Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 7.6e-118 427.2 213 100.0
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 3.3e-113 411.8 213 96.7
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 1.9e-105 386.0 205 92.7
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 1.2e-102 376.7 213 88.7
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 2.0e-102 375.9 209 88.5
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.3e-98 363.2 210 85.2
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 3.9e-98 361.7 205 86.3
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 1.3e-96 356.7 205 85.4
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 1.1e-95 353.6 209 83.7
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 9.0e-95 350.5 210 83.3
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 1.2e-94 350.1 210 82.9
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.5e-94 349.7 209 83.7
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 2.0e-94 349.4 209 80.9
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 5.8e-94 347.8 205 81.0
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 7.6e-94 347.4 205 80.5
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 6.4e-93 344.4 210 82.4
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.1e-92 343.6 209 79.9
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 3.2e-92 342.0 209 79.9
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 4.2e-92 341.7 209 78.5
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 2.7e-91 339.0 211 81.0
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 2.7e-91 339.0 210 80.5
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 3.5e-91 338.6 209 78.9
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.0e-90 337.0 190 86.3
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 8.7e-90 334.0 209 77.5
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 3.3e-89 332.0 227 71.8
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 3.3e-89 332.0 209 77.0
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 3.3e-89 332.0 209 78.0
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 4.8e-88 328.2 200 79.5
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 3.1e-87 325.5 205 77.1
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 1.5e-86 323.2 209 73.7
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 1.5e-86 323.2 209 75.6
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 2.0e-86 322.8 209 75.6
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 3.4e-86 322.0 210 81.0
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 3.4e-86 322.0 210 81.0
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 3.4e-86 322.0 210 81.0
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 1.0e-85 320.5 209 74.2
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 1.3e-85 320.1 181 86.2
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.3e-85 320.1 209 76.1
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 8.4e-85 317.4 210 80.0
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 1.1e-84 317.0 193 79.8
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 1.4e-84 316.6 207 72.9
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 9.3e-84 313.9 209 71.8
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 2.1e-83 312.8 209 72.2
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.3e-82 310.1 209 73.2
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.3e-82 310.1 209 73.2
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.3e-82 310.1 209 73.2
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 2.3e-82 309.3 209 74.6
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 2.3e-82 309.3 209 74.2
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 3.9e-82 308.5 234 70.9
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 5.1e-82 308.1 209 72.7
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 1.1e-81 307.0 214 69.6
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 1.5e-81 306.6 209 72.2
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.5e-81 306.6 205 74.6
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 1.5e-81 306.6 209 72.2
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 2.5e-81 305.8 209 72.2
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 4.3e-81 305.1 209 69.9
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.3e-81 305.1 210 72.9
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.3e-81 305.1 210 72.9
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 7.4e-81 304.3 209 70.3
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 9.6e-81 303.9 205 72.7
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.3e-80 303.5 210 72.4
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.8e-80 302.4 210 71.9
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 2.8e-80 302.4 209 71.3
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 6.2e-80 301.2 209 69.9
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.4e-79 300.1 205 71.7
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.4e-79 300.1 203 73.4
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.8e-79 299.7 210 71.4
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 2.4e-79 299.3 205 71.7
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 3.1e-79 298.9 200 71.5
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 4.1e-79 298.5 203 72.9
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 4.1e-79 298.5 210 69.5
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 5.3e-79 298.1 205 71.2
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 5.3e-79 298.1 209 67.9
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 9.0e-79 297.4 203 72.9
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 1.2e-78 297.0 210 68.6
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.2e-78 297.0 210 69.5
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.5e-78 296.6 203 77.8
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 2.0e-78 296.2 205 70.7
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 4.5e-78 295.0 208 69.2
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 2.2e-77 292.7 215 67.4
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 8.4e-77 290.8 210 74.3
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.1e-76 290.4 209 67.5
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 4.2e-76 288.5 209 69.4
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 5.5e-76 288.1 206 68.9
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 1.6e-75 286.6 196 70.9
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 2.1e-75 286.2 209 67.5
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 3.0e-74 282.3 209 66.0
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 1.1e-73 280.4 209 66.0
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.1e-73 280.4 209 66.0
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 2.5e-73 279.3 209 67.0
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 3.3e-73 278.9 209 65.1
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.3e-73 278.5 185 71.9
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 4.3e-73 278.5 209 67.0
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 5.7e-73 278.1 155 86.5
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 5.7e-73 278.1 209 65.6
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 4.8e-72 275.0 209 64.6
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.1e-71 273.9 209 65.1
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 1.1e-71 273.9 209 66.0
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 3.1e-71 272.3 205 64.4
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 3.1e-71 272.3 209 64.6
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 1.2e-70 270.4 190 69.5
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 1.5e-70 270.0 213 64.8
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 1.5e-70 270.0 205 64.4
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 2.2e-69 266.2 205 61.5
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 2.5e-68 262.7 190 68.9
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 6.7e-66 254.6 211 58.3
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 8.8e-66 254.2 180 67.2
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 6.3e-64 248.1 201 64.7
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 2.0e-57 226.5 145 72.4
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 6.3e-56 221.5 167 59.3
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 2.1e-51 206.5 133 81.2
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 5.7e-49 198.4 209 54.1
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 2.2e-48 196.4 200 52.0
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.2e-43 180.6 113 75.2
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 1.3e-32 144.1 179 38.5
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 1.8e-31 140.2 79 81.0
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 2.4e-31 139.8 176 43.2
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 1.9e-28 130.2 172 43.6
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 3.6e-27 125.9 63 87.3
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 6.8e-26 121.7 114 49.1
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 7.5e-25 118.2 116 54.3
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 2.8e-19 99.8 199 36.2
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 1.8e-18 97.1 50 84.0
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 4.4e-17 92.4 87 62.1
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 7.5e-17 91.7 71 63.4
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 6.0e-14 82.0 59 67.8
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 2.5e-12 76.6 55 69.1
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 2.5e-12 76.6 47 80.9
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 8.1e-11 71.6 83 48.2
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 1.1e-10 71.2 152 34.9
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 1.4e-10 70.9 78 47.4
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.3e-10 70.1 40 82.5
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 4.4e-09 65.9 49 63.3


User provided reference genes

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