Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03085 Davidia involucrata HOM05D001386 ORTHO05D010673 5.0e-44 180.6 86 100.0
Dinv04863 Davidia involucrata HOM05D001386 ORTHO05D004014 1.7e-20 102.4 48 100.0
Dinv11152 Davidia involucrata HOM05D001386 ORTHO05D004014 3.8e-20 101.3 48 97.9
CSS0000356 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 1.1e-19 99.8 48 93.8
CSS0012516 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 1.1e-19 99.8 48 93.8
Actinidia15831 Actinidia chinensis HOM05D001386 ORTHO05D004014 1.9e-19 99.0 48 95.8
TAR374G0987 Trochodendron aralioides HOM05D001386 ORTHO05D004014 4.2e-19 97.8 47 95.7
Migut.I00515 Erythranthe guttata HOM05D001386 ORTHO05D004014 5.5e-19 97.4 47 95.7
vmacro19217 Vaccinium macrocarpon HOM05D001386 ORTHO05D004014 9.4e-19 96.7 48 93.8
Actinidia08862 Actinidia chinensis HOM05D001386 ORTHO05D004014 1.6e-18 95.9 48 93.8
Hma1.2p1_0014F.1_g009690 Hydrangea macrophylla HOM05D001386 ORTHO05D004014 1.6e-18 95.9 47 93.6
PSO063G7389 Papaver somniferum HOM05D001386 ORTHO05D004014 1.6e-18 95.9 47 95.7
PSO782G3915 Papaver somniferum HOM05D001386 ORTHO05D004014 1.6e-18 95.9 47 95.7
SalBow1G2492 Salvia bowleyana HOM05D001386 ORTHO05D004014 1.6e-18 95.9 47 93.6
TWI14G0111 Tripterygium wilfordii HOM05D001386 ORTHO05D004014 2.1e-18 95.5 47 93.6
FvH4_5g07871 Fragaria vesca HOM05D001386 ORTHO05D004014 2.7e-18 95.1 47 93.6
Potri.012G095400 Populus trichocarpa HOM05D001386 ORTHO05D004014 2.7e-18 95.1 47 95.7
RcHm_v2.0_Chr7g0190581 Rosa chinensis HOM05D001386 ORTHO05D004014 2.7e-18 95.1 47 93.6
CSS0038009 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 3.6e-18 94.7 48 89.6
Cpa.g.sc2085.2 Carica papaya HOM05D001386 ORTHO05D004014 3.6e-18 94.7 47 95.7
Lsat_1_v5_gn_4_76561 Lactuca sativa HOM05D001386 ORTHO05D004014 3.6e-18 94.7 47 93.6
Potri.015G092900 Populus trichocarpa HOM05D001386 ORTHO05D004014 4.7e-18 94.4 47 93.6
HanXRQChr16g0497801 Helianthus annuus HOM05D001386 ORTHO05D004014 6.1e-18 94.0 47 95.7
Eucgr.K02739 Eucalyptus grandis HOM05D001386 ORTHO05D004014 8.0e-18 93.6 47 91.5
Prupe.5G153500 Prunus persica HOM05D001386 ORTHO05D004014 8.0e-18 93.6 47 89.4
HanXRQChr05g0153931 Helianthus annuus HOM05D001386 ORTHO05D004014 1.0e-17 93.2 47 93.6
Manes.14G053300 Manihot esculenta HOM05D001386 ORTHO05D004014 1.0e-17 93.2 47 91.5
Oeu056005.1 Olea europaea HOM05D001386 ORTHO05D004014 1.0e-17 93.2 47 91.5
PGR044G2092 Punica granatum HOM05D001386 ORTHO05D004014 1.0e-17 93.2 47 91.5
Aa31LG10G140 Aethionema arabicum HOM05D001386 ORTHO05D004014 1.4e-17 92.8 47 89.4
AL1G64380 Arabidopsis lyrata HOM05D001386 ORTHO05D004014 1.4e-17 92.8 47 89.4
AT1G56110 Arabidopsis thaliana HOM05D001386 ORTHO05D004014 1.4e-17 92.8 47 89.4
Carub.0001s4472 Capsella rubella HOM05D001386 ORTHO05D004014 1.4e-17 92.8 47 89.4
MSTRG.9320 Avicennia marina HOM05D001386 ORTHO05D004014 1.8e-17 92.4 47 87.2
Oeu023478.1 Olea europaea HOM05D001386 ORTHO05D004014 1.8e-17 92.4 47 91.5
TWI39G0283 Tripterygium wilfordii HOM05D001386 ORTHO05D004014 1.8e-17 92.4 47 91.5
Lj9A707T56 Lonicera japonica HOM05D001386 ORTHO05D004014 2.3e-17 92.0 47 87.2
Nitab4.5_0000155g0130 Nicotiana tabacum HOM05D001386 ORTHO05D004014 2.3e-17 92.0 47 89.4
Nitab4.5_0013308g0010 Nicotiana tabacum HOM05D001386 ORTHO05D004014 2.3e-17 92.0 47 89.4
Rhsim08G0188100 Rhododendron simsii HOM05D001386 ORTHO05D004014 2.3e-17 92.0 50 88.0
GSVIVG01008506001 Vitis vinifera HOM05D001386 ORTHO05D004014 2.3e-17 92.0 47 91.5
Migut.D01257 Erythranthe guttata HOM05D001386 ORTHO05D004014 3.0e-17 91.7 47 91.5
Lsat_1_v5_gn_1_29280 Lactuca sativa HOM05D001386 ORTHO05D004014 3.0e-17 91.7 47 91.5
Manes.06G117900 Manihot esculenta HOM05D001386 ORTHO05D004014 3.0e-17 91.7 47 89.4
Carub.0003s1222 Capsella rubella HOM05D001386 ORTHO05D004014 4.0e-17 91.3 48 89.6
ECA232G5020 Erigeron canadensis HOM05D001386 ORTHO05D004014 4.0e-17 91.3 47 89.4
ECA246G0967 Erigeron canadensis HOM05D001386 ORTHO05D004014 4.0e-17 91.3 47 89.4
TAR622G1164 Trochodendron aralioides HOM05D001386 ORTHO05D004014 4.0e-17 91.3 47 91.5
Duzib205G1332 Durio zibethinus HOM05D001386 ORTHO05D004014 5.2e-17 90.9 47 89.4
Lj9C476G21 Lonicera japonica HOM05D001386 ORTHO05D004014 5.2e-17 90.9 47 85.1
Thhalv10004082m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 8.8e-17 90.1 48 87.5
SGA_v2.0_scaffold37G14621 Striga asiatica HOM05D001386 ORTHO05D004014 8.8e-17 90.1 47 89.4
Ciclev10019526m.g Citrus clementina HOM05D001386 ORTHO05D004014 1.2e-16 89.7 47 89.4
Thhalv10011387m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 1.2e-16 89.7 47 87.2
Nn3g16517 Nelumbo nucifera HOM05D001386 ORTHO05D004014 1.2e-16 89.7 47 87.2
THA.LOC104816144 Tarenaya hassleriana HOM05D001386 ORTHO05D004014 1.2e-16 89.7 47 87.2
Atru.chr9.1089 Acer truncatum HOM05D001386 ORTHO05D004014 1.5e-16 89.4 47 89.4
CARHR045860 Cardamine hirsuta HOM05D001386 ORTHO05D004014 1.5e-16 89.4 47 85.1
MBI11_g06762_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 1.5e-16 89.4 47 87.2
MBI15_g10562_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 1.5e-16 89.4 47 87.2
SGA_v2.0_scaffold5G02873 Striga asiatica HOM05D001386 ORTHO05D004014 1.5e-16 89.4 47 87.2
BcaB04g16920 Brassica carinata HOM05D001386 ORTHO05D004014 2.0e-16 89.0 47 85.1
BcaC08g43679 Brassica carinata HOM05D001386 ORTHO05D004014 2.0e-16 89.0 47 85.1
A08p00090 Brassica napus HOM05D000054 ORTHO05D000286 2.0e-16 89.0 47 85.1
BolC3t21638H Brassica oleracea HOM05D001386 ORTHO05D004014 2.0e-16 89.0 47 85.1
BraA08t32066Z Brassica rapa HOM05D001386 ORTHO05D004014 2.0e-16 89.0 47 85.1
BraSC56t46383Z Brassica rapa HOM05D001386 ORTHO05D004014 2.0e-16 89.0 47 85.1
AL3G24530 Arabidopsis lyrata HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
AT3G12860 Arabidopsis thaliana HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
BcaB04g18733 Brassica carinata HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
BcaB04g21172 Brassica carinata HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
BcaC01g04038 Brassica carinata HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
A03p37840 Brassica napus HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
C03p45900 Brassica napus HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
BolC3t16867H Brassica oleracea HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
BraA03t12939Z Brassica rapa HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
CARHR087380 Cardamine hirsuta HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
MD06G1145200 Malus domestica HOM05D001386 ORTHO05D004014 2.6e-16 88.6 47 87.2
SHI26313 Sapria himalayana HOM05D001386 ORTHO05D004014 2.6e-16 88.6 47 83.0
Sp3g11000 Schrenkiella parvula HOM05D001386 ORTHO05D004014 2.6e-16 88.6 48 85.4
C06p10990 Brassica napus HOM05D001386 ORTHO05D004014 4.4e-16 87.8 47 83.0
Gohir.A11G035800 Gossypium hirsutum HOM05D001386 ORTHO05D004014 4.4e-16 87.8 47 87.2
Gohir.D11G039400 Gossypium hirsutum HOM05D001386 ORTHO05D004014 4.4e-16 87.8 47 87.2
Gorai.007G042300 Gossypium raimondii HOM05D001386 ORTHO05D004014 4.4e-16 87.8 47 87.2
HanXRQChr09g0273011 Helianthus annuus HOM05D001386 ORTHO05D004014 4.4e-16 87.8 47 89.4
MD14G1159900 Malus domestica HOM05D001386 ORTHO05D004014 4.4e-16 87.8 47 87.2
Nitab4.5_0001338g0160 Nicotiana tabacum HOM05D001386 ORTHO05D004014 4.4e-16 87.8 47 87.2
Nitab4.5_0013216g0010 Nicotiana tabacum HOM05D001386 ORTHO05D004014 4.4e-16 87.8 47 87.2
Peaxi162Scf00673g00440 Petunia axillaris HOM05D001386 ORTHO05D004014 4.4e-16 87.8 47 87.2
Sp1g41760 Schrenkiella parvula HOM05D001386 ORTHO05D004014 5.7e-16 87.4 47 85.1
HPP92_024996 Vanilla planifolia HOM05D001386 ORTHO05D004014 5.7e-16 87.4 46 87.0
BcaB06g25506 Brassica carinata HOM05D001386 ORTHO05D004014 1.3e-15 86.3 48 83.3
Thhalv10020558m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 1.3e-15 86.3 48 83.3
Solyc01g100570.4 Solanum lycopersicum HOM05D001386 ORTHO05D004014 1.3e-15 86.3 47 85.1
Sopen01g044070 Solanum pennellii HOM05D001386 ORTHO05D004014 1.3e-15 86.3 47 85.1
PGSC0003DMG400002765 Solanum tuberosum HOM05D001386 ORTHO05D004014 1.3e-15 86.3 47 85.1
THA.LOC104810267 Tarenaya hassleriana HOM05D001386 ORTHO05D004014 1.3e-15 86.3 47 83.0
CAN.G1076.18 Capsicum annuum HOM05D001386 ORTHO05D004014 1.7e-15 85.9 47 85.1
MBI13_g04773_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 1.7e-15 85.9 54 74.1
MBI15_g03892_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 1.7e-15 85.9 46 87.0
Aqoxy5G03467 Aquilegia oxysepala HOM05D001386 ORTHO05D004014 2.2e-15 85.5 47 83.0
DCAR_021613 Daucus carota HOM05D001386 ORTHO05D004014 2.2e-15 85.5 47 85.1
MBI10_g21539_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D010673 2.2e-15 85.5 47 83.0
C03p04850 Brassica napus HOM05D001006 ORTHO05D010673 2.8e-15 85.1 46 82.6
vmacro02034 Vaccinium macrocarpon HOM05D001386 ORTHO05D004014 2.8e-15 85.1 47 85.1
ClCG06G017770 Citrullus lanatus HOM05D001386 ORTHO05D004014 6.3e-15 84.0 47 83.0
Nn4g22384 Nelumbo nucifera HOM05D001386 ORTHO05D004014 6.3e-15 84.0 47 83.0
PSO017G5462 Papaver somniferum HOM05D001386 ORTHO05D004014 6.3e-15 84.0 47 87.2
PSO478G0383 Papaver somniferum HOM05D001386 ORTHO05D004014 6.3e-15 84.0 47 87.2
Sed0000726 Sechium edule HOM05D001386 ORTHO05D004014 6.3e-15 84.0 47 83.0
unitig_22.g5753 Utricularia gibba HOM05D001386 ORTHO05D004014 6.3e-15 84.0 47 80.9
CDE04G1039 Ceratophyllum demersum HOM05D001386 ORTHO05D004014 8.3e-15 83.6 47 83.0
Duzib068G0731 Durio zibethinus HOM05D001386 ORTHO05D004014 8.3e-15 83.6 47 83.0
PSO386G0214 Papaver somniferum HOM05D001386 ORTHO05D004014 8.3e-15 83.6 47 80.9
Thecc.03G126200 Theobroma cacao HOM05D001386 ORTHO05D004014 8.3e-15 83.6 47 83.0
unitig_66.g29100 Utricularia gibba HOM05D001386 ORTHO05D004014 8.3e-15 83.6 47 80.9
unitig_736.g23007 Utricularia gibba HOM05D001386 ORTHO05D004014 8.3e-15 83.6 47 80.9
Actinidia25592 Actinidia chinensis HOM05D001386 ORTHO05D004014 1.1e-14 83.2 41 95.1
Cc04_g10000 Coffea canephora HOM05D001386 ORTHO05D004014 1.1e-14 83.2 47 80.9
Psat4g063120 Pisum sativum HOM05D001386 ORTHO05D004014 1.1e-14 83.2 47 85.1
A06p08870 Brassica napus HOM05D040709 ORTHO05D099599 1.4e-14 82.8 47 80.9
Gohir.D07G056700 Gossypium hirsutum HOM05D001386 ORTHO05D004014 1.4e-14 82.8 47 83.0
Gorai.001G060200 Gossypium raimondii HOM05D001386 ORTHO05D004014 1.4e-14 82.8 47 83.0
ATR0686G022 Amborella trichopoda HOM05D001386 ORTHO05D004014 1.8e-14 82.4 47 78.7
MELO3C026228.2 Cucumis melo HOM05D001386 ORTHO05D004014 1.8e-14 82.4 47 80.9
CsaV3_1G000680 Cucumis sativus L. HOM05D001386 ORTHO05D004014 1.8e-14 82.4 47 80.9
Gohir.A07G052200 Gossypium hirsutum HOM05D001386 ORTHO05D004014 1.8e-14 82.4 47 83.0
BolC9t54832H Brassica oleracea HOM05D001006 ORTHO05D010673 2.4e-14 82.0 46 80.4
Os03g0352300 Oryza sativa ssp. japonica HOM05D001386 ORTHO05D004014 2.4e-14 82.0 47 80.9
Zm00001eb016970 Zea mays HOM05D001386 ORTHO05D004014 2.4e-14 82.0 47 80.9
Zm00001eb394640 Zea mays HOM05D001386 ORTHO05D004014 2.4e-14 82.0 47 80.9
COL.COLO4_28077 Corchorus olitorius HOM05D001386 ORTHO05D004014 4.1e-14 81.3 47 78.7
Sed0002077 Sechium edule HOM05D001386 ORTHO05D004014 5.4e-14 80.9 46 80.4
CiPaw.11G009700 Carya illinoinensis HOM05D001386 ORTHO05D004014 7.0e-14 80.5 47 78.7
CiPaw.12G037600 Carya illinoinensis HOM05D001386 ORTHO05D004014 1.2e-13 79.7 47 76.6
Os07g0661800 Oryza sativa ssp. japonica HOM05D001386 ORTHO05D004014 1.2e-13 79.7 46 78.3
Cfa018857 Carpinus fangiana HOM05D001386 ORTHO05D004014 1.6e-13 79.3 47 78.7
Haze_07241 Corylus avellana HOM05D001386 ORTHO05D004014 1.6e-13 79.3 47 78.7
PSO210G4297 Papaver somniferum HOM05D001386 ORTHO05D004014 1.6e-13 79.3 47 76.6
DCAR_016408 Daucus carota HOM05D001386 ORTHO05D004014 2.0e-13 79.0 47 78.7
QL10p004371 Quercus lobata HOM05D001386 ORTHO05D004014 2.0e-13 79.0 47 76.6
arahy.Tifrunner.gnm1.ann1.45I9WG Arachis hypogaea HOM05D001386 ORTHO05D004014 2.7e-13 78.6 47 78.7
arahy.Tifrunner.gnm1.ann1.96UIHW Arachis hypogaea HOM05D001386 ORTHO05D004014 2.7e-13 78.6 47 78.7
arahy.Tifrunner.gnm1.ann1.T2LSLY Arachis hypogaea HOM05D001386 ORTHO05D004014 2.7e-13 78.6 47 78.7
arahy.Tifrunner.gnm1.ann1.W1WWEB Arachis hypogaea HOM05D001386 ORTHO05D004014 2.7e-13 78.6 47 78.7
Glyma.05G046400 Glycine max HOM05D001386 ORTHO05D004014 2.7e-13 78.6 47 78.7
Glyma.17G128400 Glycine max HOM05D001386 ORTHO05D004014 2.7e-13 78.6 47 78.7
Lj4g0019980 Lotus japonicus HOM05D001386 ORTHO05D004014 2.7e-13 78.6 47 78.7
VMungo1080G0898 Vigna mungo HOM05D001386 ORTHO05D004014 4.5e-13 77.8 47 76.6
Glyma.07G102600 Glycine max HOM05D001386 ORTHO05D004014 5.9e-13 77.4 47 76.6
Lj2g0001549 Lotus japonicus HOM05D001386 ORTHO05D004014 7.7e-13 77.0 46 78.3
Medtr4g103790 Medicago truncatula HOM05D001386 ORTHO05D004014 7.7e-13 77.0 47 80.9
TPR.G30017 Trifolium pratense HOM05D001386 ORTHO05D004014 7.7e-13 77.0 47 78.7
Pp3c25_6350 Physcomitrium patens HOM05D001386 ORTHO05D004014 1.0e-12 76.6 47 76.6
Lalb_Chr13g0297371 Lupinus albus HOM05D001386 ORTHO05D004014 1.3e-12 76.3 47 76.6
Lalb_Chr06g0172261 Lupinus albus HOM05D001386 ORTHO05D004014 1.7e-12 75.9 47 74.5
Lalb_Chr07g0183301 Lupinus albus HOM05D001386 ORTHO05D004014 1.7e-12 75.9 47 74.5
Lalb_Chr12g0202131 Lupinus albus HOM05D001386 ORTHO05D004014 1.7e-12 75.9 47 74.5
Phvul.003G209500 Phaseolus vulgaris HOM05D001386 ORTHO05D004014 1.7e-12 75.9 47 74.5
C02p55460 Brassica napus HOM05D001386 ORTHO05D004014 5.0e-12 74.3 47 70.2
BolC2t11602H Brassica oleracea HOM05D001386 ORTHO05D004014 5.0e-12 74.3 47 70.2
Pp3c16_5220 Physcomitrium patens HOM05D001386 ORTHO05D004014 6.6e-12 73.9 47 74.5
BcaB07g30088 Brassica carinata HOM05D001386 ORTHO05D004014 8.6e-12 73.6 47 70.2
A02p36500 Brassica napus HOM05D001386 ORTHO05D004014 8.6e-12 73.6 47 70.2
BraA02t08645Z Brassica rapa HOM05D001386 ORTHO05D004014 8.6e-12 73.6 47 70.2
DCAR_020403 Daucus carota HOM05D001386 ORTHO05D000074 1.1e-11 73.2 50 64.0
CBR_g149 Chara braunii HOM05D001386 ORTHO05D004014 4.2e-11 71.2 53 60.4
Cre12.g525200 Chlamydomonas reinhardtii HOM05D001386 ORTHO05D004014 5.5e-11 70.9 48 68.8
AagrBONN_evm.TU.Sc2ySwM_362.2478 Anthoceros agrestis HOM05D001386 ORTHO05D004014 7.2e-11 70.5 50 66.0
Mapoly0069s0034 Marchantia polymorpha HOM05D001386 ORTHO05D004014 1.6e-10 69.3 53 62.3
DCAR_030968 Daucus carota HOM05D000547 ORTHO05D000756 6.1e-10 67.4 47 63.8
MCO16G544 Micromonas commoda HOM05D001386 ORTHO05D004014 8.0e-10 67.0 49 61.2
Aqoxy3G02028 Aquilegia oxysepala HOM05D001386 ORTHO05D010673 1.8e-09 65.9 47 66.0
SMO353G0194 Selaginella moellendorffii HOM05D001386 ORTHO05D004014 8.9e-09 63.5 47 66.0
Ca_23254_v3 Cicer arietinum L. HOM05D001386 ORTHO05D019544 2.0e-08 62.4 37 81.1
Sp2g17860 Schrenkiella parvula HOM05D001386 ORTHO05D004014 4.4e-08 61.2 34 82.4
Hund02424 Selenicereus undatus HOM05D001386 ORTHO05D004014 4.9e-07 57.8 47 61.7
Sc22g0004190 Simmondsia chinensis HOM05D001386 ORTHO05D004014 1.4e-06 56.2 49 61.2
Ca_00918_v3 Cicer arietinum L. HOM05D001386 ORTHO05D004014 2.4e-06 55.5 31 80.6


User provided reference genes

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