Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03154 Davidia involucrata HOM05D000886 ORTHO05D000525 3.5e-59 231.5 123 100.0
Dinv03445 Davidia involucrata HOM05D000886 ORTHO05D000525 8.5e-21 104.0 62 83.9
Actinidia38124 Actinidia chinensis HOM05D000886 ORTHO05D000525 1.7e-16 89.7 72 65.3
Dinv17692 Davidia involucrata HOM05D000886 ORTHO05D000525 6.9e-15 84.3 80 58.8
Lsat_1_v5_gn_5_111240 Lactuca sativa HOM05D000886 ORTHO05D000525 5.9e-14 81.3 87 50.6
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 1.0e-13 80.5 64 59.4
CiPaw.09G051600 Carya illinoinensis HOM05D000886 ORTHO05D000525 2.5e-12 75.9 64 60.9
Nn7g36495 Nelumbo nucifera HOM05D000886 ORTHO05D000525 3.2e-12 75.5 64 56.2
TWI53G1169 Tripterygium wilfordii HOM05D000886 ORTHO05D000525 3.2e-12 75.5 64 56.2
Cc06_g20650 Coffea canephora HOM05D000886 ORTHO05D000525 7.2e-12 74.3 63 63.5
Hma1.2p1_1283F.1_g272790 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 1.6e-11 73.2 80 52.5
ECA232G4885 Erigeron canadensis HOM05D000886 ORTHO05D000525 2.1e-11 72.8 64 54.7
Dinv12028 Davidia involucrata HOM05D000886 ORTHO05D000525 2.7e-11 72.4 62 56.5
Lsat_1_v5_gn_5_111280 Lactuca sativa HOM05D000886 ORTHO05D000525 2.7e-11 72.4 70 52.9
Rhsim04G0117600 Rhododendron simsii HOM05D000886 ORTHO05D000525 3.6e-11 72.0 82 51.2
Haze_20280 Corylus avellana HOM05D000886 ORTHO05D000525 4.7e-11 71.6 64 54.7
Haze_20285 Corylus avellana HOM05D000886 ORTHO05D000525 4.7e-11 71.6 64 54.7
PGSC0003DMG400029410 Solanum tuberosum HOM05D000886 ORTHO05D000525 4.7e-11 71.6 62 56.5
TWI74G0322 Tripterygium wilfordii HOM05D000886 ORTHO05D000525 4.7e-11 71.6 62 58.1
Lsat_1_v5_gn_9_55780 Lactuca sativa HOM05D000886 ORTHO05D000525 6.1e-11 71.2 86 50.0
Sabra16G0032800 Salix brachista HOM05D018708 ORTHO05D030502 6.1e-11 71.2 62 54.8
Nitab4.5_0000642g0270 Nicotiana tabacum HOM05D000886 ORTHO05D000525 7.9e-11 70.9 68 52.9
Eucgr.K01677 Eucalyptus grandis HOM05D000886 ORTHO05D000525 1.0e-10 70.5 64 54.7
Nitab4.5_0003694g0040 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.0e-10 70.5 68 52.9
TAR374G1684 Trochodendron aralioides HOM05D000886 ORTHO05D000525 1.0e-10 70.5 64 53.1
HanXRQChr09g0238531 Helianthus annuus HOM05D000886 ORTHO05D000525 1.4e-10 70.1 64 51.6
Nitab4.5_0003544g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.4e-10 70.1 62 54.8
Peaxi162Scf00011g01434 Petunia axillaris HOM05D000886 ORTHO05D000525 1.4e-10 70.1 64 51.6
Potri.016G028700 Populus trichocarpa HOM05D000886 ORTHO05D000525 1.4e-10 70.1 62 54.8
Rhsim04G0117500 Rhododendron simsii HOM05D000886 ORTHO05D000525 1.4e-10 70.1 80 50.0
Nitab4.5_0000699g0130 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.8e-10 69.7 62 53.2
Atru.chr1.1368 Acer truncatum HOM05D000886 ORTHO05D000525 2.3e-10 69.3 64 56.2
HanXRQChr15g0495511 Helianthus annuus HOM05D000886 ORTHO05D000525 2.3e-10 69.3 80 47.5
Prupe.7G019000 Prunus persica HOM05D000886 ORTHO05D000525 2.3e-10 69.3 64 57.8
DCAR_013532 Daucus carota HOM05D000886 ORTHO05D000525 3.0e-10 68.9 64 53.1
HanXRQChr15g0495501 Helianthus annuus HOM05D000886 ORTHO05D000525 3.9e-10 68.6 70 50.0
Lsat_1_v5_gn_9_55760 Lactuca sativa HOM05D000886 ORTHO05D000525 3.9e-10 68.6 82 47.6
Sopen12g031440 Solanum pennellii HOM05D000886 ORTHO05D000525 3.9e-10 68.6 62 54.8
Sc25g0005550 Simmondsia chinensis HOM05D000886 ORTHO05D000525 5.1e-10 68.2 64 57.8
Solyc12g094540.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 5.1e-10 68.2 62 54.8
HanXRQChr09g0255181 Helianthus annuus HOM05D000886 ORTHO05D000525 6.7e-10 67.8 85 43.5
CAN.G208.12 Capsicum annuum HOM05D000886 ORTHO05D000525 8.8e-10 67.4 62 50.0
Lj2A411T32 Lonicera japonica HOM05D000886 ORTHO05D000525 1.5e-09 66.6 62 51.6
Prupe.4G179100 Prunus persica HOM05D000886 ORTHO05D000525 1.5e-09 66.6 70 47.1
QL07p013665 Quercus lobata HOM05D000886 ORTHO05D000525 1.5e-09 66.6 64 54.7
Lalb_Chr03g0042881 Lupinus albus HOM05D000886 ORTHO05D000525 2.0e-09 66.2 64 54.7
MD03G1253300 Malus domestica HOM05D000886 ORTHO05D000525 2.0e-09 66.2 78 48.7
Lj1g0021355 Lotus japonicus HOM05D000886 ORTHO05D000525 2.6e-09 65.9 64 53.1
Oeu060771.1 Olea europaea HOM05D000886 ORTHO05D000525 2.6e-09 65.9 65 55.4
Dinv09707 Davidia involucrata HOM05D000886 ORTHO05D000525 3.3e-09 65.5 71 54.9
Nitab4.5_0006171g0080 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.3e-09 65.5 64 50.0
Rhsim04G0069800 Rhododendron simsii HOM05D000886 ORTHO05D000525 4.4e-09 65.1 62 54.8
Rhsim06G0095500 Rhododendron simsii HOM05D000886 ORTHO05D000525 4.4e-09 65.1 75 52.0
ClCG10G016290 Citrullus lanatus HOM05D000886 ORTHO05D000525 5.7e-09 64.7 62 51.6
Peaxi162Scf00975g10015 Petunia axillaris HOM05D000886 ORTHO05D000525 5.7e-09 64.7 62 53.2
SalBow6G0974 Salvia bowleyana HOM05D000886 ORTHO05D000525 5.7e-09 64.7 65 53.8
Solyc01g103460.2 Solanum lycopersicum HOM05D000886 ORTHO05D000525 5.7e-09 64.7 64 50.0
Atru.chr1.1145 Acer truncatum HOM05D000886 ORTHO05D000525 9.7e-09 63.9 64 48.4
CsaV3_3G040040 Cucumis sativus L. HOM05D000886 ORTHO05D000525 9.7e-09 63.9 62 50.0
Dinv04815 Davidia involucrata HOM05D000886 ORTHO05D000525 9.7e-09 63.9 62 51.6
Dinv40353 Davidia involucrata HOM05D000657 ORTHO05D001476 9.7e-09 63.9 38 78.9
Nn4g25540 Nelumbo nucifera HOM05D000886 ORTHO05D000525 9.7e-09 63.9 62 51.6
MD09G1279200 Malus domestica HOM05D000886 ORTHO05D000525 1.3e-08 63.5 72 50.0
Nitab4.5_0000787g0060 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.3e-08 63.5 64 48.4
Sed0011417 Sechium edule HOM05D000886 ORTHO05D000525 1.3e-08 63.5 64 50.0
GSVIVG01025807001 Vitis vinifera HOM05D000886 ORTHO05D000525 1.3e-08 63.5 64 50.0
MBI18_g35538_MAGBIO Magnolia biondii HOM05D000886 ORTHO05D000525 1.7e-08 63.2 64 53.1
Nn4g25541 Nelumbo nucifera HOM05D000886 ORTHO05D000525 1.7e-08 63.2 64 50.0
Nitab4.5_0005169g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.7e-08 63.2 64 46.9
PGSC0003DMG400024888 Solanum tuberosum HOM05D000886 ORTHO05D000525 1.7e-08 63.2 64 48.4
CAN.G959.15 Capsicum annuum HOM05D000886 ORTHO05D000525 2.2e-08 62.8 70 48.6
ECA232G0479 Erigeron canadensis HOM05D000886 ORTHO05D000525 2.2e-08 62.8 78 41.0
MD12G1053400 Malus domestica HOM05D000886 ORTHO05D000525 2.2e-08 62.8 72 48.6
Oeu064751.1 Olea europaea HOM05D000886 ORTHO05D000525 2.2e-08 62.8 79 48.1
Peaxi162Scf00016g00923 Petunia axillaris HOM05D000886 ORTHO05D000525 2.2e-08 62.8 61 52.5
Sabra06G0021000 Salix brachista HOM05D000886 ORTHO05D000525 2.2e-08 62.8 62 43.5
SGA_v2.0_scaffold69G23180 Striga asiatica HOM05D000886 ORTHO05D000525 2.2e-08 62.8 65 49.2
Potri.006G031400 Populus trichocarpa HOM05D000886 ORTHO05D000525 2.8e-08 62.4 64 43.8
SalBow6G6665 Salvia bowleyana HOM05D000886 ORTHO05D000525 2.8e-08 62.4 65 53.8
MELO3C009746.2 Cucumis melo HOM05D000886 ORTHO05D000525 4.8e-08 61.6 64 46.9
CsaV3_3G040060 Cucumis sativus L. HOM05D000886 ORTHO05D000525 4.8e-08 61.6 64 46.9
Oeu060772.1 Olea europaea HOM05D000886 ORTHO05D000525 6.3e-08 61.2 65 52.3
Glyma.07G143200 Glycine max HOM05D000886 ORTHO05D000525 8.2e-08 60.8 86 46.5
Os01g0660800 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 8.2e-08 60.8 64 42.2
TPR.G1540 Trifolium pratense HOM05D000886 ORTHO05D000525 8.2e-08 60.8 62 50.0
MSTRG.19777 Avicennia marina HOM05D000886 ORTHO05D000525 1.1e-07 60.5 66 51.5
Nitab4.5_0000296g0050 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.1e-07 60.5 64 45.3
VMungo0647G2538 Vigna mungo HOM05D000886 ORTHO05D000525 1.1e-07 60.5 70 50.0
Ca_09162_v3 Cicer arietinum L. HOM05D000886 ORTHO05D000525 1.4e-07 60.1 64 46.9
HanXRQChr15g0495481 Helianthus annuus HOM05D000886 ORTHO05D000525 1.4e-07 60.1 83 45.8
HanXRQChr15g0495491 Helianthus annuus HOM05D000886 ORTHO05D000525 1.4e-07 60.1 80 46.2
Nitab4.5_0011877g0020 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.4e-07 60.1 62 43.5
Phvul.008G111200 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 1.4e-07 60.1 86 45.3
Psat3g135440 Pisum sativum HOM05D000886 ORTHO05D000525 1.4e-07 60.1 80 38.8
CANSAT56G3075 Cannabis sativa HOM05D000886 ORTHO05D000525 1.8e-07 59.7 64 48.4
FvH4_3g40510 Fragaria vesca HOM05D000886 ORTHO05D000525 1.8e-07 59.7 64 45.3
FAN11G3456 Fragaria x ananassa HOM05D000886 ORTHO05D000525 1.8e-07 59.7 64 45.3
FAN16G2738 Fragaria x ananassa HOM05D000886 ORTHO05D000525 1.8e-07 59.7 64 45.3
FAN25G0223 Fragaria x ananassa HOM05D000886 ORTHO05D000525 1.8e-07 59.7 64 45.3
Sopen01g045820 Solanum pennellii HOM05D000886 ORTHO05D000525 1.8e-07 59.7 61 49.2
Psat3g135480 Pisum sativum HOM05D000886 ORTHO05D000525 2.4e-07 59.3 80 46.2
SGA_v2.0_scaffold66G22305 Striga asiatica HOM05D000886 ORTHO05D000525 2.4e-07 59.3 73 42.5
TPR.G1581 Trifolium pratense HOM05D000886 ORTHO05D000525 2.4e-07 59.3 80 41.2
HPP92_008929 Vanilla planifolia HOM05D000886 ORTHO05D000525 2.4e-07 59.3 68 45.6
Ciclev10012747m.g Citrus clementina HOM05D000886 ORTHO05D000525 3.1e-07 58.9 62 53.2
TPR.G1559 Trifolium pratense HOM05D000886 ORTHO05D000525 3.1e-07 58.9 64 50.0
TAR623G1664 Trochodendron aralioides HOM05D000886 ORTHO05D000525 3.1e-07 58.9 84 47.6
Aqoxy2G02686 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 4.1e-07 58.5 64 48.4
MD14G1051900 Malus domestica HOM05D000886 ORTHO05D000525 4.1e-07 58.5 72 44.4
Aqoxy2G02685 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.3e-07 58.2 64 50.0
CSS0042968 Camellia sinensis var. sinensis HOM05D000886 ORTHO05D000525 5.3e-07 58.2 41 75.6
Hma1.2p1_1843F.1_g305030 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 5.3e-07 58.2 62 48.4
SMO230G0079 Selaginella moellendorffii HOM05D000886 ORTHO05D000525 5.3e-07 58.2 64 43.8
CAN.G220.18 Capsicum annuum HOM05D000886 ORTHO05D000525 7.0e-07 57.8 69 44.9
CAN.G809.12 Capsicum annuum HOM05D000886 ORTHO05D000525 7.0e-07 57.8 62 41.9
Migut.K00159 Erythranthe guttata HOM05D000886 ORTHO05D000525 7.0e-07 57.8 81 44.4
Lsat_1_v5_gn_9_55820 Lactuca sativa HOM05D000886 ORTHO05D000525 7.0e-07 57.8 61 49.2
Nn2g14323 Nelumbo nucifera HOM05D000886 ORTHO05D000525 7.0e-07 57.8 62 48.4
TPR.G1548 Trifolium pratense HOM05D000292 ORTHO05D000172 7.0e-07 57.8 80 43.8
ClCG10G016300 Citrullus lanatus HOM05D000886 ORTHO05D000525 9.1e-07 57.4 62 45.2
PGSC0003DMG400012475 Solanum tuberosum HOM05D000886 ORTHO05D000525 9.1e-07 57.4 68 42.6
PGSC0003DMG400012504 Solanum tuberosum HOM05D000886 ORTHO05D000525 9.1e-07 57.4 68 42.6
PGSC0003DMG400043401 Solanum tuberosum HOM05D000886 ORTHO05D000525 9.1e-07 57.4 62 53.2
CAN.G809.11 Capsicum annuum HOM05D000886 ORTHO05D000525 1.2e-06 57.0 62 40.3
PGR142G4357 Punica granatum HOM05D000886 ORTHO05D000525 1.2e-06 57.0 112 41.1
vmacro08978 Vaccinium macrocarpon HOM05D000886 ORTHO05D000525 1.2e-06 57.0 66 53.0
Aqoxy2G02679 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 1.5e-06 56.6 64 45.3
ECA232G1837 Erigeron canadensis HOM05D000886 ORTHO05D000525 1.5e-06 56.6 65 44.6
Hma1.2p1_0662F.1_g198230 Hydrangea macrophylla HOM05D000886 ORTHO05D000525 1.5e-06 56.6 64 46.9
Nitab4.5_0000712g0220 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.5e-06 56.6 62 46.8
Nitab4.5_0014313g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.5e-06 56.6 84 44.0
TAR623G1595 Trochodendron aralioides HOM05D000886 ORTHO05D000525 1.5e-06 56.6 77 48.1
Zm00001eb359560 Zea mays HOM05D000886 ORTHO05D000525 1.5e-06 56.6 64 42.2
CAN.G220.19 Capsicum annuum HOM05D000886 ORTHO05D000525 2.0e-06 56.2 62 45.2
Lj3g0008510 Lotus japonicus HOM05D000886 ORTHO05D000525 2.0e-06 56.2 83 42.2
Sopen08g003290 Solanum pennellii HOM05D000886 ORTHO05D000525 2.0e-06 56.2 62 43.5
Aqoxy2G02678 Aquilegia oxysepala HOM05D000886 ORTHO05D000525 2.6e-06 55.8 64 43.8
Nitab4.5_0004382g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 2.6e-06 55.8 70 44.3
Peaxi162Scf00069g00011 Petunia axillaris HOM05D000886 ORTHO05D000525 2.6e-06 55.8 62 45.2
RcHm_v2.0_Chr5g0073181 Rosa chinensis HOM05D000886 ORTHO05D000525 2.6e-06 55.8 64 45.3
Solyc12g042390.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 2.6e-06 55.8 90 41.1
SGA_v2.0_scaffold240G44131 Striga asiatica HOM05D000886 ORTHO05D000525 2.6e-06 55.8 73 45.2
Zm00001eb157800 Zea mays HOM05D000886 ORTHO05D000525 2.6e-06 55.8 65 43.1
Lsat_1_v5_gn_9_55720 Lactuca sativa HOM05D000886 ORTHO05D000525 3.4e-06 55.5 70 44.3
Nitab4.5_0004310g0010 Nicotiana tabacum HOM05D000886 ORTHO05D000525 3.4e-06 55.5 70 41.4
Peaxi162Scf00102g00087 Petunia axillaris HOM05D000886 ORTHO05D000525 3.4e-06 55.5 68 42.6
Solyc08g007350.2 Solanum lycopersicum HOM05D000886 ORTHO05D000525 3.4e-06 55.5 62 43.5
Solyc10g078200.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 3.4e-06 55.5 62 50.0
Sopen10g028880 Solanum pennellii HOM05D000886 ORTHO05D000525 3.4e-06 55.5 62 50.0
PGSC0003DMG400014043 Solanum tuberosum HOM05D000886 ORTHO05D000525 3.4e-06 55.5 68 42.6
CAN.G220.20 Capsicum annuum HOM05D000886 ORTHO05D000525 4.5e-06 55.1 62 45.2
Nitab4.5_0002225g0060 Nicotiana tabacum HOM05D000886 ORTHO05D000525 4.5e-06 55.1 70 42.9
Peaxi162Scf00877g00007 Petunia axillaris HOM05D000886 ORTHO05D000525 4.5e-06 55.1 79 40.5
SalBow1G2078 Salvia bowleyana HOM05D000886 ORTHO05D000525 4.5e-06 55.1 80 47.5
PGSC0003DMG400043674 Solanum tuberosum HOM05D000886 ORTHO05D000525 4.5e-06 55.1 64 43.8
TPR.G1588 Trifolium pratense HOM05D000886 ORTHO05D000525 4.5e-06 55.1 70 48.6
EL10Ac3g07294 Beta vulgaris HOM05D000886 ORTHO05D000525 5.9e-06 54.7 62 46.8
Lj8P110T28 Lonicera japonica HOM05D000886 ORTHO05D000525 5.9e-06 54.7 58 48.3
PSO017G0537 Papaver somniferum HOM05D000886 ORTHO05D000525 5.9e-06 54.7 62 43.5
HanXRQChr09g0253651 Helianthus annuus HOM05D000886 ORTHO05D000525 7.7e-06 54.3 80 40.0
Lj1g0026528 Lotus japonicus HOM05D000886 ORTHO05D000525 7.7e-06 54.3 64 46.9
Nitab4.5_0002225g0070 Nicotiana tabacum HOM05D000886 ORTHO05D000525 7.7e-06 54.3 68 45.6
Peaxi162Scf00001g00142 Petunia axillaris HOM05D000909 ORTHO05D010573 7.7e-06 54.3 73 42.5
Peaxi162Scf00102g01072 Petunia axillaris HOM05D000886 ORTHO05D000525 7.7e-06 54.3 62 43.5
Peaxi162Scf00462g00085 Petunia axillaris HOM05D000886 ORTHO05D000525 7.7e-06 54.3 67 41.8
Solyc11g006480.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 7.7e-06 54.3 64 40.6
Sopen12g021370 Solanum pennellii HOM05D000886 ORTHO05D000525 7.7e-06 54.3 90 40.0
Zm00001eb156970 Zea mays HOM05D000886 ORTHO05D000525 7.7e-06 54.3 65 41.5


User provided reference genes

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