Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03572 Davidia involucrata HOM05D007435 ORTHO05D009338 5.7e-56 220.7 114 100.0
Dinv05039 Davidia involucrata HOM05D007435 ORTHO05D009338 5.7e-56 220.7 114 100.0
Dinv32059 Davidia involucrata HOM05D007435 ORTHO05D009338 1.5e-35 152.9 93 82.8
Actinidia21528 Actinidia chinensis HOM05D007435 ORTHO05D009338 1.3e-31 139.8 99 67.7
Actinidia02252 Actinidia chinensis HOM05D007435 ORTHO05D009338 3.8e-31 138.3 104 65.4
Rhsim05G0126700 Rhododendron simsii HOM05D007435 ORTHO05D009338 5.4e-30 134.4 93 69.9
CSS0019859 Camellia sinensis var. sinensis HOM05D007435 ORTHO05D009338 1.0e-28 130.2 96 66.7
MD07G1027000 Malus domestica HOM05D007435 ORTHO05D009338 4.3e-27 124.8 94 67.0
TAR369G0027 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.1e-26 122.5 88 68.2
Prupe.2G027100 Prunus persica HOM05D007435 ORTHO05D009338 2.8e-26 122.1 94 63.8
TAR065G0004 Trochodendron aralioides HOM05D007435 ORTHO05D009338 2.8e-26 122.1 88 68.2
PGSC0003DMG401006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 4.7e-26 121.3 101 63.4
Nitab4.5_0000316g0230 Nicotiana tabacum HOM05D002000 ORTHO05D002027 1.1e-25 120.2 113 58.4
Thecc.10G004500 Theobroma cacao HOM05D007435 ORTHO05D009338 1.8e-25 119.4 97 63.9
Nitab4.5_0001775g0080 Nicotiana tabacum HOM05D007435 ORTHO05D009338 2.4e-25 119.0 113 58.4
Solyc01g068190.3 Solanum lycopersicum HOM05D007435 ORTHO05D009338 1.2e-24 116.7 95 62.1
Sopen01g030130 Solanum pennellii HOM05D007435 ORTHO05D009338 1.2e-24 116.7 95 62.1
Hma1.2p1_0269F.1_g107800 Hydrangea macrophylla HOM05D007435 ORTHO05D009338 1.5e-24 116.3 157 45.9
Cpa.g.sc197.17 Carica papaya HOM05D007435 ORTHO05D009338 3.4e-24 115.2 94 67.0
MD02G1297000 Malus domestica HOM05D007435 ORTHO05D009338 3.4e-24 115.2 94 63.8
AUR62026808 Chenopodium quinoa HOM05D007435 ORTHO05D009338 7.6e-24 114.0 98 61.2
COL.COLO4_19345 Corchorus olitorius HOM05D007435 ORTHO05D009338 1.3e-23 113.2 116 58.6
AUR62037244 Chenopodium quinoa HOM05D007435 ORTHO05D009338 1.7e-23 112.8 93 63.4
Lsat_1_v5_gn_1_100400 Lactuca sativa HOM05D007435 ORTHO05D009338 2.2e-23 112.5 110 56.4
SGA_v2.0_scaffold354G49740 Striga asiatica HOM05D007435 ORTHO05D009338 2.2e-23 112.5 100 61.0
FvH4_7g02100 Fragaria vesca HOM05D007435 ORTHO05D009338 3.8e-23 111.7 89 61.8
FAN03G1772 Fragaria x ananassa HOM05D007435 ORTHO05D009338 6.4e-23 110.9 91 60.4
Peaxi162Scf00087g00129 Petunia axillaris HOM05D007435 ORTHO05D009338 6.4e-23 110.9 110 55.5
Ah.10g030920 Amaranthus hybridus HOM05D007435 ORTHO05D009338 8.4e-23 110.5 99 61.6
Eucgr.G03266 Eucalyptus grandis HOM05D007435 ORTHO05D009338 1.9e-22 109.4 91 62.6
RcHm_v2.0_Chr1g0319401 Rosa chinensis HOM05D007435 ORTHO05D009338 1.9e-22 109.4 91 61.5
DCAR_009211 Daucus carota HOM05D007435 ORTHO05D009338 3.2e-22 108.6 94 60.6
Nn7g36439 Nelumbo nucifera HOM05D007435 ORTHO05D009338 3.2e-22 108.6 88 60.2
Duzib128G0703 Durio zibethinus HOM05D007435 ORTHO05D009338 4.2e-22 108.2 102 57.8
Haze_03106 Corylus avellana HOM05D007435 ORTHO05D009338 7.1e-22 107.5 99 55.6
Lj3g0014273 Lotus japonicus HOM05D007435 ORTHO05D009338 9.3e-22 107.1 101 56.4
Cfa010840 Carpinus fangiana HOM05D007435 ORTHO05D009338 2.1e-21 105.9 100 56.0
Sc10g0004150 Simmondsia chinensis HOM05D007435 ORTHO05D009338 2.1e-21 105.9 94 58.5
Migut.N01821 Erythranthe guttata HOM05D007435 ORTHO05D009338 2.7e-21 105.5 94 59.6
Manes.11G002100 Manihot esculenta HOM05D007435 ORTHO05D009338 2.7e-21 105.5 96 61.5
SalBow6G1324 Salvia bowleyana HOM05D007435 ORTHO05D009338 2.7e-21 105.5 103 58.3
Duzib114G0226 Durio zibethinus HOM05D007435 ORTHO05D009338 3.5e-21 105.1 106 57.5
TWI63G0886 Tripterygium wilfordii HOM05D007435 ORTHO05D009338 7.8e-21 104.0 102 58.8
Aa31LG2G18760 Aethionema arabicum HOM05D007435 ORTHO05D009338 1.7e-20 102.8 93 60.2
CiPaw.13G009600 Carya illinoinensis HOM05D007435 ORTHO05D009338 1.7e-20 102.8 109 52.3
ECA248G3437 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.0e-20 102.1 93 60.2
HanXRQChr01g0020861 Helianthus annuus HOM05D007435 ORTHO05D009338 1.1e-19 100.1 91 54.9
ClCG01G007560 Citrullus lanatus HOM05D007435 ORTHO05D009338 1.5e-19 99.8 85 57.6
Sed0015818 Sechium edule HOM05D007435 ORTHO05D009338 1.9e-19 99.4 85 58.8
CsaV3_5G024570 Cucumis sativus L. HOM05D007435 ORTHO05D009338 3.3e-19 98.6 98 55.1
AL343U10010 Arabidopsis lyrata HOM05D007435 ORTHO05D009338 4.3e-19 98.2 93 57.0
AT4G31560 Arabidopsis thaliana HOM05D007435 ORTHO05D009338 4.3e-19 98.2 93 57.0
unitig_578.g16053 Utricularia gibba HOM05D007435 ORTHO05D009338 4.3e-19 98.2 97 58.8
MELO3C005141.2 Cucumis melo HOM05D007435 ORTHO05D009338 5.6e-19 97.8 98 54.1
MBI13_g04786_MAGBIO Magnolia biondii HOM05D007435 ORTHO05D009338 7.3e-19 97.4 96 60.4
Carub.0007s0901 Capsella rubella HOM05D007435 ORTHO05D009338 2.1e-18 95.9 96 54.2
ATR0006G035 Amborella trichopoda HOM05D007435 ORTHO05D009338 2.8e-18 95.5 101 54.5
Psat5g213320 Pisum sativum HOM05D007435 ORTHO05D009338 2.8e-18 95.5 95 54.7
PSO339G5565 Papaver somniferum HOM05D007435 ORTHO05D009338 4.8e-18 94.7 87 56.3
C07p58750 Brassica napus HOM05D007435 ORTHO05D009338 1.4e-17 93.2 93 55.9
BolC7t46323H Brassica oleracea HOM05D007435 ORTHO05D009338 1.4e-17 93.2 93 55.9
CANSAT80G0490 Cannabis sativa HOM05D007435 ORTHO05D009338 1.4e-17 93.2 92 56.5
CARHR239440 Cardamine hirsuta HOM05D007435 ORTHO05D009338 2.4e-17 92.4 92 54.3
Medtr3g023160 Medicago truncatula HOM05D007435 ORTHO05D009338 4.0e-17 91.7 96 52.1
BcaNung01514 Brassica carinata HOM05D007435 ORTHO05D009338 5.3e-17 91.3 93 53.8
Gohir.D10G251200 Gossypium hirsutum HOM05D007435 ORTHO05D009338 6.9e-17 90.9 91 56.0
Gorai.011G291600 Gossypium raimondii HOM05D007435 ORTHO05D009338 6.9e-17 90.9 91 56.0
Gohir.A10G239300 Gossypium hirsutum HOM05D007435 ORTHO05D009338 9.0e-17 90.5 92 55.4
PGR031G0502 Punica granatum HOM05D007435 ORTHO05D009338 1.5e-16 89.7 89 57.3
Sp7g29390 Schrenkiella parvula HOM05D007435 ORTHO05D009338 1.5e-16 89.7 93 53.8
Thhalv10026511m.g Eutrema salsugineum HOM05D007435 ORTHO05D009338 2.0e-16 89.4 93 51.6
BcaNung04129 Brassica carinata HOM05D007435 ORTHO05D009338 2.6e-16 89.0 93 52.7
A03p60860 Brassica napus HOM05D007435 ORTHO05D009338 2.6e-16 89.0 93 52.7
BraA03t15122Z Brassica rapa HOM05D007435 ORTHO05D009338 2.6e-16 89.0 93 52.7
Lalb_Chr25g0282731 Lupinus albus HOM05D007435 ORTHO05D009338 2.6e-16 89.0 98 51.0
C01p07440 Brassica napus HOM05D007435 ORTHO05D009338 3.4e-16 88.6 107 49.5
BolC1t00726H Brassica oleracea HOM05D007435 ORTHO05D009338 3.4e-16 88.6 107 49.5
QL04p013057 Quercus lobata HOM05D007435 ORTHO05D009338 3.4e-16 88.6 125 44.8
A01p06670 Brassica napus HOM05D005366 ORTHO05D006323 4.5e-16 88.2 92 53.3
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 4.5e-16 88.2 92 53.3
QL04p012434 Quercus lobata HOM05D007435 ORTHO05D009338 5.8e-16 87.8 125 43.2
CDE08G0963 Ceratophyllum demersum HOM05D000584 ORTHO05D009338 7.6e-16 87.4 92 52.2
arahy.Tifrunner.gnm1.ann1.4Y0UDN Arachis hypogaea HOM05D007435 ORTHO05D009338 2.2e-15 85.9 107 48.6
Ciclev10032994m.g Citrus clementina HOM05D007435 ORTHO05D009338 2.2e-15 85.9 98 50.0
Potri.001G022500 Populus trichocarpa HOM05D007435 ORTHO05D009338 2.9e-15 85.5 107 51.4
THA.LOC104826709 Tarenaya hassleriana HOM05D007435 ORTHO05D009338 2.9e-15 85.5 94 51.1
BcaC09g51937 Brassica carinata HOM05D007435 ORTHO05D009338 3.8e-15 85.1 105 48.6
CDE06G1029 Ceratophyllum demersum HOM05D007435 ORTHO05D009338 1.1e-14 83.6 87 49.4
Glyma.11G149600 Glycine max HOM05D007435 ORTHO05D009338 9.3e-14 80.5 102 43.1
Hund13323 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.6e-13 79.7 52 73.1
arahy.Tifrunner.gnm1.ann1.KRJM02 Arachis hypogaea HOM05D007435 ORTHO05D009338 4.6e-13 78.2 99 46.5
vmacro19756 Vaccinium macrocarpon HOM05D007435 ORTHO05D009338 3.9e-12 75.1 63 63.5
Phvul.005G033400 Phaseolus vulgaris HOM05D007435 ORTHO05D009338 3.3e-11 72.0 99 44.4
Zm00001eb363190 Zea mays HOM05D007435 ORTHO05D009338 9.6e-11 70.5 115 40.0
Atru.chr11.2511 Acer truncatum HOM05D007435 ORTHO05D009338 6.2e-10 67.8 103 40.8
Haze_19805 Corylus avellana HOM05D007435 ORTHO05D009338 2.4e-09 65.9 50 64.0
Sabra01G0016900 Salix brachista HOM05D007435 ORTHO05D009338 2.4e-09 65.9 52 59.6
Ca_27018_v3 Cicer arietinum L. HOM05D007435 ORTHO05D009338 3.1e-09 65.5 64 54.7
VMungo1080G0635 Vigna mungo HOM05D007435 ORTHO05D009338 5.3e-09 64.7 102 40.2
Aqoxy1G00332 Aquilegia oxysepala HOM05D007435 ORTHO05D009338 1.2e-08 63.5 75 44.0
HPP92_025000 Vanilla planifolia HOM05D007435 ORTHO05D009338 4.5e-08 61.6 107 41.1
Oeu003913.1 Olea europaea HOM05D007435 ORTHO05D009338 2.2e-07 59.3 65 50.8
Os01g0940600 Oryza sativa ssp. japonica HOM05D007435 ORTHO05D009338 4.9e-07 58.2 92 38.0
PGSC0003DMG402006753 Solanum tuberosum HOM05D007435 ORTHO05D009338 1.4e-06 56.6 44 59.1
Zm00001eb141550 Zea mays HOM05D007435 ORTHO05D009338 1.4e-06 56.6 126 37.3


User provided reference genes

Program Settings