Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 4.8e-73 277.7 139 100.0
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 4.7e-52 208.0 115 89.6
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 4.4e-42 174.9 121 77.7
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 3.1e-19 99.0 109 56.0
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 4.2e-16 88.6 109 51.4
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.6e-13 78.2 137 42.3
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.6e-13 78.2 137 42.3
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.3e-12 77.0 92 47.8
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 2.1e-12 76.3 92 47.8
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 3.6e-12 75.5 111 45.0
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 6.2e-12 74.7 136 43.4
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.1e-11 73.9 109 43.1
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 1.1e-11 73.9 90 48.9
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 1.4e-11 73.6 111 45.0
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.8e-11 73.2 92 43.5
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 2.4e-11 72.8 109 45.9
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 3.1e-11 72.4 107 44.9
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 3.1e-11 72.4 119 45.4
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 4.0e-11 72.0 109 43.1
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 5.3e-11 71.6 108 48.1
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 6.9e-11 71.2 112 44.6
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 6.9e-11 71.2 110 45.5
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 9.0e-11 70.9 112 42.0
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 9.0e-11 70.9 93 44.1
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 9.0e-11 70.9 96 49.0
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.2e-10 70.5 110 44.5
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 1.2e-10 70.5 92 43.5
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 1.2e-10 70.5 111 45.0
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.2e-10 70.5 92 45.7
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.5e-10 70.1 108 47.2
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.5e-10 70.1 93 46.2
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 1.5e-10 70.1 108 40.7
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 2.0e-10 69.7 110 43.6
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 2.0e-10 69.7 110 43.6
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.0e-10 69.7 108 40.7
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 2.6e-10 69.3 92 43.5
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 2.6e-10 69.3 92 43.5
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 3.4e-10 68.9 109 45.9
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 4.4e-10 68.6 139 37.4
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 4.4e-10 68.6 108 41.7
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.4e-10 68.6 110 43.6
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 4.4e-10 68.6 96 49.0
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 5.8e-10 68.2 108 44.4
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 5.8e-10 68.2 111 41.4
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 5.8e-10 68.2 96 47.9
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 7.6e-10 67.8 110 42.7
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 7.6e-10 67.8 93 46.2
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 9.9e-10 67.4 110 41.8
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 9.9e-10 67.4 82 48.8
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 9.9e-10 67.4 110 41.8
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 9.9e-10 67.4 109 38.5
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.3e-09 67.0 116 37.9
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.3e-09 67.0 112 39.3
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 1.3e-09 67.0 112 43.8
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 1.7e-09 66.6 116 37.9
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 2.2e-09 66.2 108 41.7
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 2.9e-09 65.9 123 38.2
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 2.9e-09 65.9 93 47.3
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 3.8e-09 65.5 92 43.5
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 4.9e-09 65.1 92 43.5
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 6.4e-09 64.7 108 44.4
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 6.4e-09 64.7 93 49.5
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 8.4e-09 64.3 109 39.4
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 8.4e-09 64.3 112 41.1
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 1.1e-08 63.9 109 41.3
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.4e-08 63.5 118 39.8
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 1.9e-08 63.2 92 43.5
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 1.9e-08 63.2 108 40.7
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 2.4e-08 62.8 120 40.0
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 2.4e-08 62.8 111 42.3
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 3.2e-08 62.4 104 39.4
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 3.2e-08 62.4 107 41.1
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 3.2e-08 62.4 92 46.7
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 4.2e-08 62.0 119 38.7
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 4.2e-08 62.0 109 41.3
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 4.2e-08 62.0 115 39.1
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 7.1e-08 61.2 109 45.0
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 1.2e-07 60.5 131 34.4
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 1.2e-07 60.5 109 38.5
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 2.1e-07 59.7 110 40.9
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 4.6e-07 58.5 80 43.8
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 6.0e-07 58.2 80 42.5
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 6.0e-07 58.2 110 38.2
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 6.0e-07 58.2 108 38.0
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 7.9e-07 57.8 93 39.8
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 1.0e-06 57.4 77 44.2
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.0e-06 57.4 109 36.7
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 1.0e-06 57.4 155 32.3
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.3e-06 57.0 77 44.2
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 1.3e-06 57.0 110 40.0
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 1.7e-06 56.6 80 43.8
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 1.7e-06 56.6 83 42.2
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 1.7e-06 56.6 83 42.2
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 1.7e-06 56.6 83 42.2
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 1.7e-06 56.6 83 42.2
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 1.7e-06 56.6 80 42.5
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 1.7e-06 56.6 109 36.7
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.7e-06 56.6 80 48.8
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 2.3e-06 56.2 83 41.0
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 2.3e-06 56.2 83 41.0
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 5.1e-06 55.1 110 35.5
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 6.6e-06 54.7 109 40.4
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 6.6e-06 54.7 110 41.8
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 6.6e-06 54.7 109 39.4
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 8.7e-06 54.3 103 41.7
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 8.7e-06 54.3 93 36.6


User provided reference genes

Program Settings