Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.5e-104 382.9 197 100.0
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.0e-72 276.2 226 69.5
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 6.4e-71 271.2 228 67.5
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.5e-69 265.4 228 68.0
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 2.3e-68 262.7 219 69.4
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.0e-68 262.3 233 66.1
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 2.5e-67 259.2 226 66.4
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.5e-67 259.2 231 67.1
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 3.3e-67 258.8 228 66.2
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 7.3e-67 257.7 229 67.2
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 9.6e-67 257.3 228 67.1
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 4.8e-66 255.0 238 65.1
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 6.2e-66 254.6 218 66.5
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 8.1e-66 254.2 217 68.2
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 4.0e-65 251.9 234 65.0
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 9.0e-65 250.8 232 65.1
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.5e-64 250.0 226 65.5
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.5e-64 250.0 227 66.1
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 3.4e-64 248.8 229 65.9
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 5.8e-64 248.1 213 66.2
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 5.8e-64 248.1 216 65.3
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.3e-63 246.9 230 65.2
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.3e-63 246.9 230 65.2
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.7e-63 246.5 214 65.4
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.2e-63 246.1 230 65.2
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.2e-63 246.1 230 65.2
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 2.9e-63 245.7 223 63.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 6.4e-63 244.6 229 64.2
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 6.4e-63 244.6 230 64.8
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 6.4e-63 244.6 211 63.0
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 6.4e-63 244.6 230 65.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.1e-62 243.8 214 64.0
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.4e-62 242.7 212 65.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 4.2e-62 241.9 207 65.7
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 4.2e-62 241.9 230 63.0
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 4.2e-62 241.9 231 63.6
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 4.2e-62 241.9 213 66.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 5.4e-62 241.5 230 63.9
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 7.1e-62 241.1 231 61.5
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 9.3e-62 240.7 215 64.2
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.6e-61 240.0 233 63.1
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 1.6e-61 240.0 203 65.5
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.7e-61 239.2 226 62.4
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 6.0e-61 238.0 216 63.0
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.8e-61 237.7 230 62.2
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.0e-60 237.3 230 62.6
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.7e-60 236.5 212 64.6
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.0e-60 235.7 226 61.5
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 3.0e-60 235.7 226 61.5
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 3.9e-60 235.3 232 63.4
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 8.7e-60 234.2 217 62.2
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.5e-59 233.4 213 64.3
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.3e-59 232.3 234 62.0
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.3e-59 232.3 234 62.0
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 3.3e-59 232.3 230 62.6
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 2.1e-58 229.6 211 62.6
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.4e-57 226.9 231 61.5
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.8e-57 226.5 205 62.9
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 2.4e-57 226.1 232 61.6
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 2.4e-57 226.1 217 61.8
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.2e-56 223.8 213 60.1
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 2.0e-56 223.0 201 63.2
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.6e-56 222.6 207 61.4
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 3.4e-56 222.2 207 61.8
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 4.5e-56 221.9 216 60.2
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 5.8e-56 221.5 254 55.5
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 5.8e-56 221.5 254 55.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 5.8e-56 221.5 236 59.3
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 7.6e-56 221.1 201 62.7
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.3e-55 220.3 214 60.3
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.2e-55 219.5 218 59.6
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.2e-55 219.5 211 60.7
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 2.9e-55 219.2 211 62.1
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 4.9e-55 218.4 227 56.8
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.9e-54 216.5 229 56.8
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.4e-54 216.1 214 61.2
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 5.4e-54 214.9 230 56.1
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 7.1e-54 214.5 213 59.2
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.6e-53 213.4 252 54.8
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.6e-53 213.4 223 56.5
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 1.0e-52 210.7 222 59.0
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 1.8e-52 209.9 205 59.0
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 5.1e-52 208.4 223 55.6
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 8.7e-52 207.6 226 58.0
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.5e-51 206.8 211 56.9
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 7.4e-51 204.5 227 55.9
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.3e-50 203.8 219 55.3
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 1.3e-50 203.8 232 55.2
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.8e-50 202.6 203 60.1
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.8e-50 201.8 198 59.1
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.1e-49 200.7 218 55.0
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.5e-48 196.8 210 57.6
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 2.2e-47 193.0 209 56.5
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 2.9e-47 192.6 209 55.0
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.9e-47 192.6 209 55.5
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 8.4e-47 191.0 235 51.9
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.4e-47 191.0 221 56.1
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.1e-46 190.7 232 53.4
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.9e-46 189.9 211 54.0
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 2.5e-46 189.5 232 51.7
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 3.2e-46 189.1 232 53.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 7.1e-46 188.0 207 57.5
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 9.3e-46 187.6 233 52.8
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-45 187.2 225 52.0
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.2e-45 187.2 232 52.2
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 1.6e-45 186.8 232 52.6
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 1.6e-45 186.8 232 52.6
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.6e-45 186.8 225 52.0
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 1.6e-45 186.8 232 52.6
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 2.1e-45 186.4 225 50.2
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.7e-45 186.0 207 57.0
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 3.5e-45 185.7 225 52.0
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 3.5e-45 185.7 225 52.0
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 3.5e-45 185.7 225 52.0
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.3e-44 183.7 229 52.4
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.3e-44 183.0 233 51.9
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 3.9e-44 182.2 221 51.6
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 5.1e-44 181.8 219 50.7
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.7e-44 181.0 201 55.2
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.8e-41 173.3 205 49.8
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 1.2e-40 170.6 227 50.2
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 2.6e-40 169.5 227 49.8
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 2.9e-39 166.0 221 50.2
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 4.2e-38 162.2 215 51.6
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 3.5e-37 159.1 219 47.5
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.1e-35 154.1 183 52.5
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.1e-35 154.1 142 62.0
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.6e-34 150.2 195 46.7
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 8.2e-34 147.9 126 67.5
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 2.9e-31 139.4 121 63.6
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 3.2e-30 136.0 129 62.0
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 7.9e-29 131.3 169 50.3
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.8e-28 130.2 216 43.5
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 4.7e-21 105.5 120 55.8
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 5.7e-19 98.6 120 49.2
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.4e-17 94.0 54 83.3
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.4e-17 94.0 57 80.7
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 6.5e-15 85.1 54 74.1
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 6.5e-15 85.1 51 78.4


User provided reference genes

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