Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1932.9 978 100.0
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1406.0 873 82.9
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1384.0 876 80.6
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1374.8 876 81.8
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1343.2 847 80.4
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1315.4 924 74.4
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1313.9 847 78.9
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1309.7 850 78.0
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1303.1 849 78.2
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1298.9 849 77.7
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1298.1 847 79.1
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1294.3 847 77.8
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1290.0 847 77.9
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1288.9 878 75.3
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1284.6 849 77.1
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1284.2 855 76.7
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1282.7 860 75.3
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1280.0 847 76.6
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1275.8 873 75.4
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1273.5 860 75.3
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1264.2 847 75.1
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1261.9 847 74.9
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1261.9 861 75.5
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1256.1 887 74.0
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1255.4 852 74.6
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1248.0 850 74.7
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1245.3 847 75.2
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1238.4 855 74.7
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1236.9 791 78.9
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1234.9 900 70.4
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1231.5 849 74.1
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1228.8 839 74.9
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1226.1 848 74.5
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1222.6 887 71.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1220.3 850 72.6
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1216.1 861 72.6
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1215.7 849 74.0
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1213.0 859 73.8
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1207.6 1017 65.6
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1201.4 848 73.8
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1200.3 841 73.8
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1196.4 848 72.8
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1196.0 848 73.0
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1192.2 850 73.3
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1191.4 1011 64.0
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1191.4 841 73.0
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1189.9 849 71.1
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1183.7 859 72.6
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1182.2 852 71.9
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1179.9 849 72.2
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1178.7 883 70.8
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1174.5 849 71.5
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 0.0e+00 1172.9 850 71.3
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1160.6 869 69.3
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1148.7 837 71.4
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1146.7 863 71.4
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1122.1 919 63.9
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1115.1 847 68.2
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1111.7 849 66.9
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 0.0e+00 1108.2 761 74.2
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 0.0e+00 1107.0 853 68.2
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1104.4 855 65.6
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 0.0e+00 1098.2 699 80.4
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1097.4 849 66.0
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1097.4 849 65.5
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1097.4 855 65.7
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1095.1 848 66.9
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1093.6 851 66.6
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1093.6 855 65.4
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1090.1 849 66.4
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1088.6 851 66.3
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1075.5 851 65.7
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 6.7e-312 1074.3 1033 58.2
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 5.6e-309 1064.3 847 65.8
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 8.9e-307 1057.0 868 67.3
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.4e-304 1049.7 850 66.6
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 7.1e-304 1047.3 849 64.3
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.1e-300 1035.8 850 63.6
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 8.1e-300 1033.9 849 63.3
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.8e-299 1032.7 818 65.8
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 4.9e-297 1024.6 970 58.9
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 5.4e-296 1021.1 877 61.5
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.6e-295 1019.6 655 81.1
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 2.5e-293 1012.3 727 70.7
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 2.1e-292 1009.2 774 67.7
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 1.1e-288 996.9 850 61.2
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 4.6e-287 991.5 867 60.2
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 6.7e-286 987.6 865 60.8
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 8.4e-281 970.7 881 58.5
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 2.6e-274 949.1 643 73.7
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 9.0e-267 924.1 600 77.5
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 4.3e-261 905.2 659 71.8
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 4.3e-261 905.2 849 57.5
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 3.8e-249 865.5 845 55.4
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 5.5e-248 861.7 569 78.7
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 6.8e-230 801.6 572 70.5
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 7.0e-203 711.8 484 78.7
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.5e-197 694.1 488 73.0
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 2.4e-187 660.2 499 68.1
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 1.2e-186 657.9 411 79.8
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 5.1e-161 572.8 867 41.1
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 5.6e-160 569.3 633 52.1
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 3.8e-156 556.6 355 80.0
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.3e-151 541.6 483 60.7
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 4.1e-150 536.6 841 42.7
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 5.7e-144 516.2 859 39.0
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 1.5e-136 491.5 369 68.3
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.4e-134 484.2 396 67.7
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 7.0e-134 482.6 846 36.5
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 6.7e-129 466.1 890 36.6
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.1e-123 448.7 541 49.0
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.7e-119 434.9 349 63.9
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 4.1e-110 403.7 688 39.7
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 8.6e-100 369.4 226 84.5
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 1.3e-87 328.9 207 82.1
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 4.9e-87 327.0 500 40.0
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 4.1e-78 297.4 455 44.8
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.8e-73 282.0 196 77.0
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 3.2e-70 271.2 151 88.7
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 9.3e-70 269.6 209 66.0
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 2.3e-68 265.0 259 55.2
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 2.2e-63 248.4 203 68.5
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.5e-43 182.6 144 66.7
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 4.1e-41 174.5 158 53.8
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 1.5e-35 156.0 117 62.4
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.5e-35 156.0 243 39.5
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 1.6e-34 152.5 132 58.3
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 2.0e-32 145.6 195 44.6
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 7.7e-32 143.7 194 42.3
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 5.5e-30 137.5 153 57.5
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 5.1e-28 131.0 120 57.5
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.0e-27 129.0 75 74.7
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 7.7e-24 117.1 80 72.5
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 4.2e-22 111.3 100 67.0
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 1.4e-20 106.3 65 80.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 2.3e-20 105.5 105 56.2
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 6.7e-20 104.0 84 69.0
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 2.0e-19 102.4 107 51.4
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 3.7e-18 98.2 65 70.8
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 7.0e-17 94.0 58 74.1
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.6e-13 82.8 66 71.2
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 4.7e-13 81.3 584 22.4
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 4.7e-13 81.3 69 58.0
Cre01.g034650 Chlamydomonas reinhardtii HOM05D004564 ORTHO05D006106 1.0e-12 80.1 1000 19.8
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 1.1e-11 76.6 131 39.7
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 2.0e-11 75.9 67 53.7
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 3.3e-11 75.1 131 39.7
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 4.1e-09 68.2 241 28.6
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 1.2e-08 66.6 113 39.8
SEGI_33722 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 3.5e-08 65.1 105 43.8
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 3.5e-08 65.1 85 41.2
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 5.0e-07 61.2 29 96.6


User provided reference genes

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