Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 1.1e-84 316.6 160 100.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.2e-67 260.0 161 83.2
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.2e-60 235.3 162 75.9
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 2.3e-55 219.2 159 71.1
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.7e-51 205.7 166 66.9
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.3e-50 202.6 166 65.7
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.5e-49 199.1 162 64.8
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.3e-49 198.4 166 65.7
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.3e-49 198.4 164 65.2
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 4.7e-48 194.9 166 63.3
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.3e-45 186.8 237 47.7
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 6.4e-45 184.5 160 63.1
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 9.2e-44 180.6 163 62.0
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.6e-43 178.3 163 59.5
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 7.8e-43 177.6 174 54.6
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.1e-41 173.7 194 53.6
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.9e-41 172.9 162 58.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 7.3e-41 171.0 167 57.5
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.2e-40 170.2 162 60.5
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 1.8e-39 166.4 160 56.9
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 5.3e-39 164.9 166 57.2
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 9.0e-39 164.1 164 57.9
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.2e-38 163.7 161 56.5
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 9.9e-38 160.6 165 56.4
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.3e-37 160.2 206 47.1
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.2e-37 159.5 170 55.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 3.8e-37 158.7 165 54.5
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.8e-37 158.7 165 54.5
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 8.4e-37 157.5 165 55.2
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.4e-36 156.0 166 54.8
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.4e-36 156.0 164 55.5
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.2e-36 155.6 165 53.3
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.2e-36 155.2 170 53.5
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 5.4e-36 154.8 163 54.6
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 5.4e-36 154.8 165 53.3
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 7.1e-36 154.5 171 55.6
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 7.1e-36 154.5 160 53.8
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 2.1e-35 152.9 146 59.6
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.5e-35 152.1 165 52.7
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.5e-35 152.1 165 52.7
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 7.8e-35 151.0 173 53.2
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.7e-34 149.8 171 53.2
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.7e-34 149.8 171 53.8
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 3.9e-34 148.7 166 54.2
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 5.1e-34 148.3 163 51.5
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 8.7e-34 147.5 165 51.5
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.1e-33 147.1 162 50.6
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.5e-33 146.7 164 53.0
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.5e-33 146.7 167 51.5
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.5e-33 146.7 166 51.8
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 3.3e-33 145.6 164 51.2
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 3.3e-33 145.6 166 51.8
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 4.3e-33 145.2 168 49.4
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 4.3e-33 145.2 164 51.8
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.3e-33 145.2 166 53.0
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 4.3e-33 145.2 166 53.0
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.3e-32 143.7 163 52.1
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.3e-32 143.7 165 52.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 2.8e-32 142.5 162 51.9
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 2.8e-32 142.5 166 51.2
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 4.8e-32 141.7 163 50.3
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 6.2e-32 141.4 165 52.1
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 6.2e-32 141.4 165 52.1
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.1e-31 140.6 168 52.4
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.4e-31 140.2 170 47.6
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 3.1e-31 139.0 170 48.2
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 5.3e-31 138.3 166 50.0
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 5.3e-31 138.3 159 50.3
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.5e-30 136.7 166 50.0
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.5e-30 136.7 163 50.3
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.5e-30 136.7 174 48.3
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.5e-30 136.7 219 42.5
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.6e-30 136.0 174 47.7
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 3.4e-30 135.6 193 44.6
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 3.4e-30 135.6 174 48.3
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 5.8e-30 134.8 158 50.0
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 5.8e-30 134.8 158 50.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 9.9e-30 134.0 179 44.7
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 4.9e-29 131.7 164 47.6
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 6.4e-29 131.3 165 49.7
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 6.4e-29 131.3 162 48.1
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.1e-28 130.6 181 48.1
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.1e-28 130.6 180 43.9
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.1e-28 130.6 172 48.3
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.1e-28 130.6 192 43.8
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.4e-28 130.2 163 49.7
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.4e-28 130.2 163 47.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.4e-28 130.2 164 45.1
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.4e-28 129.4 164 47.6
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 4.2e-28 128.6 164 46.3
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.6e-27 126.7 160 48.1
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.1e-27 126.3 165 46.7
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 6.0e-27 124.8 159 49.7
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 7.9e-27 124.4 162 48.1
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 3.9e-26 122.1 174 45.4
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 5.1e-26 121.7 165 45.5
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 6.7e-26 121.3 164 48.2
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 8.7e-26 120.9 265 36.6
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.5e-25 120.2 165 45.5
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 1.5e-25 120.2 172 44.2
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 2.5e-25 119.4 162 45.1
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.3e-25 119.0 164 43.9
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 4.3e-25 118.6 198 39.9
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 7.4e-25 117.9 165 45.5
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 9.6e-25 117.5 165 45.5
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 9.6e-25 117.5 145 48.3
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.3e-24 117.1 171 42.7
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.3e-24 117.1 164 44.5
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.6e-24 116.7 161 44.7
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.6e-24 116.7 161 44.7
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 3.7e-24 115.5 164 44.5
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 3.7e-24 115.5 159 44.7
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 6.2e-24 114.8 161 44.1
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 6.2e-24 114.8 165 41.2
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.1e-24 114.4 165 43.6
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 8.1e-24 114.4 161 44.7
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.1e-23 114.0 161 44.1
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.8e-23 113.2 280 34.6
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.2e-22 110.5 161 43.5
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.5e-22 110.2 164 46.3
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.6e-22 109.4 199 39.2
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 4.5e-22 108.6 165 42.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.2e-21 106.3 176 41.5
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.4e-20 103.6 174 38.5
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.9e-20 103.2 129 47.3
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.5e-20 102.8 161 41.6
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 6.9e-15 84.7 151 38.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 5.8e-14 81.6 163 33.7
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 7.1e-12 74.7 120 41.7
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.2e-11 73.9 69 56.5
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 2.1e-11 73.2 167 35.3
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.9e-09 66.6 173 34.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.9e-09 66.6 105 40.0
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 2.5e-09 66.2 176 32.4
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 3.3e-09 65.9 44 72.7
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 4.3e-09 65.5 161 34.8
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 5.7e-09 65.1 175 33.1
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 9.7e-09 64.3 82 46.3
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 6.3e-08 61.6 157 33.1
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.4e-07 59.7 44 63.6
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 3.1e-07 59.3 75 48.0
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 5.3e-07 58.5 47 59.6
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 7.7e-06 54.7 52 53.8


User provided reference genes

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