Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 3.0e-134 481.9 250 100.0
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.0e-113 413.7 236 91.5
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 4.9e-100 368.2 235 80.4
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 7.3e-96 354.4 236 79.7
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 9.5e-96 354.0 231 80.1
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 3.4e-93 345.5 234 77.8
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.7e-92 343.2 235 76.2
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 7.1e-91 337.8 238 77.3
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 6.6e-89 331.3 239 71.5
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.1e-87 326.2 235 72.8
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 2.8e-87 325.9 235 72.3
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 4.7e-87 325.1 229 75.1
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.4e-86 323.6 245 69.8
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 3.1e-86 322.4 235 71.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 8.9e-86 320.9 243 70.8
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 8.9e-86 320.9 235 72.3
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 2.6e-85 319.3 240 71.2
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.4e-85 318.9 239 72.4
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 3.4e-85 318.9 233 73.0
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 7.6e-85 317.8 204 79.9
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 9.9e-85 317.4 245 70.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 1.3e-84 317.0 204 79.9
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 2.2e-84 316.2 235 73.2
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 3.8e-84 315.5 235 69.8
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.4e-83 313.5 233 70.0
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.4e-83 313.5 234 71.8
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.4e-83 313.5 238 68.1
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 3.2e-83 312.4 236 70.8
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 7.1e-83 311.2 236 70.3
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 9.3e-83 310.8 239 67.8
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 9.3e-83 310.8 235 69.8
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.2e-82 310.5 235 69.4
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.6e-82 310.1 237 70.5
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 3.5e-82 308.9 236 71.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 4.6e-82 308.5 238 68.9
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 4.6e-82 308.5 238 69.3
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 4.6e-82 308.5 238 70.6
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 6.0e-82 308.1 234 67.9
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.0e-81 307.4 222 74.3
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.3e-81 307.0 237 69.6
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.7e-81 306.6 247 68.4
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.7e-81 306.6 233 73.0
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 2.3e-81 306.2 232 70.3
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 2.3e-81 306.2 222 73.9
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.0e-81 305.8 256 66.4
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 3.9e-81 305.4 237 69.6
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.9e-81 305.4 238 68.5
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 5.1e-81 305.1 235 68.9
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 8.7e-81 304.3 240 66.7
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 8.7e-81 304.3 234 69.2
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 8.7e-81 304.3 200 76.5
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 1.1e-80 303.9 234 68.8
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 1.5e-80 303.5 238 68.1
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 1.5e-80 303.5 238 68.1
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.5e-80 303.5 237 67.9
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.9e-80 303.1 238 68.1
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 7.3e-80 301.2 237 69.2
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 9.6e-80 300.8 237 68.8
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 9.6e-80 300.8 237 68.8
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 9.6e-80 300.8 237 68.8
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 9.6e-80 300.8 237 69.2
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.3e-79 300.4 237 68.8
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.6e-79 300.1 204 76.0
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 2.1e-79 299.7 238 68.1
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 8.1e-79 297.7 233 67.4
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 1.4e-78 297.0 239 66.5
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.8e-78 296.6 239 66.9
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.8e-78 296.6 238 67.2
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.8e-78 296.6 239 67.8
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 2.4e-78 296.2 232 66.4
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 5.3e-78 295.0 236 67.8
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 6.9e-78 294.7 212 73.1
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 9.0e-78 294.3 232 66.4
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-76 290.0 239 65.7
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-76 290.0 238 66.8
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 1.7e-76 290.0 195 76.9
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.2e-76 289.7 208 72.1
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.9e-75 286.6 246 67.5
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 3.2e-75 285.8 241 65.1
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 4.2e-75 285.4 241 66.0
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 4.2e-75 285.4 233 67.8
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 5.4e-75 285.0 241 66.0
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 9.3e-75 284.3 199 74.9
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.2e-74 283.9 233 64.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 3.5e-74 282.3 243 66.3
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 3.5e-74 282.3 243 66.3
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 7.9e-74 281.2 249 62.7
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 7.9e-74 281.2 252 61.9
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.8e-73 280.0 233 67.0
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 5.1e-73 278.5 246 65.4
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.9e-72 276.6 206 69.9
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 3.3e-72 275.8 201 69.2
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 4.3e-72 275.4 247 65.2
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 6.2e-71 271.6 227 66.1
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 6.2e-71 271.6 194 72.2
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.4e-70 270.4 190 73.7
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 5.3e-70 268.5 237 64.6
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 6.9e-70 268.1 240 62.5
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.9e-70 268.1 244 63.9
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.6e-69 266.2 236 63.6
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 9.9e-69 264.2 239 64.0
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.4e-68 261.5 263 59.3
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.4e-68 261.2 244 62.3
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.6e-66 256.9 235 58.7
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.0e-65 254.2 237 58.2
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.0e-65 254.2 203 67.5
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.9e-65 252.3 203 67.5
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 6.7e-65 251.5 201 68.7
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 6.7e-65 251.5 217 63.1
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.1e-64 250.8 203 66.5
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.1e-63 246.5 209 63.2
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.1e-63 246.5 224 58.5
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 2.8e-63 246.1 209 62.7
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.7e-63 245.7 223 58.3
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 8.1e-63 244.6 264 55.7
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.4e-62 243.8 235 59.1
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 5.3e-62 241.9 233 59.7
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 9.0e-62 241.1 192 64.6
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.5e-61 240.4 260 55.8
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.6e-61 239.6 227 58.1
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.8e-60 235.7 172 71.5
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 4.9e-60 235.3 267 51.7
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 4.2e-59 232.3 224 58.0
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 7.1e-59 231.5 162 73.5
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 7.1e-59 231.5 162 73.5
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 7.1e-59 231.5 162 73.5
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 2.1e-58 229.9 228 55.7
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.6e-58 228.8 198 61.6
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.5e-56 223.0 162 72.8
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 3.1e-54 216.1 226 55.3
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 5.3e-54 215.3 148 75.7
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.5e-48 196.4 171 63.7
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 3.3e-48 196.1 128 80.5
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.3e-47 194.1 197 56.3
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 6.9e-46 188.3 235 46.4
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 2.6e-45 186.4 212 50.5
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 7.7e-45 184.9 183 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 9.4e-43 177.9 200 49.5
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.1e-42 176.8 186 52.7
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 2.3e-41 173.3 164 56.1
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 5.1e-41 172.2 194 50.0
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 7.4e-40 168.3 202 49.0
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 3.1e-38 162.9 115 73.9
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 2.6e-37 159.8 121 68.6
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.6e-37 159.8 190 51.6
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 3.8e-36 156.0 208 46.6
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 1.1e-35 154.5 97 83.5
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 2.1e-34 150.2 96 85.4
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.3e-31 138.7 200 42.5
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 4.5e-29 132.5 114 63.2
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.7e-23 112.8 93 59.1
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 2.9e-20 103.2 90 56.7
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 3.2e-19 99.8 111 54.1
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 5.5e-19 99.0 82 58.5
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 5.2e-17 92.4 119 46.2
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.6e-13 80.9 144 43.8
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.8e-09 65.5 122 38.5
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.5e-08 64.3 63 61.9
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 1.1e-06 58.2 123 32.5
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 2.4e-06 57.0 87 40.2


User provided reference genes

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