Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 1.5e-156 556.2 302 100.0
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.5e-116 423.3 255 85.9
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.4e-116 422.2 255 85.5
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 1.6e-113 413.3 246 82.9
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.7e-111 404.8 310 71.0
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 7.4e-111 404.4 310 71.0
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 9.7e-111 404.1 297 71.4
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 1.3e-110 403.7 277 74.0
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 2.2e-110 402.9 255 78.0
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 4.8e-110 401.7 305 71.5
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 6.3e-110 401.4 301 69.4
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 8.2e-110 401.0 236 85.6
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.4e-109 399.4 294 72.4
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 9.1e-109 397.5 303 71.0
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.5e-108 396.7 246 79.3
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 3.5e-108 395.6 238 80.3
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 2.2e-107 392.9 292 70.9
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 2.9e-107 392.5 257 74.7
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 2.9e-107 392.5 246 78.9
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 3.8e-107 392.1 334 66.5
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 8.5e-107 391.0 243 80.2
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 8.5e-107 391.0 256 77.3
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.1e-106 390.6 240 80.8
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 1.5e-106 390.2 245 78.4
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 4.2e-106 388.7 257 74.3
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 7.2e-106 387.9 249 78.3
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 1.6e-105 386.7 245 77.6
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 3.6e-105 385.6 248 77.4
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 4.7e-105 385.2 238 79.8
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 4.7e-105 385.2 238 80.3
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 3.0e-104 382.5 293 68.9
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 5.2e-104 381.7 305 65.6
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 6.7e-104 381.3 289 68.2
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 8.8e-104 380.9 246 75.6
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 1.1e-103 380.6 244 78.7
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.1e-103 380.6 246 75.2
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.5e-103 380.2 239 77.8
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.0e-103 379.8 276 70.7
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 9.7e-103 377.5 278 69.4
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 1.7e-102 376.7 243 77.4
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 3.7e-102 375.6 296 66.2
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 6.3e-102 374.8 248 74.2
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 6.3e-102 374.8 292 65.8
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.4e-101 373.6 245 73.1
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 1.8e-101 373.2 244 74.6
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.8e-101 373.2 289 67.8
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 4.1e-101 372.1 247 74.5
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 7.0e-101 371.3 244 74.6
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 7.0e-101 371.3 244 75.0
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 9.1e-101 370.9 277 68.6
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.2e-100 370.5 238 75.6
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 1.2e-100 370.5 248 75.4
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.6e-100 370.2 244 74.2
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 1.6e-100 370.2 242 76.9
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 2.0e-100 369.8 288 66.7
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 3.5e-100 369.0 289 66.8
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 3.5e-100 369.0 276 67.0
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.5e-100 369.0 239 77.4
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 4.5e-100 368.6 242 76.4
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 7.7e-100 367.9 240 75.4
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 1.3e-99 367.1 288 67.7
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.3e-99 367.1 248 73.0
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 2.2e-99 366.3 239 75.7
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.9e-99 365.9 251 73.7
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 3.8e-99 365.5 274 69.0
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 3.8e-99 365.5 234 77.4
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 3.8e-99 365.5 244 75.4
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 3.8e-99 365.5 249 73.5
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 5.0e-99 365.2 239 74.9
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 5.0e-99 365.2 273 68.5
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 5.0e-99 365.2 273 68.5
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.5e-98 363.6 274 68.6
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 1.5e-98 363.6 238 76.1
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 3.2e-98 362.5 230 76.1
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 5.5e-98 361.7 246 72.0
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 9.4e-98 360.9 241 73.9
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 9.4e-98 360.9 248 72.2
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 1.2e-97 360.5 291 66.3
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 1.6e-97 360.1 238 73.9
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 1.6e-97 360.1 250 71.2
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 2.7e-97 359.4 244 72.1
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 1.0e-96 357.5 276 65.9
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.4e-96 357.1 230 74.8
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 6.8e-96 354.8 239 72.8
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.5e-95 353.6 223 75.3
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 7.5e-95 351.3 281 61.9
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 3.7e-94 349.0 237 73.4
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 4.8e-94 348.6 234 73.1
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 5.9e-92 341.7 239 70.7
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 1.1e-90 337.4 298 62.4
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 2.3e-88 329.7 212 77.8
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 5.7e-87 325.1 290 58.6
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 2.8e-86 322.8 215 75.8
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 3.7e-86 322.4 271 64.6
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 1.2e-84 317.4 241 66.4
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 5.9e-84 315.1 201 79.6
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 5.0e-83 312.0 223 68.2
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 8.6e-83 311.2 232 70.7
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 7.2e-82 308.1 226 66.4
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 1.0e-80 304.3 249 61.0
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 6.8e-80 301.6 230 62.6
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 5.7e-79 298.5 209 68.9
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.3e-78 297.4 248 61.7
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 1.6e-76 290.4 177 83.1
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 3.3e-74 282.7 204 69.6
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 2.0e-71 273.5 230 59.6
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 5.6e-66 255.4 250 56.0
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 2.6e-63 246.5 145 79.3
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 4.0e-48 196.1 150 66.7
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 2.4e-45 186.8 216 46.8
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 5.4e-45 185.7 223 46.6
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 2.6e-39 166.8 214 42.5
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.9e-37 160.6 120 65.8
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 3.1e-32 143.3 83 81.9
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.5e-31 141.0 137 56.9
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 3.8e-22 109.8 56 92.9
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 4.2e-21 106.3 82 59.8
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 1.0e-19 101.7 61 78.7
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 6.7e-19 99.0 68 63.2
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 8.7e-19 98.6 108 51.9
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.5e-18 97.8 171 40.4
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 8.2e-17 92.0 64 68.8
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 5.3e-16 89.4 170 38.8
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 3.4e-15 86.7 63 60.3
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 2.2e-14 84.0 58 70.7
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 3.8e-14 83.2 51 76.5
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 5.0e-14 82.8 60 66.7
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 5.5e-13 79.3 49 75.5
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.6e-12 77.8 103 43.7
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 6.1e-12 75.9 53 67.9
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 1.3e-11 74.7 44 77.3
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 4.8e-09 66.2 82 46.3
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 8.2e-09 65.5 43 67.4


User provided reference genes

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