Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 9.4e-248 859.8 440 100.0
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 5.7e-229 797.3 440 92.5
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 7.0e-219 763.8 440 89.5
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.5e-218 761.5 440 89.3
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 9.8e-213 743.4 439 87.5
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.3e-212 743.0 442 86.9
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 7.0e-211 737.3 443 85.6
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 4.6e-210 734.6 442 84.8
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.7e-209 732.6 440 84.3
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 3.3e-208 728.4 442 84.8
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 9.5e-208 726.9 442 82.8
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.2e-207 726.5 442 84.4
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.2e-207 726.5 440 84.1
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.8e-207 725.3 447 84.6
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 6.2e-207 724.2 444 84.7
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 8.1e-207 723.8 439 85.2
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 1.4e-206 723.0 443 83.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.8e-206 722.6 440 83.0
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.3e-206 722.2 441 83.0
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 4.4e-205 718.0 444 84.0
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 9.9e-205 716.8 440 82.5
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.3e-204 716.5 443 82.4
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 2.9e-204 715.3 441 83.2
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 3.7e-204 714.9 443 83.1
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 4.9e-204 714.5 441 83.2
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.1e-203 713.4 443 81.7
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 1.1e-203 713.4 440 83.0
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.4e-203 713.0 444 82.0
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.4e-203 713.0 444 82.0
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 2.4e-203 712.2 443 82.6
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 5.4e-203 711.1 444 82.9
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 7.1e-203 710.7 444 81.1
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 7.1e-203 710.7 419 85.9
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.6e-202 709.5 440 83.4
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 2.7e-202 708.8 441 83.0
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 3.5e-202 708.4 440 83.4
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 4.6e-202 708.0 438 82.6
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.0e-201 706.8 442 82.8
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.3e-201 706.4 439 82.5
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.7e-201 706.1 437 82.4
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.7e-201 706.1 444 82.0
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.3e-201 705.7 440 83.0
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 3.9e-201 704.9 440 81.6
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 6.6e-201 704.1 441 82.1
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 8.6e-201 703.7 440 81.4
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.1e-200 703.4 439 82.5
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 1.5e-200 703.0 445 82.2
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 4.3e-200 701.4 443 81.7
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.6e-199 698.4 440 81.8
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.6e-199 698.4 442 81.2
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 6.2e-199 697.6 440 81.6
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 6.2e-199 697.6 440 81.6
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 6.2e-199 697.6 441 81.6
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 6.2e-199 697.6 443 81.0
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 8.1e-199 697.2 441 81.6
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.1e-198 696.8 445 81.8
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 3.1e-198 695.3 442 81.9
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.2e-197 693.3 439 81.8
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.5e-197 693.0 443 80.6
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 9.9e-197 690.3 440 81.6
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.2e-196 689.1 440 80.2
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 4.9e-196 688.0 440 80.9
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 6.4e-196 687.6 436 79.6
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 6.4e-196 687.6 441 80.0
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.9e-195 686.0 446 81.6
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.9e-195 686.0 440 80.9
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 4.2e-195 684.9 445 78.9
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.2e-194 683.3 441 80.0
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 2.1e-194 682.6 442 80.3
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 4.6e-194 681.4 438 80.6
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.0e-193 680.2 437 79.2
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 2.3e-193 679.1 440 78.9
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 3.0e-193 678.7 444 79.5
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 5.1e-193 677.9 440 80.2
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.9e-192 676.0 439 79.7
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 5.6e-192 674.5 440 78.9
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 7.3e-192 674.1 438 78.8
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.6e-191 672.9 442 77.8
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.6e-191 672.9 413 82.8
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 2.1e-191 672.5 437 79.9
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 3.6e-191 671.8 440 78.4
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.1e-190 670.2 442 79.9
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.4e-190 669.8 408 82.8
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 3.1e-190 668.7 408 82.6
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 5.3e-190 667.9 436 78.9
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.2e-189 666.8 438 79.9
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.3e-188 663.3 448 77.9
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 2.9e-188 662.1 438 79.2
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 2.9e-188 662.1 438 79.2
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 3.8e-188 661.8 439 79.5
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 3.2e-187 658.7 439 78.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.2e-186 656.8 437 78.9
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 3.5e-186 655.2 439 78.8
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 3.5e-186 655.2 441 78.2
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 3.5e-186 655.2 441 78.2
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 7.8e-186 654.1 441 78.2
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.0e-185 653.7 441 78.2
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.0e-185 653.7 482 73.0
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 3.0e-185 652.1 436 77.8
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 3.0e-185 652.1 438 78.3
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.1e-185 651.4 388 86.1
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 2.5e-184 649.0 444 75.7
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 2.5e-184 649.0 440 78.0
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 5.6e-184 647.9 377 86.2
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.6e-183 646.4 436 78.2
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 2.8e-183 645.6 436 78.2
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.1e-182 643.7 391 84.9
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 5.3e-182 641.3 414 80.0
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 5.3e-182 641.3 414 80.0
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 5.8e-181 637.9 436 76.1
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 5.8e-181 637.9 436 76.1
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 9.9e-181 637.1 433 76.0
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.7e-180 636.3 398 79.9
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 4.2e-179 631.7 438 74.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.2e-178 630.2 426 76.1
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 8.7e-177 624.0 434 74.4
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 4.3e-176 621.7 398 78.6
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 7.4e-176 620.9 444 74.8
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 6.2e-175 617.8 387 79.6
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 3.1e-174 615.5 488 67.0
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 6.2e-167 591.3 436 72.0
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.7e-162 575.9 367 82.0
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 9.0e-158 560.8 394 76.4
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.0e-153 547.4 307 90.9
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.9e-153 545.4 417 66.4
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 9.7e-152 540.8 361 78.7
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 6.3e-151 538.1 397 68.8
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 4.1e-150 535.4 407 66.1
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 7.7e-149 531.2 366 70.5
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 5.1e-145 518.5 370 69.7
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-144 517.3 378 68.8
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.4e-144 515.4 400 66.0
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 5.7e-144 515.0 400 66.0
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.8e-143 512.7 366 68.0
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 8.2e-143 511.1 387 65.4
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.8e-142 510.0 376 67.3
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.8e-142 510.0 425 63.3
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 3.8e-140 502.3 361 71.5
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.3e-136 489.2 390 61.8
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 8.2e-135 484.6 361 67.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.0e-132 477.6 390 61.0
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 2.6e-128 463.0 317 75.7
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.1e-126 455.7 360 61.7
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 5.7e-112 408.7 365 60.5
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.9e-99 367.1 366 55.7
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 5.6e-91 339.0 302 59.6
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 2.8e-82 310.1 226 70.8
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.9e-68 263.1 186 76.3
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.8e-65 254.2 328 43.3
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.1e-59 235.0 198 61.1
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-59 234.2 139 86.3
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 8.1e-58 228.8 123 87.0
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 3.1e-57 226.9 160 71.2
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.7e-40 169.1 162 55.6
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 9.4e-38 162.2 119 68.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 3.9e-36 156.8 111 77.5
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 3.1e-33 147.1 81 91.4
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.9e-30 137.9 82 85.4
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 1.0e-28 132.1 106 58.5
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-26 125.2 80 70.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 8.8e-20 102.4 144 43.8
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 3.7e-18 97.1 51 84.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 4.5e-16 90.1 94 52.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 7.0e-09 66.2 35 91.4


User provided reference genes

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