D000595 2.3e-06 56.2 37 67.6
CAN.G27.50 Capsicum annuum HOM05D000777 ORTHO05D000595 2.3e-06 56.2 36 66.7
HanXRQChr02g0045381 Helianthus annuus HOM05D000777 ORTHO05D000595 2.3e-06 56.2 36 61.1
Lalb_Chr05g0217481 Lupinus albus HOM05D000777 ORTHO05D000595 2.3e-06 56.2 56 42.9
Nitab4.5_0000408g0020 Nicotiana tabacum HOM05D000777 ORTHO05D000595 2.3e-06 56.2 36 66.7
PSO478G1603 Papaver somniferum HOM05D000777 ORTHO05D000595 2.3e-06 56.2 36 61.1
QL10p014434 Quercus lobata HOM05D000777 ORTHO05D000595 2.3e-06 56.2 35 60.0
HPP92_012526 Vanilla planifolia HOM05D000777 ORTHO05D000595 2.3e-06 56.2 36 61.1
Gohir.A04G097200 Gossypium hirsutum HOM05D000777 ORTHO05D000595 3.0e-06 55.8 38 60.5
Gohir.D04G137000 Gossypium hirsutum HOM05D000777 ORTHO05D000595 3.0e-06 55.8 38 60.5
Gorai.012G121200 Gossypium raimondii HOM05D000777 ORTHO05D000595 3.0e-06 55.8 38 60.5
PSO161G0054 Papaver somniferum HOM05D000777 ORTHO05D000595 3.0e-06 55.8 36 61.1
BcaC01g02495 Brassica carinata HOM05D000777 ORTHO05D000595 3.9e-06 55.5 38 60.5
C03p64180 Brassica napus HOM05D000777 ORTHO05D000595 3.9e-06 55.5 38 60.5
BolC3t18674H Brassica oleracea HOM05D000777 ORTHO05D000595 3.9e-06 55.5 38 60.5
CDE06G2186 Ceratophyllum demersum HOM05D000777 ORTHO05D000595 3.9e-06 55.5 54 46.3
Ciclev10019143m.g Citrus clementina HOM05D000777 ORTHO05D000595 3.9e-06 55.5 60 46.7
RcHm_v2.0_Chr7g0180161 Rosa chinensis HOM05D000777 ORTHO05D000595 3.9e-06 55.5 38 60.5
Solyc05g006680.4 Solanum lycopersicum HOM05D000777 ORTHO05D000595 3.9e-06 55.5 36 63.9
Sopen05g002630 Solanum pennellii HOM05D000777 ORTHO05D000595 3.9e-06 55.5 36 63.9
PGSC0003DMG400022627 Solanum tuberosum HOM05D000777 ORTHO05D000595 3.9e-06 55.5 36 63.9
Thecc.03G075000 Theobroma cacao HOM05D000777 ORTHO05D000595 3.9e-06 55.5 36 63.9
Actinidia14051 Actinidia chinensis HOM05D000777 ORTHO05D000595 5.1e-06 55.1 38 60.5
A06p19770 Brassica napus HOM05D000777 ORTHO05D000595 5.1e-06 55.1 54 44.4
A06p29290 Brassica napus HOM05D000777 ORTHO05D000595 5.1e-06 55.1 38 60.5
BraA06t25056Z Brassica rapa HOM05D000777 ORTHO05D000595 5.1e-06 55.1 54 44.4
BraA06t25885Z Brassica rapa HOM05D000777 ORTHO05D000595 5.1e-06 55.1 38 60.5
Duzib248G1515 Durio zibethinus HOM05D000777 ORTHO05D000595 5.1e-06 55.1 38 57.9
Lalb_Chr11g0071551 Lupinus albus HOM05D000777 ORTHO05D000595 5.1e-06 55.1 52 44.2
Os03g0803900 Oryza sativa ssp. japonica HOM05D000777 ORTHO05D000595 5.1e-06 55.1 91 33.0
THA.LOC104821448 Tarenaya hassleriana HOM05D000777 ORTHO05D000595 5.1e-06 55.1 38 60.5
BcaB01g00868 Brassica carinata HOM05D000777 ORTHO05D000595 6.6e-06 54.7 38 60.5
Thhalv10003755m.g Eutrema salsugineum HOM05D000777 ORTHO05D000595 6.6e-06 54.7 61 45.9
Gohir.D02G168600 Gossypium hirsutum HOM05D000777 ORTHO05D000595 6.6e-06 54.7 37 56.8
Gorai.005G189000 Gossypium raimondii HOM05D000777 ORTHO05D000595 6.6e-06 54.7 37 56.8
MD13G1082500 Malus domestica HOM05D000777 ORTHO05D000595 6.6e-06 54.7 37 56.8
SEGI_16612 Sequoiadendron giganteum HOM05D000777 ORTHO05D000595 6.6e-06 54.7 37 62.2
Thecc.02G235900 Theobroma cacao HOM05D000777 ORTHO05D000595 6.6e-06 54.7 38 57.9
ATR0665G177 Amborella trichopoda HOM05D000777 ORTHO05D000595 8.7e-06 54.3 35 60.0
Aqoxy3G03206 Aquilegia oxysepala HOM05D000777 ORTHO05D000595 8.7e-06 54.3 36 61.1
MELO3C002223.2 Cucumis melo HOM05D000777 ORTHO05D000595 8.7e-06 54.3 36 58.3
MELO3C012047.2 Cucumis melo HOM05D000777 ORTHO05D000595 8.7e-06 54.3 43 55.8
CsaV3_5G032120 Cucumis sativus L. HOM05D000777 ORTHO05D000595 8.7e-06 54.3 43 58.1
Duzib251G0265 Durio zibethinus HOM05D000777 ORTHO05D000595 8.7e-06 54.3 38 57.9
Prupe.1G264500 Prunus persica HOM05D000777 ORTHO05D000595 8.7e-06 54.3 37 59.5


User provided reference genes

Program Settings