Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03641 Davidia involucrata HOM05D001216 ORTHO05D003822 4.4e-55 217.6 104 100.0
Prupe.3G039700 Prunus persica HOM05D001216 ORTHO05D003822 9.9e-39 163.3 98 78.6
QL05p004201 Quercus lobata HOM05D001216 ORTHO05D003822 9.9e-39 163.3 97 77.3
Dinv37864 Davidia involucrata HOM05D001216 ORTHO05D003822 1.3e-38 162.9 86 88.4
GSVIVG01016749001 Vitis vinifera HOM05D001216 ORTHO05D003822 5.4e-37 157.5 95 77.9
MD09G1181600 Malus domestica HOM05D001216 ORTHO05D003822 1.2e-36 156.4 95 75.8
Manes.11G019500 Manihot esculenta HOM05D001216 ORTHO05D003822 1.2e-36 156.4 99 73.7
Thecc.06G121200 Theobroma cacao HOM05D001216 ORTHO05D003822 2.1e-36 155.6 98 76.5
Atru.chr1.3998 Acer truncatum HOM05D001216 ORTHO05D003822 2.7e-36 155.2 95 73.7
Cfa003528 Carpinus fangiana HOM05D001216 ORTHO05D003822 2.7e-36 155.2 98 76.5
Ciclev10024989m.g Citrus clementina HOM05D001216 ORTHO05D003822 3.5e-36 154.8 98 75.5
CSS0035701 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D003822 7.9e-36 153.7 98 73.5
Duzib160G0167 Durio zibethinus HOM05D001216 ORTHO05D003822 7.9e-36 153.7 98 76.5
COL.COLO4_30748 Corchorus olitorius HOM05D001216 ORTHO05D003822 1.8e-35 152.5 98 73.5
Haze_16037 Corylus avellana HOM05D001216 ORTHO05D003822 1.8e-35 152.5 100 74.0
Gohir.D10G055500 Gossypium hirsutum HOM05D001216 ORTHO05D003822 1.8e-35 152.5 96 74.0
Gorai.011G059200 Gossypium raimondii HOM05D001216 ORTHO05D003822 1.8e-35 152.5 96 74.0
Gohir.A10G053700 Gossypium hirsutum HOM05D001216 ORTHO05D003822 2.3e-35 152.1 98 74.5
Peaxi162Scf00038g02114 Petunia axillaris HOM05D001216 ORTHO05D003822 2.3e-35 152.1 90 80.0
Nitab4.5_0004422g0050 Nicotiana tabacum HOM05D001216 ORTHO05D003822 3.0e-35 151.8 98 75.5
Oeu026246.1 Olea europaea HOM05D001216 ORTHO05D003822 3.0e-35 151.8 89 80.9
Oeu026247.1 Olea europaea HOM05D001216 ORTHO05D003822 3.0e-35 151.8 89 80.9
MD17G1168000 Malus domestica HOM05D001216 ORTHO05D003822 3.9e-35 151.4 98 73.5
Duzib235G0768 Durio zibethinus HOM05D001216 ORTHO05D003822 5.1e-35 151.0 98 72.4
arahy.Tifrunner.gnm1.ann1.SCHH8V Arachis hypogaea HOM05D001216 ORTHO05D003822 6.7e-35 150.6 98 75.5
Nitab4.5_0007255g0010 Nicotiana tabacum HOM05D001216 ORTHO05D003822 6.7e-35 150.6 98 75.5
Lalb_Chr25g0281501 Lupinus albus HOM05D001216 ORTHO05D003822 1.5e-34 149.4 98 75.5
Oeu000414.1 Olea europaea HOM05D001216 ORTHO05D003822 1.5e-34 149.4 92 75.0
PGSC0003DMG400014030 Solanum tuberosum HOM05D001216 ORTHO05D003822 4.3e-34 147.9 99 74.7
Lalb_Chr04g0263551 Lupinus albus HOM05D001216 ORTHO05D003822 5.6e-34 147.5 98 71.4
CiPaw.01G218200 Carya illinoinensis HOM05D001216 ORTHO05D003822 7.4e-34 147.1 98 73.5
Solyc03g123370.3 Solanum lycopersicum HOM05D001216 ORTHO05D003822 7.4e-34 147.1 99 73.7
Sopen03g041150 Solanum pennellii HOM05D001216 ORTHO05D003822 9.6e-34 146.7 99 73.7
Glyma.16G008400 Glycine max HOM05D001216 ORTHO05D003822 1.3e-33 146.4 98 73.5
MSTRG.10950 Avicennia marina HOM05D001216 ORTHO05D003822 1.6e-33 146.0 100 73.0
Sc15g0000390 Simmondsia chinensis HOM05D001216 ORTHO05D003822 1.6e-33 146.0 91 72.5
FvH4_6g34880 Fragaria vesca HOM05D001216 ORTHO05D003822 2.1e-33 145.6 96 70.8
FAN02G1741 Fragaria x ananassa HOM05D001216 ORTHO05D003822 2.1e-33 145.6 96 70.8
FAN05G2062 Fragaria x ananassa HOM05D001216 ORTHO05D003822 2.1e-33 145.6 96 70.8
FAN09G3390 Fragaria x ananassa HOM05D001216 ORTHO05D003822 2.1e-33 145.6 96 70.8
FAN14G5102 Fragaria x ananassa HOM05D001216 ORTHO05D003822 2.1e-33 145.6 96 70.8
CAN.G668.43 Capsicum annuum HOM05D001216 ORTHO05D003822 2.8e-33 145.2 98 71.4
CsaV3_3G031310 Cucumis sativus L. HOM05D001216 ORTHO05D003822 2.8e-33 145.2 98 68.4
CsaV3_UNG227950 Cucumis sativus L. HOM05D001216 ORTHO05D003822 2.8e-33 145.2 98 68.4
MELO3C025801.2 Cucumis melo HOM05D001216 ORTHO05D003822 3.7e-33 144.8 98 68.4
Glyma.07G039600 Glycine max HOM05D001216 ORTHO05D003822 3.7e-33 144.8 98 72.4
RcHm_v2.0_Chr2g0145751 Rosa chinensis HOM05D001216 ORTHO05D003822 3.7e-33 144.8 96 70.8
Phvul.010G129100 Phaseolus vulgaris HOM05D001216 ORTHO05D003822 4.8e-33 144.4 98 72.4
DCAR_026414 Daucus carota HOM05D001216 ORTHO05D003822 6.2e-33 144.1 98 70.4
Sabra03G0038600 Salix brachista HOM05D001216 ORTHO05D003822 6.2e-33 144.1 99 71.7
CSS0007713 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D003822 1.1e-32 143.3 98 69.4
Ca_23389_v3 Cicer arietinum L. HOM05D001216 ORTHO05D003822 1.1e-32 143.3 96 77.1
ClCG07G014120 Citrullus lanatus HOM05D001216 ORTHO05D003822 1.4e-32 142.9 98 68.4
MBI13_g12061_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D003822 1.4e-32 142.9 91 75.8
Actinidia32192 Actinidia chinensis HOM05D001216 ORTHO05D003822 1.8e-32 142.5 99 69.7
Gohir.A05G140000 Gossypium hirsutum HOM05D001216 ORTHO05D003822 1.8e-32 142.5 98 68.4
Sabra01G0142400 Salix brachista HOM05D001216 ORTHO05D003822 1.8e-32 142.5 99 71.7
TAR383G0104 Trochodendron aralioides HOM05D001216 ORTHO05D003822 1.8e-32 142.5 84 76.2
Actinidia21793 Actinidia chinensis HOM05D001216 ORTHO05D003822 2.4e-32 142.1 99 69.7
Gohir.D05G142300 Gossypium hirsutum HOM05D001216 ORTHO05D003822 2.4e-32 142.1 98 69.4
Gorai.009G146300 Gossypium raimondii HOM05D001216 ORTHO05D003822 2.4e-32 142.1 98 69.4
Potri.003G066000 Populus trichocarpa HOM05D001216 ORTHO05D003822 2.4e-32 142.1 99 71.7
Actinidia26025 Actinidia chinensis HOM05D001216 ORTHO05D003822 4.0e-32 141.4 98 70.4
Cc04_g01270 Coffea canephora HOM05D001216 ORTHO05D003822 5.3e-32 141.0 98 71.4
DCAR_022692 Daucus carota HOM05D001216 ORTHO05D003822 5.3e-32 141.0 96 65.6
SalBow6G2735 Salvia bowleyana HOM05D001216 ORTHO05D003822 5.3e-32 141.0 98 72.4
SalBow6G3972 Salvia bowleyana HOM05D001216 ORTHO05D003822 5.3e-32 141.0 98 72.4
Psat4g177640 Pisum sativum HOM05D001216 ORTHO05D003822 6.9e-32 140.6 95 73.7
CiPaw.02G135500 Carya illinoinensis HOM05D001216 ORTHO05D003822 9.0e-32 140.2 104 69.2
Medtr8g020880 Medicago truncatula HOM05D001216 ORTHO05D003822 9.0e-32 140.2 96 71.9
Eucgr.G00457 Eucalyptus grandis HOM05D001216 ORTHO05D003822 1.2e-31 139.8 89 70.8
Aqoxy7G04059 Aquilegia oxysepala HOM05D001216 ORTHO05D003822 2.0e-31 139.0 98 69.4
CANSAT56G1565 Cannabis sativa HOM05D001216 ORTHO05D003822 2.0e-31 139.0 101 67.3
Carub.0001s4337 Capsella rubella HOM05D001216 ORTHO05D003822 2.0e-31 139.0 99 71.7
Sed0005494 Sechium edule HOM05D001216 ORTHO05D003822 2.0e-31 139.0 98 66.3
BcaB07g33262 Brassica carinata HOM05D001216 ORTHO05D003822 2.6e-31 138.7 99 71.7
PGR102G0760 Punica granatum HOM05D001216 ORTHO05D003822 2.6e-31 138.7 95 65.3
Hund05735 Selenicereus undatus HOM05D001216 ORTHO05D003822 2.6e-31 138.7 97 67.0
VMungo0331G0428 Vigna mungo HOM05D001216 ORTHO05D003822 2.6e-31 138.7 99 70.7
Eucgr.F04408 Eucalyptus grandis HOM05D001216 ORTHO05D003822 4.5e-31 137.9 98 66.3
TWI31G1175 Tripterygium wilfordii HOM05D001216 ORTHO05D003822 4.5e-31 137.9 98 69.4
BcaB02g10860 Brassica carinata HOM05D001216 ORTHO05D003822 5.8e-31 137.5 99 70.7
ClCG09G001000 Citrullus lanatus HOM05D001216 ORTHO05D003822 5.8e-31 137.5 100 65.0
Potri.001G168200 Populus trichocarpa HOM05D001216 ORTHO05D003822 5.8e-31 137.5 95 71.6
TPR.G39846 Trifolium pratense HOM05D001216 ORTHO05D003822 5.8e-31 137.5 96 69.8
MELO3C024351.2 Cucumis melo HOM05D001216 ORTHO05D003822 7.6e-31 137.1 100 63.0
AT1G54130 Arabidopsis thaliana HOM05D001216 ORTHO05D003822 1.0e-30 136.7 99 70.7
A06p00530 Brassica napus HOM05D001216 ORTHO05D003822 1.0e-30 136.7 99 70.7
BraA06t23267Z Brassica rapa HOM05D001216 ORTHO05D003822 1.0e-30 136.7 99 70.7
Lj3g0021321 Lotus japonicus HOM05D001216 ORTHO05D003822 1.0e-30 136.7 95 72.6
Sp1g40580 Schrenkiella parvula HOM05D001216 ORTHO05D003822 1.0e-30 136.7 99 70.7
AUR62009888 Chenopodium quinoa HOM05D001216 ORTHO05D003822 1.3e-30 136.3 100 67.0
CsaV3_7G034440 Cucumis sativus L. HOM05D001216 ORTHO05D003822 1.3e-30 136.3 100 63.0
AUR62001477 Chenopodium quinoa HOM05D001216 ORTHO05D003822 1.7e-30 136.0 100 66.0
Lsat_1_v5_gn_4_93201 Lactuca sativa HOM05D001216 ORTHO05D003822 1.7e-30 136.0 100 66.0
Lj9A532T69 Lonicera japonica HOM05D001216 ORTHO05D003822 1.7e-30 136.0 95 72.6
CARHR044480 Cardamine hirsuta HOM05D001216 ORTHO05D003822 2.2e-30 135.6 99 69.7
AL1G62850 Arabidopsis lyrata HOM05D001216 ORTHO05D003822 2.9e-30 135.2 99 69.7
CANSAT13G0001 Cannabis sativa HOM05D001216 ORTHO05D003822 2.9e-30 135.2 101 66.3
MSTRG.22546 Avicennia marina HOM05D001216 ORTHO05D003822 3.8e-30 134.8 105 69.5
Manes.04G145500 Manihot esculenta HOM05D001216 ORTHO05D003822 4.9e-30 134.4 113 60.2
HanXRQChr04g0094711 Helianthus annuus HOM05D001216 ORTHO05D003822 6.5e-30 134.0 96 64.6
Lj9A524T49 Lonicera japonica HOM05D001216 ORTHO05D003822 6.5e-30 134.0 95 71.6
EL10Ac7g16415 Beta vulgaris HOM05D001216 ORTHO05D003822 8.4e-30 133.7 100 66.0
BolC6t36753H Brassica oleracea HOM05D001216 ORTHO05D003822 1.1e-29 133.3 100 68.0
C06p15660 Brassica napus HOM05D001216 ORTHO05D003822 1.4e-29 132.9 100 68.0
Cpa.g.sc589.2 Carica papaya HOM05D001216 ORTHO05D003822 1.4e-29 132.9 95 67.4
PSO135G0460 Papaver somniferum HOM05D001216 ORTHO05D003822 1.4e-29 132.9 106 66.0
vmacro15040 Vaccinium macrocarpon HOM05D001216 ORTHO05D003822 1.4e-29 132.9 100 65.0
BcaC08g44164 Brassica carinata HOM05D001216 ORTHO05D003822 2.5e-29 132.1 100 68.0
DCAR_016123 Daucus carota HOM05D001216 ORTHO05D003822 4.2e-29 131.3 98 62.2
BcaC08g43593 Brassica carinata HOM05D001216 ORTHO05D003822 5.5e-29 131.0 99 69.7
C06p09910 Brassica napus HOM05D001216 ORTHO05D003822 5.5e-29 131.0 99 69.7
BolC6t36063H Brassica oleracea HOM05D001216 ORTHO05D003822 5.5e-29 131.0 99 69.7
Aa31LG10G1280 Aethionema arabicum HOM05D001216 ORTHO05D003822 7.1e-29 130.6 99 66.7
Aa31LG8G1240 Aethionema arabicum HOM05D001216 ORTHO05D003822 1.2e-28 129.8 99 67.7
Ah.08g216840 Amaranthus hybridus HOM05D001216 ORTHO05D003822 1.2e-28 129.8 100 63.0
PSO724G0441 Papaver somniferum HOM05D001216 ORTHO05D003822 4.6e-28 127.9 100 66.0
Lj5A36T82 Lonicera japonica HOM05D001216 ORTHO05D003822 7.9e-28 127.1 95 69.5
CARHR088880 Cardamine hirsuta HOM05D001216 ORTHO05D003822 1.3e-27 126.3 98 67.3
Sed0012851 Sechium edule HOM05D001216 ORTHO05D003822 1.8e-27 125.9 89 62.9
AL3G26250 Arabidopsis lyrata HOM05D001216 ORTHO05D003822 2.3e-27 125.6 98 66.3
AT3G14050 Arabidopsis thaliana HOM05D001216 ORTHO05D003822 5.1e-27 124.4 98 66.3
THA.LOC104815622 Tarenaya hassleriana HOM05D001216 ORTHO05D003822 5.1e-27 124.4 98 66.3
Nn8g38635 Nelumbo nucifera HOM05D001216 ORTHO05D003822 8.7e-27 123.6 84 70.2
BcaB06g25408 Brassica carinata HOM05D001216 ORTHO05D003822 1.1e-26 123.2 98 65.3
A05p35390 Brassica napus HOM05D001216 ORTHO05D003822 1.5e-26 122.9 98 65.3
BraA05t22349Z Brassica rapa HOM05D001216 ORTHO05D003822 1.5e-26 122.9 98 65.3
Carub.0003s1364 Capsella rubella HOM05D001216 ORTHO05D003822 1.5e-26 122.9 98 65.3
Sp3g12290 Schrenkiella parvula HOM05D001216 ORTHO05D003822 1.9e-26 122.5 98 65.3
THA.LOC104810369 Tarenaya hassleriana HOM05D001216 ORTHO05D003822 3.3e-26 121.7 99 66.7
BcaC05g29127 Brassica carinata HOM05D001216 ORTHO05D003822 9.6e-26 120.2 98 64.3
C05p53580 Brassica napus HOM05D001216 ORTHO05D003822 9.6e-26 120.2 98 64.3
BolC5t34035H Brassica oleracea HOM05D001216 ORTHO05D003822 9.6e-26 120.2 98 64.3
vmacro22037 Vaccinium macrocarpon HOM05D001216 ORTHO05D003822 1.6e-25 119.4 84 64.3
MSTRG.9522 Avicennia marina HOM05D001216 ORTHO05D003822 2.1e-25 119.0 87 69.0
Rhsim08G0239700 Rhododendron simsii HOM05D001216 ORTHO05D003822 2.1e-25 119.0 93 62.4
Hma1.2p1_0686F.1_g203400 Hydrangea macrophylla HOM05D001216 ORTHO05D003822 2.8e-25 118.6 94 67.0
Zm00001eb040400 Zea mays HOM05D001216 ORTHO05D003822 8.2e-25 117.1 76 68.4
SGA_v2.0_scaffold122G33340 Striga asiatica HOM05D001216 ORTHO05D003822 1.1e-24 116.7 79 65.8
Migut.D00935 Erythranthe guttata HOM05D001216 ORTHO05D003822 3.1e-24 115.2 84 63.1
Thhalv10020161m.g Eutrema salsugineum HOM05D001216 ORTHO05D003822 4.1e-24 114.8 98 63.3
Os08g0457600 Oryza sativa ssp. japonica HOM05D001216 ORTHO05D003822 4.1e-24 114.8 89 61.8
HPP92_016606 Vanilla planifolia HOM05D001216 ORTHO05D003822 5.3e-24 114.4 83 65.1
SalBow7G2863 Salvia bowleyana HOM05D001216 ORTHO05D003822 6.9e-24 114.0 76 72.4
Hma1.2p1_0074F.1_g038810 Hydrangea macrophylla HOM05D001216 ORTHO05D003822 9.0e-24 113.6 91 62.6
Hma1.2p1_3000F.1_g331522 Hydrangea macrophylla HOM05D001216 ORTHO05D003822 9.0e-24 113.6 91 62.6
SGA_v2.0_scaffold71G23848 Striga asiatica HOM05D001216 ORTHO05D003822 9.0e-24 113.6 79 63.3
ECA247G4000 Erigeron canadensis HOM05D001216 ORTHO05D003822 2.6e-23 112.1 75 70.7
Os09g0442600 Oryza sativa ssp. japonica HOM05D001216 ORTHO05D003822 1.3e-22 109.8 79 60.8
HPP92_009226 Vanilla planifolia HOM05D001216 ORTHO05D003822 1.3e-22 109.8 83 60.2
Hund18688 Selenicereus undatus HOM05D001216 ORTHO05D003822 2.2e-22 109.0 84 64.3
PGR119G1618 Punica granatum HOM05D001216 ORTHO05D003822 1.1e-21 106.7 85 60.0
Rhsim12G0210000 Rhododendron simsii HOM05D001216 ORTHO05D003822 1.4e-21 106.3 85 60.0
Zm00001eb314240 Zea mays HOM05D001216 ORTHO05D003822 1.4e-21 106.3 79 59.5
ATR0598G350 Amborella trichopoda HOM05D001216 ORTHO05D003822 1.2e-20 103.2 81 63.0
Migut.I01081 Erythranthe guttata HOM05D001216 ORTHO05D003822 6.1e-20 100.9 100 60.0
unitig_32.g11562 Utricularia gibba HOM05D001216 ORTHO05D003822 1.0e-19 100.1 86 60.5
CDE06G0396 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 3.0e-19 98.6 83 56.6
CDE04G2782 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 6.7e-19 97.4 97 52.6
Lsat_1_v5_gn_1_38241 Lactuca sativa HOM05D001216 ORTHO05D003822 1.6e-17 92.8 57 75.4
Sed0005723 Sechium edule HOM05D001216 ORTHO05D003822 5.9e-15 84.3 87 50.6
HanXRQChr09g0276921 Helianthus annuus HOM05D001216 ORTHO05D003822 1.7e-14 82.8 73 57.5
HanXRQChr13g0405281 Helianthus annuus HOM05D001216 ORTHO05D003822 2.9e-14 82.0 73 56.2
CDE05G3664 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 5.0e-14 81.3 79 55.7
Oeu043648.1 Olea europaea HOM05D001216 ORTHO05D003822 6.5e-14 80.9 56 67.9
SEGI_30947 Sequoiadendron giganteum HOM05D001216 ORTHO05D003822 1.7e-09 66.2 53 58.5
Thhalv10011285m.g Eutrema salsugineum HOM05D001216 ORTHO05D003822 3.4e-07 58.5 49 55.1


User provided reference genes

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