Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03751 Davidia involucrata HOM05D000150 ORTHO05D000108 5.7e-39 163.7 78 100.0
Dinv24905 Davidia involucrata HOM05D000150 ORTHO05D000108 6.6e-19 97.1 62 75.8
Dinv31113 Davidia involucrata HOM05D000150 ORTHO05D000108 8.0e-17 90.1 64 65.6
GSVIVG01020177001 Vitis vinifera HOM05D000150 ORTHO05D000108 1.0e-16 89.7 62 66.1
TAR629G0002 Trochodendron aralioides HOM05D000150 ORTHO05D000108 1.4e-16 89.4 62 62.9
QL03p062770 Quercus lobata HOM05D000150 ORTHO05D000108 8.9e-16 86.7 62 64.5
Cfa009100 Carpinus fangiana HOM05D000150 ORTHO05D000108 1.2e-15 86.3 62 62.9
QL03p066829 Quercus lobata HOM05D000150 ORTHO05D000108 1.5e-15 85.9 62 62.9
Ciclev10031201m.g Citrus clementina HOM05D000150 ORTHO05D000108 3.4e-15 84.7 62 64.5
Haze_12104 Corylus avellana HOM05D000150 ORTHO05D000108 3.4e-15 84.7 62 62.9
Prupe.1G260100 Prunus persica HOM05D000150 ORTHO05D000108 7.5e-15 83.6 63 60.3
QL03p066769 Quercus lobata HOM05D000150 ORTHO05D000108 7.5e-15 83.6 62 62.9
Rhsim12G0050300 Rhododendron simsii HOM05D000150 ORTHO05D000108 7.5e-15 83.6 64 59.4
vmacro01198 Vaccinium macrocarpon HOM05D000150 ORTHO05D000108 7.5e-15 83.6 63 60.3
CSS0049652 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 1.3e-14 82.8 67 55.2
Rhsim12G0050400 Rhododendron simsii HOM05D000150 ORTHO05D000108 2.2e-14 82.0 62 59.7
MD16G1086300 Malus domestica HOM05D000150 ORTHO05D000108 3.7e-14 81.3 61 63.9
Cc11_g14210 Coffea canephora HOM05D000150 ORTHO05D000108 4.9e-14 80.9 62 61.3
CiPaw.05G146200 Carya illinoinensis HOM05D000150 ORTHO05D000108 6.3e-14 80.5 62 64.5
Atru.chr11.1958 Acer truncatum HOM05D000150 ORTHO05D000108 8.3e-14 80.1 62 62.9
Gohir.A05G319100 Gossypium hirsutum HOM05D000150 ORTHO05D000108 8.3e-14 80.1 59 62.7
Lju50A24T52 Lonicera japonica HOM05D000150 ORTHO05D000108 8.3e-14 80.1 62 61.3
Gohir.D05G321300 Gossypium hirsutum HOM05D000150 ORTHO05D000108 2.4e-13 78.6 59 61.0
Gorai.009G344800 Gossypium raimondii HOM05D000150 ORTHO05D000108 2.4e-13 78.6 59 61.0
CSS0039820 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 3.2e-13 78.2 62 59.7
Thecc.02G242200 Theobroma cacao HOM05D000150 ORTHO05D000108 9.2e-13 76.6 59 57.6
HanXRQChr15g0476621 Helianthus annuus HOM05D000150 ORTHO05D000108 2.0e-12 75.5 67 49.3
CSS0016698 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 2.7e-12 75.1 61 50.8
CSS0027481 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 2.7e-12 75.1 61 50.8
CSS0031957 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 2.7e-12 75.1 61 50.8
Gohir.D10G156045 Gossypium hirsutum HOM05D000150 ORTHO05D000108 3.5e-12 74.7 59 59.3
Lj2g0002776 Lotus japonicus HOM05D000150 ORTHO05D000108 3.5e-12 74.7 64 53.1
Duzib248G1663 Durio zibethinus HOM05D000150 ORTHO05D000108 4.6e-12 74.3 59 61.0
Lalb_Chr16g0382481 Lupinus albus HOM05D000150 ORTHO05D000108 4.6e-12 74.3 63 55.6
arahy.Tifrunner.gnm1.ann1.IAPX52 Arachis hypogaea HOM05D000150 ORTHO05D000108 5.9e-12 73.9 65 53.8
arahy.Tifrunner.gnm1.ann1.X4ZQ0T Arachis hypogaea HOM05D000150 ORTHO05D000108 5.9e-12 73.9 65 53.8
Lj6C801G3 Lonicera japonica HOM05D000150 ORTHO05D000108 5.9e-12 73.9 60 60.0
Duzib268G1344 Durio zibethinus HOM05D000150 ORTHO05D000108 7.8e-12 73.6 56 60.7
Gohir.D01G133300 Gossypium hirsutum HOM05D000150 ORTHO05D000108 7.8e-12 73.6 59 55.9
Gorai.002G164900 Gossypium raimondii HOM05D000150 ORTHO05D000108 7.8e-12 73.6 59 55.9
FvH4_4g35051 Fragaria vesca HOM05D000150 ORTHO05D000108 1.7e-11 72.4 59 55.9
FAN12G2289 Fragaria x ananassa HOM05D000150 ORTHO05D000108 1.7e-11 72.4 59 55.9
Psat2g114240 Pisum sativum HOM05D000150 ORTHO05D000108 2.3e-11 72.0 64 51.6
Lsat_1_v5_gn_3_49640 Lactuca sativa HOM05D000150 ORTHO05D000108 2.9e-11 71.6 64 53.1
CANSAT01G0622 Cannabis sativa HOM05D000150 ORTHO05D000108 3.9e-11 71.2 63 52.4
Medtr5g035560 Medicago truncatula HOM05D000150 ORTHO05D000108 3.9e-11 71.2 64 50.0
FAN17G0029 Fragaria x ananassa HOM05D000150 ORTHO05D000108 5.0e-11 70.9 59 55.9
RcHm_v2.0_Chr4g0444591 Rosa chinensis HOM05D000150 ORTHO05D000108 5.0e-11 70.9 61 54.1
Migut.L01449 Erythranthe guttata HOM05D000150 ORTHO05D000108 6.6e-11 70.5 62 53.2
Eucgr.B02563 Eucalyptus grandis HOM05D000150 ORTHO05D000108 6.6e-11 70.5 65 55.4
HanXRQChr15g0476631 Helianthus annuus HOM05D000150 ORTHO05D000108 6.6e-11 70.5 64 48.4
Medtr5g035580 Medicago truncatula HOM05D000150 ORTHO05D000108 6.6e-11 70.5 62 51.6
FAN22G0665 Fragaria x ananassa HOM05D000150 ORTHO05D000108 8.6e-11 70.1 59 55.9
Manes.01G196500 Manihot esculenta HOM05D000150 ORTHO05D000108 1.1e-10 69.7 63 57.1
TPR.G13511 Trifolium pratense HOM05D000150 ORTHO05D000108 1.5e-10 69.3 64 50.0
RcHm_v2.0_Chr4g0444641 Rosa chinensis HOM05D000150 ORTHO05D000108 1.9e-10 68.9 59 54.2
Manes.05G091100 Manihot esculenta HOM05D000150 ORTHO05D000108 3.3e-10 68.2 63 55.6
Oeu001656.1 Olea europaea HOM05D000150 ORTHO05D000108 3.3e-10 68.2 62 51.6
Glyma.02G029900 Glycine max HOM05D000150 ORTHO05D000108 4.3e-10 67.8 64 51.6
TWI81G0593 Tripterygium wilfordii HOM05D000150 ORTHO05D000108 5.6e-10 67.4 63 49.2
MBI07_g39647_MAGBIO Magnolia biondii HOM05D000150 ORTHO05D000108 7.3e-10 67.0 64 50.0
RcHm_v2.0_Chr7g0179611 Rosa chinensis HOM05D000150 ORTHO05D000108 7.3e-10 67.0 73 47.9
COL.COLO4_37896 Corchorus olitorius HOM05D000150 ORTHO05D000108 9.5e-10 66.6 59 54.2
VMungo1215G0954 Vigna mungo HOM05D000150 ORTHO05D000108 9.5e-10 66.6 64 51.6
Glyma.01G036000 Glycine max HOM05D000150 ORTHO05D000108 1.2e-09 66.2 64 51.6
SalBow2G3328 Salvia bowleyana HOM05D000150 ORTHO05D000108 1.2e-09 66.2 60 51.7
PGSC0003DMG400015579 Solanum tuberosum HOM05D000150 ORTHO05D000108 1.2e-09 66.2 60 55.0
FvH4_4g35050 Fragaria vesca HOM05D000150 ORTHO05D000108 2.8e-09 65.1 62 50.0
PGSC0003DMG400015601 Solanum tuberosum HOM05D000150 ORTHO05D000108 3.6e-09 64.7 60 53.3
FAN04G1025 Fragaria x ananassa HOM05D000150 ORTHO05D000108 4.7e-09 64.3 59 50.8
FAN18G0799 Fragaria x ananassa HOM05D000150 ORTHO05D000108 4.7e-09 64.3 59 50.8
Phvul.002G075200 Phaseolus vulgaris HOM05D000150 ORTHO05D000108 4.7e-09 64.3 64 48.4
Prupe.8G186100 Prunus persica HOM05D000150 ORTHO05D000108 4.7e-09 64.3 66 47.0
Gohir.A01G142101 Gossypium hirsutum HOM05D000150 ORTHO05D000108 6.2e-09 63.9 54 51.9
ECA246G2568 Erigeron canadensis HOM05D000150 ORTHO05D000108 8.0e-09 63.5 65 49.2
Ca_18092_v3 Cicer arietinum L. HOM05D000150 ORTHO05D000108 1.0e-08 63.2 57 52.6
Cc04_g13420 Coffea canephora HOM05D000150 ORTHO05D000108 1.0e-08 63.2 63 46.0
FvH4_5g16480 Fragaria vesca HOM05D000150 ORTHO05D000108 1.0e-08 63.2 59 49.2
MSTRG.7871 Avicennia marina HOM05D000150 ORTHO05D000108 1.4e-08 62.8 62 50.0
Dinv20692 Davidia involucrata HOM05D000150 ORTHO05D000108 1.4e-08 62.8 63 49.2
Nitab4.5_0000257g0180 Nicotiana tabacum HOM05D000150 ORTHO05D000108 2.3e-08 62.0 60 50.0
Eucgr.H00279 Eucalyptus grandis HOM05D000150 ORTHO05D000108 3.1e-08 61.6 65 44.6
Atru.chr9.2415 Acer truncatum HOM05D000150 ORTHO05D000108 4.0e-08 61.2 64 43.8
MBI07_g11498_MAGBIO Magnolia biondii HOM05D000150 ORTHO05D000108 4.0e-08 61.2 67 43.3
MBI07_g42375_MAGBIO Magnolia biondii HOM05D000150 ORTHO05D000108 5.2e-08 60.8 67 44.8
Manes.05G120300 Manihot esculenta HOM05D000150 ORTHO05D000108 5.2e-08 60.8 65 46.2
Peaxi162Scf00421g00826 Petunia axillaris HOM05D000150 ORTHO05D000108 5.2e-08 60.8 60 50.0
Prupe.5G178200 Prunus persica HOM05D000150 ORTHO05D000108 5.2e-08 60.8 64 46.9
Eucgr.K02352 Eucalyptus grandis HOM05D000150 ORTHO05D000108 6.8e-08 60.5 62 43.5
Manes.05G120400 Manihot esculenta HOM05D000150 ORTHO05D000108 6.8e-08 60.5 65 46.2
Sopen05g002160 Solanum pennellii HOM05D000150 ORTHO05D000108 8.9e-08 60.1 60 48.3
TAR365G0377 Trochodendron aralioides HOM05D000150 ORTHO05D000108 8.9e-08 60.1 66 42.4
Haze_11164 Corylus avellana HOM05D000150 ORTHO05D000108 1.2e-07 59.7 63 42.9
MBI07_g39645_MAGBIO Magnolia biondii HOM05D000150 ORTHO05D000108 1.2e-07 59.7 60 48.3
Nn1g09512 Nelumbo nucifera HOM05D000150 ORTHO05D000108 1.2e-07 59.7 72 44.4
TAR371G0777 Trochodendron aralioides HOM05D000150 ORTHO05D000108 1.2e-07 59.7 62 48.4
Eucgr.L03638 Eucalyptus grandis HOM05D000150 ORTHO05D000108 1.5e-07 59.3 62 46.8
SGA_v2.0_scaffold166G38338 Striga asiatica HOM05D000150 ORTHO05D000108 2.0e-07 58.9 63 44.4
CSS0030525 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 4.4e-07 57.8 66 39.4
Haze_10104 Corylus avellana HOM05D000150 ORTHO05D000108 5.8e-07 57.4 67 40.3
FAN08G2454 Fragaria x ananassa HOM05D000150 ORTHO05D000108 5.8e-07 57.4 50 58.0
Prupe.8G186200 Prunus persica HOM05D000150 ORTHO05D000108 5.8e-07 57.4 65 41.5
CSS0033516 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 7.5e-07 57.0 66 39.4
Eucgr.K02353 Eucalyptus grandis HOM05D000150 ORTHO05D000108 7.5e-07 57.0 62 41.9
Prupe.8G185900 Prunus persica HOM05D000150 ORTHO05D000108 7.5e-07 57.0 62 43.5
Manes.06G101500 Manihot esculenta HOM05D000150 ORTHO05D000108 9.8e-07 56.6 64 43.8
CiPaw.12G023700 Carya illinoinensis HOM05D000150 ORTHO05D000108 1.3e-06 56.2 64 43.8
RcHm_v2.0_Chr2g0084901 Rosa chinensis HOM05D000150 ORTHO05D000108 1.3e-06 56.2 80 37.5
vmacro14684 Vaccinium macrocarpon HOM05D000150 ORTHO05D000108 1.3e-06 56.2 59 49.2
arahy.Tifrunner.gnm1.ann1.LM1Q4V Arachis hypogaea HOM05D000150 ORTHO05D000108 1.7e-06 55.8 56 44.6
Nn1g09510 Nelumbo nucifera HOM05D000150 ORTHO05D000108 1.7e-06 55.8 71 36.6
Cc08_g06440 Coffea canephora HOM05D000150 ORTHO05D000108 2.2e-06 55.5 65 41.5
Haze_03514 Corylus avellana HOM05D000150 ORTHO05D000108 2.2e-06 55.5 69 39.1
PSO210G4637 Papaver somniferum HOM05D000150 ORTHO05D000108 2.2e-06 55.5 78 39.7
Aqoxy2G04170 Aquilegia oxysepala HOM05D000150 ORTHO05D000108 2.9e-06 55.1 74 37.8
MSTRG.9724 Avicennia marina HOM05D000150 ORTHO05D000108 2.9e-06 55.1 60 43.3
Haze_11165 Corylus avellana HOM05D000150 ORTHO05D000108 2.9e-06 55.1 61 45.9
Dinv33228 Davidia involucrata HOM05D000150 ORTHO05D000108 2.9e-06 55.1 69 39.1
Migut.G00840 Erythranthe guttata HOM05D000150 ORTHO05D000108 2.9e-06 55.1 59 44.1
QL02p019330 Quercus lobata HOM05D000150 ORTHO05D000108 2.9e-06 55.1 60 46.7
SGA_v2.0_scaffold27G11675 Striga asiatica HOM05D000150 ORTHO05D000108 2.9e-06 55.1 67 41.8
GSVIVG01007815001 Vitis vinifera HOM05D000150 ORTHO05D000108 2.9e-06 55.1 64 42.2
Cfa008491 Carpinus fangiana HOM05D000150 ORTHO05D000108 3.7e-06 54.7 63 42.9
Dinv28786 Davidia involucrata HOM05D000150 ORTHO05D000108 3.7e-06 54.7 59 45.8
QL10p058922 Quercus lobata HOM05D000150 ORTHO05D000108 3.7e-06 54.7 60 45.0
TWI38G0874 Tripterygium wilfordii HOM05D000150 ORTHO05D000108 3.7e-06 54.7 60 41.7
arahy.Tifrunner.gnm1.ann1.SU7DJD Arachis hypogaea HOM05D000150 ORTHO05D000108 4.9e-06 54.3 56 42.9
MSTRG.4311 Avicennia marina HOM05D000150 ORTHO05D000108 4.9e-06 54.3 54 48.1
Manes.01G017800 Manihot esculenta HOM05D000150 ORTHO05D000108 4.9e-06 54.3 63 44.4
Prupe.1G505100 Prunus persica HOM05D000150 ORTHO05D000108 4.9e-06 54.3 67 40.3
QL10p058904 Quercus lobata HOM05D000150 ORTHO05D000108 4.9e-06 54.3 60 46.7
QL10p059028 Quercus lobata HOM05D000150 ORTHO05D000108 4.9e-06 54.3 60 43.3
Thecc.03G005600 Theobroma cacao HOM05D000150 ORTHO05D000108 4.9e-06 54.3 64 42.2
ATR0743G166 Amborella trichopoda HOM05D000150 ORTHO05D000108 6.4e-06 53.9 72 41.7
Aqoxy6G02857 Aquilegia oxysepala HOM05D000150 ORTHO05D000108 6.4e-06 53.9 71 35.2
Cfa010594 Carpinus fangiana HOM05D000150 ORTHO05D000108 6.4e-06 53.9 67 38.8
CiPaw.01G230400 Carya illinoinensis HOM05D000150 ORTHO05D000108 6.4e-06 53.9 63 38.1
Ciclev10015149m.g Citrus clementina HOM05D000150 ORTHO05D000108 6.4e-06 53.9 57 45.6
Haze_03522 Corylus avellana HOM05D000150 ORTHO05D000108 6.4e-06 53.9 69 37.7
Haze_03523 Corylus avellana HOM05D000150 ORTHO05D000108 6.4e-06 53.9 69 37.7
Eucgr.K02875 Eucalyptus grandis HOM05D000150 ORTHO05D000108 6.4e-06 53.9 58 46.6
Lj1A276T64 Lonicera japonica HOM05D000150 ORTHO05D000108 6.4e-06 53.9 59 45.8
Lj1A276T65 Lonicera japonica HOM05D000150 ORTHO05D000108 6.4e-06 53.9 59 45.8
Prupe.8G186000 Prunus persica HOM05D000150 ORTHO05D000108 6.4e-06 53.9 62 41.9
Sed0022144 Sechium edule HOM05D000150 ORTHO05D000108 6.4e-06 53.9 63 41.3
CSS0034389 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 8.3e-06 53.5 60 46.7
CSS0042881 Camellia sinensis var. sinensis HOM05D000150 ORTHO05D000108 8.3e-06 53.5 60 46.7
Haze_03521 Corylus avellana HOM05D000150 ORTHO05D000108 8.3e-06 53.5 67 35.8
Haze_03524 Corylus avellana HOM05D000150 ORTHO05D000108 8.3e-06 53.5 64 40.6
Gohir.A03G017400 Gossypium hirsutum HOM05D000150 ORTHO05D000108 8.3e-06 53.5 61 44.3
Oeu018561.1 Olea europaea HOM05D000150 ORTHO05D000108 8.3e-06 53.5 66 43.9
PSO210G5429 Papaver somniferum HOM05D000150 ORTHO05D000108 8.3e-06 53.5 61 44.3


User provided reference genes

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