Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 4.8e-129 464.5 239 100.0
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 2.8e-76 289.3 164 90.9
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 4.7e-76 288.5 199 77.4
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 2.9e-73 279.3 180 83.9
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 6.4e-73 278.1 162 87.0
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.3e-73 277.7 177 80.8
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 8.3e-73 277.7 177 80.8
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 3.2e-72 275.8 164 82.9
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 4.1e-72 275.4 199 74.4
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 4.1e-72 275.4 164 84.1
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 5.4e-72 275.0 164 83.5
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 7.0e-72 274.6 164 83.5
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.2e-71 273.9 164 84.8
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 1.2e-71 273.9 164 84.1
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.2e-71 273.9 164 83.5
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-71 273.9 164 83.5
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-71 273.9 164 83.5
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 2.0e-71 273.1 164 83.5
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 2.7e-71 272.7 164 85.4
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 2.7e-71 272.7 164 82.9
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 4.6e-71 271.9 164 85.4
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 4.6e-71 271.9 161 83.9
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 6.0e-71 271.6 199 71.4
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 1.0e-70 270.8 161 84.5
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 1.3e-70 270.4 164 82.9
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 1.3e-70 270.4 161 83.9
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 1.7e-70 270.0 164 82.9
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 3.0e-70 269.2 164 84.8
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.0e-70 269.2 164 82.3
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 6.6e-70 268.1 164 82.9
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 6.6e-70 268.1 164 81.1
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 6.6e-70 268.1 174 80.5
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 8.6e-70 267.7 164 81.7
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 8.6e-70 267.7 161 85.7
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.1e-69 267.3 161 83.2
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 1.1e-69 267.3 161 83.9
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 1.5e-69 266.9 160 85.6
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.5e-69 266.9 163 80.4
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 1.5e-69 266.9 164 82.3
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.5e-69 266.9 164 82.3
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 1.9e-69 266.5 164 83.5
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 3.3e-69 265.8 163 81.6
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 4.3e-69 265.4 164 81.7
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 4.3e-69 265.4 161 81.4
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 5.6e-69 265.0 164 82.9
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 5.6e-69 265.0 164 81.7
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 5.6e-69 265.0 163 80.4
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 7.3e-69 264.6 161 82.0
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 9.5e-69 264.2 164 80.5
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 9.5e-69 264.2 164 81.1
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 1.2e-68 263.8 161 82.6
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 1.2e-68 263.8 256 60.2
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.2e-68 263.8 161 80.7
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.6e-68 263.5 164 82.9
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 1.6e-68 263.5 161 80.7
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.6e-68 263.5 164 81.1
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.6e-68 263.5 164 81.1
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 1.6e-68 263.5 161 81.4
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 1.6e-68 263.5 164 82.3
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 2.8e-68 262.7 161 82.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 2.8e-68 262.7 161 80.7
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 3.6e-68 262.3 164 82.3
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 4.7e-68 261.9 162 80.9
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 4.7e-68 261.9 161 79.5
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.2e-68 261.5 162 80.2
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 8.0e-68 261.2 161 80.1
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 1.1e-67 260.8 161 80.7
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.1e-67 260.8 161 82.0
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 1.4e-67 260.4 200 70.0
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 1.4e-67 260.4 161 80.7
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 3.1e-67 259.2 161 80.7
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 5.2e-67 258.5 164 79.9
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 5.2e-67 258.5 161 80.1
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 5.2e-67 258.5 164 79.3
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 5.2e-67 258.5 164 80.5
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 5.2e-67 258.5 164 80.5
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 5.2e-67 258.5 161 80.7
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 1.2e-66 257.3 175 77.1
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 1.2e-66 257.3 164 81.1
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 2.0e-66 256.5 164 78.7
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 2.0e-66 256.5 205 68.8
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 2.0e-66 256.5 205 68.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 4.4e-66 255.4 205 68.3
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-66 255.4 205 68.3
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 4.4e-66 255.4 205 68.3
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 7.5e-66 254.6 205 68.3
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 9.8e-66 254.2 164 78.7
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-65 253.8 164 78.7
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-65 253.8 164 78.7
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 1.3e-65 253.8 164 78.7
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.7e-65 253.4 164 78.7
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.7e-65 253.4 164 78.0
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 1.7e-65 253.4 164 78.0
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.2e-65 253.1 165 79.4
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 2.9e-65 252.7 164 78.7
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.9e-65 252.7 161 78.3
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 3.7e-65 252.3 164 78.0
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 8.3e-65 251.1 168 76.8
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 3.2e-64 249.2 164 77.4
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 4.1e-64 248.8 158 82.3
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 5.4e-64 248.4 164 76.8
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.4e-64 248.4 162 76.5
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 9.2e-64 247.7 164 76.2
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 1.2e-63 247.3 170 75.3
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 1.6e-63 246.9 164 75.6
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.3e-62 243.8 164 75.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.7e-62 243.4 192 69.3
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 2.3e-62 243.0 164 75.0
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 3.3e-61 239.2 170 76.5
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 3.3e-61 239.2 199 65.3
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.3e-61 238.8 164 72.6
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 4.7e-60 235.3 164 71.3
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 8.1e-60 234.6 143 82.5
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 1.1e-59 234.2 161 73.3
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 6.8e-59 231.5 161 69.6
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 1.2e-58 230.7 164 74.4
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 2.0e-58 229.9 140 81.4
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.7e-57 226.9 162 69.1
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 4.9e-57 225.3 164 68.9
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 1.6e-55 220.3 142 76.1
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 2.5e-53 213.0 162 63.0
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 1.2e-52 210.7 162 63.0
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 1.6e-52 210.3 161 64.6
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 2.4e-51 206.5 162 62.3
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 4.0e-51 205.7 169 63.9
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 5.2e-51 205.3 135 76.3
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 6.8e-51 204.9 164 61.0
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-50 204.1 169 63.3
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.5e-50 203.8 162 61.7
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 4.4e-50 202.2 162 61.7
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 8.4e-49 198.0 169 62.1
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.9e-48 196.8 131 76.3
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 7.1e-48 194.9 145 70.3
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 3.5e-47 192.6 136 76.5
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 4.6e-47 192.2 144 69.4
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.0e-46 191.0 119 81.5
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 1.3e-46 190.7 166 62.0
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 1.3e-46 190.7 162 63.6
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 1.2e-44 184.1 159 56.6
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 6.2e-44 181.8 131 71.0
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.4e-43 179.9 156 57.1
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.6e-42 176.4 165 61.8
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.8e-42 175.3 148 62.2
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 2.2e-41 173.3 161 60.9
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.4e-40 169.9 138 62.3
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 2.4e-40 169.9 96 89.6
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.2e-40 169.1 102 82.4
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 5.4e-40 168.7 156 60.3
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 1.2e-39 167.5 109 78.0
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.6e-39 167.2 130 66.9
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 3.0e-38 162.9 120 71.7
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 5.1e-38 162.2 156 55.1
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 6.6e-38 161.8 161 55.9
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 1.5e-37 160.6 179 54.7
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 3.3e-37 159.5 139 59.7
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.3e-37 159.5 119 72.3
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.5e-34 150.6 90 87.8
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 5.4e-32 142.1 153 49.0
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 3.9e-30 136.0 117 62.4
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 8.4e-25 118.2 73 86.3
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 4.5e-18 95.9 152 37.5
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 3.8e-17 92.8 52 90.4
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 4.9e-17 92.4 52 88.5
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 4.9e-17 92.4 52 88.5
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 6.5e-17 92.0 59 78.0
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-16 91.3 52 88.5
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.4e-16 90.9 160 36.9
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.9e-16 90.5 74 62.2
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 2.5e-16 90.1 52 88.5
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 9.3e-16 88.2 69 62.3
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 2.7e-15 86.7 50 86.0
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.0e-14 84.7 58 69.0
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 1.0e-14 84.7 71 66.2
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.5e-13 80.1 157 32.5
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 1.3e-12 77.8 53 67.9
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.9e-08 63.9 40 80.0


User provided reference genes

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