Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 6.0e-226 787.3 402 100.0
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 5.0e-196 688.0 357 98.6
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.8e-159 565.1 406 71.7
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.4e-150 537.0 406 68.7
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 7.0e-150 534.6 401 68.6
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.8e-145 520.0 402 65.9
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 3.1e-145 519.2 403 67.0
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.3e-143 513.8 401 66.8
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 9.2e-142 507.7 401 64.8
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.3e-140 503.8 405 65.2
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 4.3e-139 498.8 403 64.5
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.6e-138 496.9 401 64.1
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 4.1e-134 482.3 403 61.8
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 3.5e-133 479.2 402 61.4
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 3.5e-133 479.2 403 62.0
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 6.0e-133 478.4 403 61.8
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 5.1e-132 475.3 403 62.0
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.9e-131 473.4 401 60.6
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.9e-131 473.4 403 61.8
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 2.8e-130 469.5 402 59.5
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 8.1e-130 468.0 401 60.1
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.4e-129 467.2 402 60.2
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 2.9e-127 459.5 395 59.5
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 3.7e-127 459.1 405 59.5
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 3.9e-124 449.1 414 54.8
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 8.1e-122 441.4 402 57.2
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 2.4e-121 439.9 400 56.2
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 6.8e-121 438.3 476 53.6
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.2e-120 437.6 402 57.2
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 2.6e-120 436.4 317 69.1
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 1.3e-119 434.1 401 55.1
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 3.2e-118 429.5 402 56.0
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 4.2e-118 429.1 435 53.1
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 7.1e-118 428.3 409 55.0
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 4.6e-117 425.6 399 56.6
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 6.0e-117 425.2 405 55.6
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.0e-116 424.5 402 55.7
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.3e-116 424.1 404 53.5
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.1e-115 421.0 418 54.1
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 2.8e-114 416.4 400 55.5
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 3.6e-114 416.0 424 52.8
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 4.8e-114 415.6 407 57.7
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.4e-113 414.1 405 54.1
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 3.1e-113 412.9 403 54.6
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 1.2e-112 411.0 406 53.9
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 4.4e-112 409.1 401 54.9
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 9.9e-112 407.9 411 52.1
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.7e-111 407.1 411 51.6
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 6.4e-111 405.2 407 51.6
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 8.4e-111 404.8 402 53.5
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 3.2e-110 402.9 403 52.9
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 4.2e-110 402.5 398 54.8
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 5.4e-110 402.1 402 53.7
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.2e-109 401.0 416 50.0
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 2.1e-109 400.2 411 51.8
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 4.6e-109 399.1 411 51.8
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.5e-107 394.0 402 53.0
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.6e-107 392.1 401 53.1
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.6e-107 391.3 401 53.1
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 3.6e-106 389.4 404 52.5
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.6e-106 389.4 400 52.8
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 3.6e-106 389.4 400 52.5
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 6.2e-106 388.7 401 53.1
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 1.1e-105 387.9 394 53.6
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.8e-105 387.1 383 53.5
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 9.9e-104 381.3 401 51.9
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.3e-103 380.9 400 48.2
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 4.9e-103 379.0 406 50.0
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 6.4e-103 378.6 403 51.1
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.4e-102 376.7 353 55.0
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 2.4e-102 376.7 429 47.6
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.4e-102 375.6 401 51.9
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.1e-101 373.6 437 49.0
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.0e-100 371.3 420 49.0
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.9e-100 369.4 407 49.6
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 7.4e-99 365.2 400 49.2
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 9.6e-99 364.8 409 47.9
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 5.3e-97 359.0 409 46.9
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.2e-96 357.8 403 48.1
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.0e-96 357.1 605 37.4
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.0e-96 357.1 403 45.9
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.6e-96 356.7 402 45.5
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.8e-95 352.8 401 46.6
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 4.9e-95 352.4 402 49.3
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 6.5e-95 352.1 400 47.5
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 6.5e-95 352.1 400 46.5
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.1e-94 351.3 401 47.4
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.4e-94 350.9 403 46.4
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.5e-94 350.1 400 47.0
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 3.2e-94 349.7 402 46.0
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.2e-94 349.4 403 50.9
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 1.0e-92 344.7 402 44.3
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 1.8e-92 344.0 402 47.8
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 2.3e-92 343.6 403 46.4
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 3.9e-92 342.8 400 47.0
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 5.1e-92 342.4 397 48.4
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.5e-91 340.9 403 45.4
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 3.7e-90 336.3 409 47.9
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 3.7e-90 336.3 401 45.9
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.4e-89 334.3 402 48.5
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 6.9e-89 332.0 407 44.5
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.0e-88 330.5 426 43.7
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.7e-87 327.4 399 44.1
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 3.5e-85 319.7 407 43.0
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 6.7e-84 315.5 401 42.6
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 6.7e-84 315.5 401 42.6
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 6.7e-84 315.5 401 42.6
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.1e-83 314.7 401 42.6
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 1.9e-83 313.9 401 42.6
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 9.7e-83 311.6 408 43.4
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 8.8e-76 288.5 322 49.4
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 5.9e-72 275.8 431 41.3
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 4.2e-70 269.6 413 41.4
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.2e-70 268.9 396 44.4
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.2e-61 241.5 297 48.5
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 2.7e-61 240.4 407 40.5
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 8.2e-58 228.8 411 38.9
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.2e-56 224.9 309 42.7
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 1.3e-55 221.5 245 46.9
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 1.9e-54 217.6 218 49.1
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 9.4e-54 215.3 290 43.1
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 2.3e-52 210.7 373 37.5
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 4.1e-49 199.9 449 33.6
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 2.7e-48 197.2 240 46.7
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 3.5e-48 196.8 441 33.8
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.5e-46 191.4 197 48.2
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 9.4e-46 188.7 407 33.7
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.8e-41 174.5 384 34.9
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 7.0e-41 172.6 230 43.5
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 1.8e-36 157.9 110 67.3
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 2.3e-36 157.5 108 72.2
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.0e-35 154.5 140 57.1
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 7.5e-35 152.5 267 38.6
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 8.3e-34 149.1 321 34.9
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.1e-30 138.7 412 31.6
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 3.3e-30 137.1 413 31.2
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.3e-30 137.1 398 29.9
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 6.2e-29 132.9 309 36.2
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 5.8e-27 126.3 332 31.0
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.7e-26 124.8 153 47.7
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.9e-26 124.0 246 35.4
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 4.9e-26 123.2 139 48.9
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 5.4e-25 119.8 448 25.4
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.0e-24 117.9 149 46.3
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.7e-23 114.8 133 46.6
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.6e-21 107.1 141 40.4
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.3e-20 104.4 158 38.6
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 2.0e-19 101.3 156 39.1
Dinv03510 Davidia involucrata HOM05D004436 ORTHO05D005179 1.9e-14 84.7 43 95.3
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 4.3e-14 83.6 147 38.1
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 2.1e-13 81.3 110 40.0
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 1.4e-12 78.6 84 53.6
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.4e-11 73.9 116 37.9
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 4.1e-09 67.0 122 36.1
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 5.4e-09 66.6 130 34.6
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 5.4e-09 66.6 130 34.6
Cre01.g070567 Chlamydomonas reinhardtii HOM05D004436 ORTHO05D005179 3.0e-07 60.8 448 22.8
ATR0589G117 Amborella trichopoda HOM05D004436 ORTHO05D005179 9.6e-06 55.8 94 39.4


User provided reference genes

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